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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0345700 |
| Transcript ID | LotjaGi1g1v0345700.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Eukaryotic translation initiation factor 3 subunit I; TAIR: AT2G46290.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q38884|EIF3I_ARATH Eukaryotic translation initiation factor 3 subunit I; TrEMBL-Plants: tr|I1J582|I1J582_SOYBN Eukaryotic translation initiation factor 3 subunit I; Found in the gene: LotjaGi1g1v0345700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:81235119..81239362) extracted from Lotus japonicus Gifu genome v1.2.
TTCGGATGTATGTAGGAATAGAATAGTGGCGGTGCACACGAGTCTGAGCATAAATCACAAGTTAAGTTTTAGCGAAACCC TAATTTCACAGTGTCATCGCCATCTTGCAGAAAACACACTGCACAGAGTCGCACACAGTTCAATCGAAGAAGAAGAACAA CCAGAACAACCACCATGAGGCCAATTCTGATGAAAGGCCACGAGAGGCCATTGACGTTCCTCAAGTACAACCGCGACGGC GATCTTCTCTTCTCCTGCGCCAAGGACCACAACCCCACCGTCTGGTTCGCCGACAACGGCGAACGCCTCGGCACCTATCG CGGCCACAACGGCGCCGTTTGGTGCTGCGACGTCTCACGCGACTCAAGCCGACTCATCACCGGTAGCGCAGATCAAACAG CGAAGCTCTGGAACGTGCAAACCGGTCAGCAGCTTTTCACCTTCAATTTCGATTCTCCGGCGAGGTCTGTGGACTTGTCC GTCGGTGATAAGCTTGTGGTTATCACTACCGATCCTTTCATGGAGCTTACTTCTGCAATCCATGTTAAACGCATTGCCGG AGATCCTTCTGATCAGACCGGGGAATCTCTGCATGTTCTTAAGGGTCCTCAGGGGAGAATCAATAGAGCTATTTGGGGAC CGTTGAATAGAACCATCATCAGTGCTGGTGAAGATGCTGTGATTCGTGTTTGGGATTCGGAGACTGGGAAACTGCTTCAA GAGTCTGATAAGGAGAGTGGTCATAAGAAGGCAATCACATCTCTTTCAAAATCTGCTGATGGGTCGCATTTTGTTACTGG GTCACTTGATAAGTCAGCTAGGGTATGAGATTTTTGTTTTGGTTTTTTGATTTCTCGTTGAGATTACATTACATTGATTA TATTTTCGCCTAACTTGTTTTTGTATTGTGGTTTGTTTTTGCAATGTGATAACTAGCTTTGGGATACCAGAACATTGACT CTTATCAAGACATATGTGACAGAACGCCCGGTCAATGCAGTTGCGATGTCGCCTCTTCTTGATCATGTATGTGTTTGTGC TTTGTATATTAGTTAACCTCGGGTTACGATGTTCATATTAATAGTGTTCTTTTAATCAATGCTGGACCTGGTGGTTTTGT TTCTACTTTATTTGATTGTTGATGTCTTGGTCCTGCATAAAGGTGTCCTATAATTCTAGGTGGTTGGTTAAAAATTTGTC TAATGCTTTAACCCCCCTCTTCCTTTGGGATGAAGTTATTCTACATAAAATGCTAACTCCATTTTTGCTTGTCGGAGTTG GCCACTAACTTTTGAAATCAATTCCAAATAGTTCATATACTTGATAGCTCTTGATGATAATCTTCTATCTATTTAAGTTT TCTTCCTTGATTTAATTGGTTCGTGTGTTCCTCTAGTCCTTTTATGTTTTCTGAATTTCATGCCCTGTCTTTTTCGTAGG TGGTACTTGGAGGTGGTCAGGATGCGTCAGCCGTTACCACTACTGATCATCGTGCTGGAAAATTTGAAGCCAAATTCTAT GACAAGGTAAATTGTTTTCCCCCATCTACATTTTAAGTTCTCCAACGATTTGATTGTCTGCTCATCCAGCATCGTTATTT CATATTTATTATTTCTATTTGTTTAGATTCTTCAAGAAGAAATTGGGGGTGTAAAAGGGCATTTCGGACCGATTAATGCT CTGGCCTTTAACCCTGATGGAAAAAGGTATGATCTTTGTTCTTCAACTCCTTTAATTTGTTGCACCATGAGCATGACATG CTTTTACTGCTGTGAATTTTCCATTCATTGAGACAATGGAGTAGTTTACAGCCAGGCTAGACCTTTCGACGATGCAATAT GCATAATATTTGCACCAGTCTTTCACACAATTATTTAAAATTTCAATTCCCATATGCTGTTCCCTATGTATAATTATCTA ATAGGTATGCTATAGATATATAAACAATCCAGCTTTATTCTACTAGGTGGGATCGGCTACATTGATCAATCAAAACCTGA AATTCTGTAATTGTAGATGTGTATATAAATTTCGATATCTAGTTGTATAAATAGTAGATCACTGTTTGCATGAAATATCG CCTGGAATGAGACCCCTATAATTAATATAATAGTTACCCATGACGATGATATCATTAGTATATCCCTGGCATGGTTAATA ACAAAACATAATCTATGTGAATTCGAAGAAGATGAAGTGTACTGATAATGGGGAAATTGAATTGATTGAATTGTAATTTG AATTACTGAGTGTGCAATCCTTGGTTATGTAGCTGGTAGTGTCAGTTGTAAGGCAGCTGCCTCTAAGCTATAGAACCATC AGCTGGAGTAACCAACTAACCATTAACTACTAACTGCGAGTGTTAGCTAATTGACTAACTTCTCAGTTCTCCCTCCAATA CCCCCCAGCCTCACATAAGAATGGTAAATATCCACGATTCTTTGCCGAGTCAAGGGGCCCTTTTTAAGATGTTGGCTCCT TGGGCCTGAGTGGAGACATTTAGTTAATGCATGGCCCAATTGAAGATGTCCTTTAATGGAAGATGAGGTTGGTGGCAATG TGAAGGGTGCTGACTGTGGCAATATAGCTCAGCTGGACGAGTGCTAGTAGCAACATGGAGATCTCGAAGTAAGAAGTGTG TGATAATATTGAAACTGAAATGATTGAATTTAATTACCGTGTGTGTACAATCTTTAGTTATATAGCTGATAGTGTGAGCT GTGAGCTAGGTACCTCAGAGCTAAAGAACCATCTGCTGGAATAACCAACTAACTACTAATCACTAATGGATCTGACTAAC TGCCTAACTGCGAGTGTTACCTCACCAGCTCTTCAGGTTCTACATCCAATACATAAACTGGTCCTAATTGAGGCACTGGC CATAAACAGATGAAATTACGACTTGTATGATGCTAGATAATATCATCGTTTGACCTTCAATTTGGTAGAAAGTAGGTAGT TATTTAAATTATGCTAAGCAATGCATTTATTCAAATAATTGTTGCTGGACATTTGCTTTTATTACATGTTTATCATGCAT GGGCCGGAGTTTGAGTTACAACTTCAAAGATATTCCAACATTAACTTGCTAGAGGACGACCGACTTTTGTTAATTGGCAC TTTTGTTGAGATTGAATTATGATTTGATCATATTATTGCGATTGTAGCACTCCATTTGATTTATGAGACATGGCACTGTT CATCTATTGGAGTGGTTTGTTGGTAATATAATTTTAGTTCTATGTCCTAACATTTTTATCTATTTCTTGATGGTCTTTCA TATTCTTTGTTTTGTAGCTTCTCAAGTGGAGGAGAAGATGGGTATGTAAGGTTGCACCACTTTGACCCAGATTATTTCAA CATCAAAATATAGTGCTAGAGATTTTTTTGGTTGATATTAGGCTTGACTCCTATAATGTAGTTTTTAATTTCTTTCACAA TATTTCTGTGATGATGATGTGCTTACAAAAGCTCTTCTATCCGTAATCTGCAAAAATTTCATGCTTGAGATTTTCCTTTT TGGATTATGTTTACTGTAATAACATTATGATTTTGGTTGGAGTATAAGTCCCGTTTTGTAGGTAGGTTTTCTTAGCTCGT CACCTGATTTTGGTAGGTCTTTCTTTGCTCTCACCTGATTTTGGTTGTCAAATATGCCTAAGACGTTTTTCTGGTACCTT TTCACACAATCCGCACCATATTTAATAAGCAAAGTGCATCTAATTGACAGTAAGGTAAATGAAATTACTTTTATTCAAGT TATCTGGAATCCATCTATATTTTTCACCTTCTTAGCCTACTTACAATGGGCTTGTTGAAAAAAATATTAAATAGTTGAAG TGTTGCAATGGAGTGTTGAAAAAAAAAGGGGGTTGTTCAAAGTGAGGTGGATTGTTTGAGGTTGGAAAAATTAAACCCCT TGAATGAGGTGGGAGTGGGGTCACTTAAAACAAAATCTTATTGGTTGTTGTGATTTTCAGATTTTTATCTCAACCTAATT ATTGTGGGTCAATTATTTCATAGTAAATTAATTTTTTTTTCACCCAAATTCATCATTTTTTTGTCTATAGAGACTTGATT CATTTGATTTGGACACAGAATAAAAAAACATTTTTCCCTCTACTTTTTCTATTTAGCCTCCAATAAACTCTTGTTTGTAG CTTTAAACATCTTTTTAGTGAAATAGATCCCAACAATAACCCTTTTAACACCCAAAATTCTACTAATTAACCTTTTAACT ACCC
CDS sequence (LotjaGi1g1v0345700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGCCAATTCTGATGAAAGGCCACGAGAGGCCATTGACGTTCCTCAAGTACAACCGCGACGGCGATCTTCTCTTCTC CTGCGCCAAGGACCACAACCCCACCGTCTGGTTCGCCGACAACGGCGAACGCCTCGGCACCTATCGCGGCCACAACGGCG CCGTTTGGTGCTGCGACGTCTCACGCGACTCAAGCCGACTCATCACCGGTAGCGCAGATCAAACAGCGAAGCTCTGGAAC GTGCAAACCGGTCAGCAGCTTTTCACCTTCAATTTCGATTCTCCGGCGAGGTCTGTGGACTTGTCCGTCGGTGATAAGCT TGTGGTTATCACTACCGATCCTTTCATGGAGCTTACTTCTGCAATCCATGTTAAACGCATTGCCGGAGATCCTTCTGATC AGACCGGGGAATCTCTGCATGTTCTTAAGGGTCCTCAGGGGAGAATCAATAGAGCTATTTGGGGACCGTTGAATAGAACC ATCATCAGTGCTGGTGAAGATGCTGTGATTCGTGTTTGGGATTCGGAGACTGGGAAACTGCTTCAAGAGTCTGATAAGGA GAGTGGTCATAAGAAGGCAATCACATCTCTTTCAAAATCTGCTGATGGGTCGCATTTTGTTACTGGGTCACTTGATAAGT CAGCTAGGCTTTGGGATACCAGAACATTGACTCTTATCAAGACATATGTGACAGAACGCCCGGTCAATGCAGTTGCGATG TCGCCTCTTCTTGATCATGTGGTACTTGGAGGTGGTCAGGATGCGTCAGCCGTTACCACTACTGATCATCGTGCTGGAAA ATTTGAAGCCAAATTCTATGACAAGATTCTTCAAGAAGAAATTGGGGGTGTAAAAGGGCATTTCGGACCGATTAATGCTC TGGCCTTTAACCCTGATGGAAAAAGCTTCTCAAGTGGAGGAGAAGATGGGTATGTAAGGTTGCACCACTTTGACCCAGAT TATTTCAACATCAAAATATAG
Protein sequence (LotjaGi1g1v0345700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWCCDVSRDSSRLITGSADQTAKLWN VQTGQQLFTFNFDSPARSVDLSVGDKLVVITTDPFMELTSAIHVKRIAGDPSDQTGESLHVLKGPQGRINRAIWGPLNRT IISAGEDAVIRVWDSETGKLLQESDKESGHKKAITSLSKSADGSHFVTGSLDKSARLWDTRTLTLIKTYVTERPVNAVAM SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD YFNIKI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 326 | 326 | 2.0E-186 | – | |
| PANTHER | 1 | 326 | 326 | 2.0E-186 | – | |
| Hamap | 1 | 326 | 326 | 75.823 | ||
| Gene3D | 1 | 326 | 326 | 1.2E-104 | ||
| SMART | 1 | 38 | 38 | 27.0 | ||
| SUPERFAMILY | 4 | 314 | 311 | 1.21E-61 | ||
| ProSiteProfiles | 6 | 228 | 223 | 30.453 | ||
| ProSiteProfiles | 6 | 47 | 42 | 10.341 | ||
| CDD | 7 | 314 | 308 | 2.69546E-51 | – | |
| SMART | 41 | 80 | 40 | 2.7E-10 | ||
| Pfam | 43 | 80 | 38 | 3.0E-8 | ||
| ProSiteProfiles | 48 | 89 | 42 | 14.552 | ||
| PRINTS | 67 | 81 | 15 | 1.2E-6 | ||
| ProSitePatterns | 67 | 81 | 15 | - | ||
| SMART | 135 | 174 | 40 | 4.8E-6 | ||
| Pfam | 136 | 174 | 39 | 0.051 | ||
| ProSiteProfiles | 142 | 183 | 42 | 12.012 | ||
| PRINTS | 161 | 175 | 15 | 1.2E-6 | ||
| ProSitePatterns | 161 | 175 | 15 | - | ||
| SMART | 177 | 219 | 43 | 2.8E-7 | ||
| ProSiteProfiles | 187 | 228 | 42 | 14.719 | ||
| Pfam | 188 | 219 | 32 | 2.0E-5 | ||
| PRINTS | 206 | 220 | 15 | 1.2E-6 | ||
| SMART | 222 | 261 | 40 | 150.0 | ||
| SMART | 277 | 316 | 40 | 1.3E-4 | ||
| Pfam | 283 | 314 | 32 | 7.5E-6 | ||
| ProSiteProfiles | 284 | 326 | 43 | 9.52 | ||
| ProSiteProfiles | 284 | 314 | 31 | 10.943 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Translation initiation factor activity | Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Cellular component | Eukaryotic translation initiation factor 3 complex | A complex of several polypeptides that plays at least two important roles in protein synthesis: First, eIF3 binds to the 40S ribosome and facilitates loading of the Met-tRNA/eIF2.GTP ternary complex to form the 43S preinitiation complex. Subsequently, eIF3 apparently assists eIF4 in recruiting mRNAs to the 43S complex. The eIF3 complex contains five conserved core subunits, and may contain several additional proteins; the non-core subunits are thought to mediate association of the complex with specific sets of mRNAs. |
Expression pattern of LotjaGi1g1v0345700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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