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LotjaGi1g1v0347100.1

Overview

Field Value
Gene ID LotjaGi1g1v0347100
Transcript ID LotjaGi1g1v0347100.1
Lotus japonicus genome version Gifu v1.2
Description Mechanosensitive ion channel-like protein; TAIR: AT1G58200.1 MSCS-like 3; Swiss-Prot: sp|Q8L7W1|MSL3_ARATH Mechanosensitive ion channel protein 3, chloroplastic; TrEMBL-Plants: tr|G7J539|G7J539_MEDTR Mechanosensitive ion channel-like protein; Found in the gene: LotjaGi1g1v0347100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:81427428..81435894) extracted from Lotus japonicus Gifu genome v1.2.

GTAATGGTGAAAAGGTGATCAAACTTACAGATTACAAATCGGTAAATGATATACCGATACAATATTAGAATCGGTTAATT ATTAACCGATATTGTTCTTCGTGTTCTGGGTAATGGGATGAAGGTGTTCATACTGAGGAACAATAACGGTAAATCATTTA CCGATTGGTATTTTGACATCGGCAAATCATTTACCGATGGGTAGTTTTGGAATAAAAAAAAAATGCTGGGGCGCGTAGCC TAAAGGGTGGGGTGCCAAACCCAAATCCCTTTGCAAAGTGGCATTATTTCCGTGGAATATTATCACTGATTCTCTTCTTT CATCCAACCTGTTTGGCATATCAGCATCGTACCTCATCGCATCACTATTTGCATACCAATTTTTCTTCTTCTTCTTCTTC TTGAGTTTCATACACGTGCAAATTTCCGAGCTTCGCAGAATCTTCTTCTTCAGTTTCTTACAAGTGTAAGTTTCTGAGCT TCCGAGAATTCATGCTTGCTATCAAACCTCGTCTTATGTTTTTCGCTTTTAAGGTTGTTATGTTGTTGTCTCTTATTCAG GTGTAATATCAAAGGATAAGATACGATATTGTACTTCAGTTCCATTCAACAATGGCCTATTTGGGTTCAATGGGATTGTC CCATGGCGTTAGGCTATTATACACTAGTGATAGAAAATGTAGTTTTTGTCAGGTATGTGATTATTCATTTGATTCAATTC AATTTATCTTCCTTTAGATTCAGTGCAGAATGTTGTTAGAGTTTTTTTTTTCCTTTCATTTTGATGTCTATTTTTGACAG AGGCCCTTGCCTGGTGACCGGTTGTGTTTTGTTACAATCAATCTTTCACCTGTTAGTTTGGTACGGCCTTCTTGTTTGTC AGTTTAATCTGTATTGCTTGATGGATGTAGTTTAGGGTTTAGGGTTTATGTGTTTCTTTTTGTTTTAGTCTAATCCATGG AGAATTTTGTTTTGTGAATTGACAGAGGCAGAATTCTTCAGCACTCCTATTTTCTGGATTACATGCCCCACTTAAGCCTG TACCTTCTAGATGTAATGTTTTGCTGTGTCGGTCTGTCCTAACGCCAGCTGGAGGGTTTGAGGCGCCGCTAGTGAAAGCA GCTACTATTTCTTTGTCAAGGTTCCTCTCTCTCTCTCTCTCTCTCTCTATTTATCTCTTTGTAATTGAGAGAAGTTTCTA AAAATTCGTTGATATTGATGTCCATATTTGTTATCGTTTTCCAGTTTCCCAATAGTGCCCTTTTCCATATTGCAGTAAAA TTGAAGTTTCATTGAGGTTGCAACTTGCAACTGTTATTGCTGACTATACTTCCTAGGAACTGATCCATATTTATTTCTGA TGTGTTTTTTGCTAAAAAAATTACTTTGCTTGCTACGGTCGTGAAGTTGGATAGTAGTTGCGATTGAGAGAGGTGTATCC TGCCAGCCGACAAACTTTGATATGGCAGGCACCATTAATTTCTATATGTTGGGTGACATTTTGACTCCTCTTCGTGCCAC TGTATGTGGTTAGCTATCTAGACTAGAGTAACACAAAAGCTGAAGCTTGTATTTCTCTTATATTTTCTGTTTTGCATCTC TTTCATATTTTGTTGAGAGGCATCTGAAGTATTAAGCTCTGGCTCCCCTTTTGGTGATGGTGGTGATAGAGGGTGGGTAG ATATTGGGAATCAACTAAACCCCACTGTGACTCTATATTGCTTATAATATGAACTTGTACAATTAACCCAAATGATATTA TGATATATGTTGTTTGCACTAGGTTTTATCGTCATAAATCATATCATATGCTGCTAAACTTTGCTGCTGTTGTGGCATCT TCTCTTCCCTTTTCATCTATCTATTGCTGAGTGCATTCTCTATGGAGATATTTAACTTTTGTAATTGATGTAGGTCATAT AATGCTATATCAAGACCAATTTTGCTTCAATTGATCCCTGCCCTTGGTATCATTGGCTTTGCTTTCTTTGGTCTTGAGCC GTTCCTGCGCTTGAGCAGGGTTCTATTTCTCCAAGATGTTAGCATTTTACCTTATTCCATGTGTTACCTAAATCAATTAA ATAGTATCATTAGTTGACACTGTTCAATAACATGTTTTCAGAGAGTTGATAGAAGTTGGAAGAAAAGTAGTTCACGTTAT ATTATGACCTCTTATTTGCAACCTTTGCTGCTGTGGATTGGGGTAATGCTTATCTGCAGGTAACCTTTTGGATCAACAAG TCTTTTCTACTGGATGTTTGAAAAGTCCTATTGGTATACACCTTGACACAAACTGTTTCAGGGATTTAGATCCACTAGTC CTACAATCAGAAACCGGTCAGATTATGAAGCAACGATTGCTGAGTTTTGTACGATCTTTGTCAACCGTGCTTACATTTGC TTACTGTTCTTCAAGGTAGATTTCATTTCTGGAAGAATCATGTCCACAGTTTTTGTAACCTAACCAAGTTACTTTTATCT CGCACCTCAATTGTAAGATAAGCTTCTGTTTTCTTATTGTTAAAACTACAAGTGAAGGCACACTCATGTGTATGCAAAAT TGAAACGTTTCTTAAGAAAAGTGGGAGGAAATAAATTAAGTACAGAAACAATGAGGAATTTACTGAATAATAGAACCTGG TAACTTAGAACTGTATATATATTATATAATTTAGGGAAATCAATGAGCTCAAGAGCTCTACAATAAGGTAGTTTTTCCAG AGTCTGGGACTCCTACCAGAGAGATATTCTCTCCTAACAGACTTCTCATCAAAAGCATGAATGCCTCTCACCCTCTAGTG TCTTTATTCCCCAAATACCCGCCCTGGAATCAAGAGACACGCCACTAACTAACTCTCATTCCCCTCCCCTGACTCTACTC TCCTTCTCCTAGTGTAAACTTTCCATATACTGGGCTTTCCGCTAGATGCTCCTATAATTGGGTCCTCATTGGAATCAAGC TCAGGTATCCTATCAAATTTACTTATCTAAGATAATTCAACTATTAATAAATTAGTAATTCAATTATATTTTTAATTGGA TGATTTTTGTTGATTCATTTAACTAATATGCATAAAATAGAGTGCTGAGTCCTGTGTATTGTTTTCTCTCTAATAATTAT TTCAGTTCCTCATTTCTTACTATTACATGTTTGGAGTTCTTTTTTTTATTTAACTTATTATTTGATATCGTACTTCGTAT TTTCAGATTAATTCGACAAGCACAGAAATTCTACATGGACACAGATGACTCCAGTGATGAAAAAAATGTATGTTTCTGTT GCAGATCCTTGTCATGTTTCCATTTCTGTATGCATAACATTTTACTAGAATAATAGTTTAATTTTGTGGAGTCCACATGA TTTAAGCTTTATATGAGTTATGCTATTCCAAACGAAGATTGCAAACATAGACAACCTCTAGTGAATTAAATCTTTGATCG TTTGAATTTTGTTTTAACTTAGTTTTGAGTGTGTGGGTTGAAGAAGGGTAGTGTTATAGGATGATTTTTCTCATTTTCAT GAATATTTTGGCGAGGGAGTTCCCATTGCTTATTGAGTATTGACTCCTAAGGGCATTCTTGTAGTGTAAACTCAAATCTT ATTCAATGTAAATATGTATTGTGAATGGCAGATGAGCATTGATCTTATTGGGAAAGCTGTATATACAGCAATATGGGTCG CTGCTGTCTCATTGTTCATGGAGTTGATTGGTTTCTCCACGCAGAAGTGGTTGACTGCTGGTGGTTTGGGCACAGTATTA CTTTCCCTTGCAGGTCGTGAGGTATGGTACAGGTTCTTTGATACTGTCTATGAGAACTCTTGGGAATTATTATTGTTGTA CAACTATATTTCCTCATTTAACTTTACGACATATTGGCACGGTTGTAGTATAGATTTAATTGAGGAAAGTGGCAGTAGGG ATTTGCTTATATTATGTGACTATATAAATACCTTTGTAAACTTGAGCTTTTTTATTTCAGAAATAACACTTTTCAGTTTT CCATATATTTTTTTCAAGTTGGTATTAGAGATTCTGATCTAGAAGAGTCTGCTTTCGCAGTAAAACTCTAGCTGTCTTCG TTGCTGTTGTCTAAGGCTGCCTTCATTGCAGCCTCCAGCACCTACATTGTGCCCTTAGAAGGGAAGACCACCACTGGCAG CACTGTCTCCAATCTCATATCTTCGGATGTGTGGTTTTTGTTCATGTCCATCACCAAAATCGTTCCAAACTTGATCGTCG TGCTATCATGTGTTTTCATAGAGTACACTCTTGACAAAAAGGAATATAATCTTATCACCCTCCAAATCATCACTTCTTTG TCTCCATGAATGTCACTTTTAATGTCTGATACCAAATAAGTCATTGACATTGTTCATAATCAAGTCTTTCATGATAGAGA AAGCATATAGAGATATGCCAGCACTTAGTCAAAGAGAAATTAGGCAAGTGTTTGGTCACTAACAAATGTGTTGACTAGAG TACTTCTAACAGAGCGATTTCAAGATATTACTAGCAAGCTAGGAGTGATAGATATTCATTTACCAGGTTGAGGGGGAGTG TTGGGAATCATTATTATTGTACAACTGTATTTCCTAATTTATTCTTTAGGAAGGATTTTACAGTTATAATATATATTTAA TTTAGGAAATTTGTAATGGGAATTTGTATATATTATGCAAATAGTAATATACCTTGTACACTTGAGCCCCCTTTTTTTTT TCAGAAATAACATTTTTCAGTTTTCCATCTATGTTTTCAAGTAGAACAATTAAGTCATCTTTGTCAATGCATTTTTTATG GATCATCCTTTATATTTGATTTCATCAAATTCCATAAGACAACACTTTGAGGCATAGCTGTTATCAAACACGTAGAATCT TGTTTGCTTCTATGATCACTTCTTTTTTGTGATACATACAGATATTTACAAACTTCCTTTCAAGTGTAATGATCCACGCA ACTCGTCCATTTGTGGTGAATGAGCGGATTAAAACGAAGATTAAAGGATATGAGGTTTCTGGTAAAGTTGAGGTTTGTAT CTATTATCTAACTTACTGACAAGGTTGTTGAGGAGAACAGAAAACATAATGTTGGTCCAGTGGTTTAGGCCTTAGAGGGT ATTTTTCTTAAGTGTATATATTTTATTCTAATTTTGTTTATTTGAATTTCATATTTTCTCTAGCATGTGGGATGGTGGTC ACCAACACTAGTTAGAGGTGCTGATTGTGAAGCAGTTCATATTCCTAATCACAAGTTGAGTGTAAATGTTGTGAGGAATC TTAGTATGAAATCTCATTGGCGCATTAAGACTCATCTTGCTATTAGTCACATGGATGTTAGCAAGATTAATGTGAGTACT CTTGGTGTACTTTTAAAAATTGTTCAGGAACCTTCTGATGGCTAACTCATCATCTGAAAACCAAGACAATCTCTTTCTTG ATTTCTTTATGCAGAGTATCATAGCTGATATGCGGAAGGTTTTGGCGAAAAATCCTCAAGTAGAGCAGAAAAAATTGCAC AGAAGGGTTTTTTTGGAGGATATCAATCCAGAAAATCAGGCTCTTATGGTTGATACTTTTTCTTTTCATTGGTTTATATA ATATTTTATGAGCTACAAATTCCAACTTCTTCTTTTCTTCCTATTTATCTTTAATTTTTGTCTGAAAGGCTTTTTAAGGC TCGCCATGCATGTTGTGGCATAGCTGAGGCAAAATAACTCTTTCCTTTGCTTGTTTAAATTTCCAGAATTTACCTTTTTA GGCTCTTCTGCTAGGTCATATGTATAAAAGTTGGGCGTGTCTTTAATCTTTGCGAAATACATTTTTATTCCTTCGTATTA ATTTTATTATCACATGATCATCAAATTAGGAAATTTTGTTCTTTTTTAGGTTCTCCTGCAGTACTGAGTACTGACACTGA TGTAGTGAAAACAACAAAATACTTGTGTTAAATTAGCACAAGCAGTGACCACCCCCCCCCCCCCTTTCCCTTTTCTGCAG TGCTTTTTTCATCATTGTTGTCTATTCAAAACAGTCTTGAGCTCATGTTTGAAGCTCTAGATGTTTTCTGTTGTCTCCAT AGCATGATGGGTTTTAGATAATTTTTTCTGAAATCCGGGGCAGATTATCAAGTAATTCTGGTGTCAAATTGATAAAGCGT GTATTTGGATATCAATTGAATGAAACGTGCTCAAACTTTTAACTCAATCCACAAGAAAAGCTGTGTTCACTTTTTATCTT AGAAGTGCGTGTAAATGTCTGTTTGCACTGACGCAAACAGATAAGCAAACACACCCAAAGCATCTCAAATATGTTTTGAA ACTTGGTTTTACCCTATAGGTTTTGCTCTTCTTTGCCACCATCAATGAATCAGGTTCTAGACTTCTAGTAGCTCTGACTA AAGTCAAAGGCTTTGTCTTAAAATCTCCTTCACAATCACATTTGTTCCAGAATGCTTACAAAAACTCTTTTTATTTATCA TATGTTCATTCTACGAGGTTTGTCAAATTTTATTCATACTATGATAGATTACCTGTGTCTTTTACGTCTTATCAATCTAT ACTTTCGAGGCATTTGATTAGCCATCTTCACTGTGGCAGGAATGAAGTATTTTTTTCATTAACATCTTAAAATATGTTCA GTTCTGCTTTTTGCCTCTCTTATTGTTATCTGCTCTACTATTCATTGTTAAGAGTTGTCACTTTTCTCTTTTTCATTTCT CAAAGGCCATTATCTTATAATTGCCTTTTTCTTTTACAGATATTGGTCTCTTGCTTTGTTAAAACTTCACATTCTGAAGA GTACCTCCGTGTTAAGGTGAGACTAGATTGCTTATAGCAATTGCTATTGCATAAAGTGTGATGGTGTAACATAATACTGC TTATGTAAATTTGCTAATGCAATCCTTTTAACTTAATTGTACTAGCAGTATCGTCACCCCCTCTTATGTTTTGAAACTCA ATTTTAAGAATTTTTATTGCTATTTTTATTTCATATGCTAACTTCTATTTTTTTTAAACTATTCTTGTAAAACACTCTAC TTAGACCTGGTCAGAATTTGAAGAATTTGGGGTCCACATTATGGCTTATTCTACAGGCTATATTTGAGAATATCATGTTA TTGTTTTACTAATATTCAAATTATTCTGTTGGTTAACAGATAAGTGGCTCACTTTAGCTTTGGTGATTTATAATTTTGTC ATATAAAACAGGAGGCAATTCTCTTGGATCTGCTAAGAGTCATCAGTCATCACGGAGCTCGGCTAGCCACTCCCATTCGC ACAGTTATTAAGATGTACAGCGATGTGGATTTTGAAATTGATCCATTTGATGACACTACTTTCACTCGTTCCAGAGCAAA GGCAAAGCGTACATTCCCACTTACAGATCCATCTCAAAATTAAGCCTTCAATTCACTCAATCGTTACAAATGAATGCGAT GGTTGACAAAACCCTGCTGCCGACTTCAAGGTAGAATCTGATAAATTTGCTGTGACGTGGACCCTCTCATCCAGTGGAAA CTCCAAGGATAAACTAAAGGCAATATCTCAAGCTAAAATCCAGAATATGTGTTCTTATACTTTAGTCCAGAAGACCTCCA AATCCCTAGAGCCCAAAAAGGAAAGAGCAGGAAATGTAGAAAAGGGAACATCACCAAATATTGTTACATGCAGTGAGTCT TGGTTATCAAAACAAGATAAAGAGATCTGCTGTGTACTTATGATCAGTTATATAATGTTTGGATCGGCTTCTTTTTCATC AGAATCAGTTCTAAAATCCAGGAGCTACTCACATAAGTTTCTACTCATAATTGATTTCGTCTCCAGAGTCATTTGTATAA GAGTTTACAAACATGCACTTAGTTCTTCCTTTGAACGGAATACTATACCTGATGCTGTCCTGGTGAGCTCGAAGTAAACC CTTACCAGTGATTAAGAAATAATGCCATCTATTCCTCTGGAATCACTGGAATTTGCTTCCAACAGACTGGTAGAGAATCT TCTATTAGCAAAGATAAGGATGGTGAGGATCTGTCTCCATTTTCTACTCCCAATCAGAACCTCTGAATAACAAACAAAGC TTTTTGGCGATAGAACAGAACTCTGCATCTCCCTTTTTTGTTAGTTTGTTAACTGTTAGTTGATGGTTAGTTAGAAAATG AGCTATCTGGTAAAGTTAGTTTAATGTTAGATTAGGTACTTTAGGCATTCCACTATAAATGTGTAATTGTTGTATCATTT CCATCATCTTTGAATCAATAAGAAATTCCCATTGTTGGATTCTCTTTCAAAAATTATAAAAGTATATACTTATTTATTTG AAAATAGATAATAAGTCTTCCCTTATTCTTCCCTCTAAAAATCATCTCCCAAACCACCCCTAGGGAACTCTCCACCTTTC CTTTTGTTCGATCCATCTCAATTTACTGAGATGGTACTAGAGCTTCACCAATGGAGCTCACTACTTC 

CDS sequence (LotjaGi1g1v0347100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCCTATTTGGGTTCAATGGGATTGTCCCATGGCGTTAGGCTATTATACACTAGTGATAGAAAATGTAGTTTTTGTCA GAGGCCCTTGCCTGGTGACCGGTTGTGTTTTGTTACAATCAATCTTTCACCTGTTAGTTTGAGGCAGAATTCTTCAGCAC TCCTATTTTCTGGATTACATGCCCCACTTAAGCCTGTACCTTCTAGATGTAATGTTTTGCTGTGTCGGTCTGTCCTAACG CCAGCTGGAGGGTTTGAGGCGCCGCTAGTGAAAGCAGCTACTATTTCTTTGTCAAGGTCATATAATGCTATATCAAGACC AATTTTGCTTCAATTGATCCCTGCCCTTGGTATCATTGGCTTTGCTTTCTTTGGTCTTGAGCCGTTCCTGCGCTTGAGCA GGGTTCTATTTCTCCAAGATAGAGTTGATAGAAGTTGGAAGAAAAGTAGTTCACGTTATATTATGACCTCTTATTTGCAA CCTTTGCTGCTGTGGATTGGGGTAATGCTTATCTGCAGGGATTTAGATCCACTAGTCCTACAATCAGAAACCGGTCAGAT TATGAAGCAACGATTGCTGAGTTTTGTACGATCTTTGTCAACCGTGCTTACATTTGCTTACTGTTCTTCAAGATTAATTC GACAAGCACAGAAATTCTACATGGACACAGATGACTCCAGTGATGAAAAAAATATGAGCATTGATCTTATTGGGAAAGCT GTATATACAGCAATATGGGTCGCTGCTGTCTCATTGTTCATGGAGTTGATTGGTTTCTCCACGCAGAAGTGGTTGACTGC TGGTGGTTTGGGCACAGTATTACTTTCCCTTGCAGGTCGTGAGATATTTACAAACTTCCTTTCAAGTGTAATGATCCACG CAACTCGTCCATTTGTGGTGAATGAGCGGATTAAAACGAAGATTAAAGGATATGAGGTTTCTGGTAAAGTTGAGCATGTG GGATGGTGGTCACCAACACTAGTTAGAGGTGCTGATTGTGAAGCAGTTCATATTCCTAATCACAAGTTGAGTGTAAATGT TGTGAGGAATCTTAGTATGAAATCTCATTGGCGCATTAAGACTCATCTTGCTATTAGTCACATGGATGTTAGCAAGATTA ATAGTATCATAGCTGATATGCGGAAGGTTTTGGCGAAAAATCCTCAAGTAGAGCAGAAAAAATTGCACAGAAGGGTTTTT TTGGAGGATATCAATCCAGAAAATCAGGCTCTTATGATATTGGTCTCTTGCTTTGTTAAAACTTCACATTCTGAAGAGTA CCTCCGTGTTAAGGAGGCAATTCTCTTGGATCTGCTAAGAGTCATCAGTCATCACGGAGCTCGGCTAGCCACTCCCATTC GCACAGTTATTAAGATGTACAGCGATGTGGATTTTGAAATTGATCCATTTGATGACACTACTTTCACTCGTTCCAGAGCA AAGGCAAAGCGTACATTCCCACTTACAGATCCATCTCAAAATTAA 

Protein sequence (LotjaGi1g1v0347100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAYLGSMGLSHGVRLLYTSDRKCSFCQRPLPGDRLCFVTINLSPVSLRQNSSALLFSGLHAPLKPVPSRCNVLLCRSVLT PAGGFEAPLVKAATISLSRSYNAISRPILLQLIPALGIIGFAFFGLEPFLRLSRVLFLQDRVDRSWKKSSSRYIMTSYLQ PLLLWIGVMLICRDLDPLVLQSETGQIMKQRLLSFVRSLSTVLTFAYCSSRLIRQAQKFYMDTDDSSDEKNMSIDLIGKA VYTAIWVAAVSLFMELIGFSTQKWLTAGGLGTVLLSLAGREIFTNFLSSVMIHATRPFVVNERIKTKIKGYEVSGKVEHV GWWSPTLVRGADCEAVHIPNHKLSVNVVRNLSMKSHWRIKTHLAISHMDVSKINSIIADMRKVLAKNPQVEQKKLHRRVF LEDINPENQALMILVSCFVKTSHSEEYLRVKEAILLDLLRVISHHGARLATPIRTVIKMYSDVDFEIDPFDDTTFTRSRA KAKRTFPLTDPSQN 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 491 491 2.0E-295
Phobius 1 107 107 -
PANTHER 1 491 491 2.0E-295
Phobius 108 130 23 -
TMHMM 108 130 23 -
Phobius 131 150 20 -
TMHMM 150 172 23 -
Phobius 151 171 21 -
Phobius 172 190 19 -
Phobius 191 208 18 -
Phobius 209 239 31 -
Pfam 239 448 210 1.8E-28
Phobius 240 258 19 -
Phobius 259 263 5 -
Phobius 264 283 20 -
SUPERFAMILY 282 352 71 6.54E-7
Phobius 284 494 211 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
Biological process Transmembrane transport The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0347100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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