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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0348600 |
| Transcript ID | LotjaGi1g1v0348600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Divalent-cation tolerance protein CutA; TAIR: AT2G33740.2 Nitrogen regulatory PII-like, alpha/beta; Swiss-Prot: sp|P93009|CUTA_ARATH Protein CutA, chloroplastic; TrEMBL-Plants: tr|G7J568|G7J568_MEDTR Divalent cation tolerance protein, CutA1 family protein; Found in the gene: LotjaGi1g1v0348600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:81732727..81735219) extracted from Lotus japonicus Gifu genome v1.2.
CAGGATTTCTTCCGAAGGAGGACTGTCTTATTAACAAAAAAAAAAACAGTAAACATCTATAAAGACACGTGTGACAATCA AGGGCAAAGCAAAAGATTACTAGTTGAGGGCATCAAGGAAGGGAGCAGAAGGAAGCTTGATGGACATGCGAAGCAGCTTA TAACAATCTCCTCCTCTACCAAAAATGGCTTCTTCCACCACTTCCACACTCTTCTCCACTGCTCCTCCATCCTCCGCCGT CTCCTCCTCTGTGATACGGCGTCGTTTACCCCTTGTCGGCGCGTTTTGCATGCTCACTCTAGGGCTCTCCAATTTCTACA GGCCCTTGTATTCCTCTGCTCTCAAAACGGGGTGCGTTTCATCGCTCTTACGGTTTTCGATTCTCTCTGGTTTTCGATTC TCTTGATCTCTCTTTTCATTTTGTTCAATTTCCTCTGTTTCAGATCTAGTTTGGCAAAGAGAAGTTACAGTATTAGAATG GAAGGGAACACCAACAACACCACTGTCCCAAGCATCGTTGTCTATGTCACTGTTCCCAACAAGGAAGCAGGTTGCACGAG GAGCAATGCTTCATGTTCTTTGTTTATTTGTTGTAAATTTTGTGTCTTTGTTTTGATGTTTGTGTGTTGATTTGTTCTGC AGGGAAGAAGTTAGCTGAAAGCATTGTCAAGGAGAAGCTTGCAGCTTGTGTAAACAGAGTACCGGGTAACAATTTTCTAC TCCAGATTGCTAATGTTTCAGTGGAATTTGTGAGGAGCTTCCATAAATTGATTATTGAATGAAATCTATGTATGTCCTTG TTCAGTGATGAGGCACAAATATGATACTGCTGAATTCCTACCATATGACTTAATTTTACTTAAATTTTTGCTGTTACCTA GTTCCCCATGATCTAACACCAGGCGGATGAACTAAAGATATGCTTATATATTAGATTAGTAAGCAAAGACAATGCGCATT AAGGTGTGAACTTCCATTGTGGATTAAAACTTTTGGTGAAAAGACTCACTTCATATTAAGGGTTACTTAGCTTGCATCTA ATTCACTTCAAACACTAATATTGACCAATCTATGCAATTGCTAAATCGTAACCTATAAATAGATTTACCCTGAGGCATGG TCAGAGTTACTTTTTCCATCCTTTATCATGGCGTTAGCTGCGTGCAGGAATTTGACACTTGAATGAGTTCACGACTTGAC ATCTATCTTCAGTTTGAGTTGTATAATTGTTTGACATATGCAAATGTAATCATGTCAAGCATCTTTGTGATTGTTCTGGT AGGGAAGAAAGGATTGGATTTGATTGTTGATATGCTCGAGTTGATTTGTGTTGTAACCAAGTTGATTGTATTGTTTGCAT GTCTGACTTTTAAAAGCAATGTGTATTATGTCTTGTGCAGGTATTGAATCAGTATATCAGTGGCAGGGAGAGGTATGATC TAAAATATTATCTGTTGACAATGATAACTATTAGGATATGAAATTACTAATTGGAATAAAATATTTTGTTTTAAAATGTT GTCATCCTAAAGTTCAGAAGTTACAATTTTCTAGTGTGCATTAAGGTTCTTTTGGAATTGTTTAAGAAAATTTACTGCAA AGTATTGTTTGTAACTTGATTTTGCTAGCTTTCTGTTGCAAATTGACAGATCCAAACTGATTCTGAGGAACTTCTGATAA TCAAGACTAGGCAATCCCTTCTGGAACCATTGACAGAGCATGTCAAAGCAAACCATGAGTACGAGTAAGGATTCTTTTAA ATATCTGGCAATATTGAACTTGATTTGTGATAAAATGAAAAGTTCTAGTTGCATTTGTTATTTGATCCTAAAAGACAGCT TTAAGAAAGGAACACTTGAACCATATCTGCCAAGACTGAAGAACTTTGGCATTAGATCCATGTTGAGATAAACTGAGGTG GAATTATGGAGAATAGTAATGCATTTACATGCTTCTGACTTTTTTCTTTTGTCTTTTTTTCAGTGTGCCAGAGGTAATCT CCTTACCCATCACTGGCGGCAATCTTAAATATTTAGAATGGATAAAGGAGAGCACAAGGGAGTGACTATCAAGTTTATAG TTAGAGGGTATGGGCTCAAGAGATCTTGTATCTCTGTTCAATAAAGCTGGCATGTCATGTGTAACTAGGTAAGGAGATCT GAATATTACAATGTAGAGGATGTGGGTCATTCTTGTATTCTTCACTAAGATCTTATGTGCAGACCTTCTTTTAGATGATT TATGTCTTTCCTGTATTAACATTTGCACCCACTTTCCTGTTACTCTGTCACCTCCCCCCCCCCCCCCTTAAACAAACTGA AACTTCAGGTGCATTTCATATTTAAGGTAGTTTTGCTTTGAAAGAAGCTAAATATAGTGGTACATACTGCACATGGCCAC CATTTATATAGTGGCGATTTTTATTTGGATTCAAATTTTGTTAATCTTGGATCCAAACTACAGTTAATAATTCTATCGGT ATTTCAATAACAG
CDS sequence (LotjaGi1g1v0348600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCTTCCACCACTTCCACACTCTTCTCCACTGCTCCTCCATCCTCCGCCGTCTCCTCCTCTGTGATACGGCGTCG TTTACCCCTTGTCGGCGCGTTTTGCATGCTCACTCTAGGGCTCTCCAATTTCTACAGGCCCTTGTATTCCTCTGCTCTCA AAACGGGATCTAGTTTGGCAAAGAGAAGTTACAGTATTAGAATGGAAGGGAACACCAACAACACCACTGTCCCAAGCATC GTTGTCTATGTCACTGTTCCCAACAAGGAAGCAGGGAAGAAGTTAGCTGAAAGCATTGTCAAGGAGAAGCTTGCAGCTTG TGTAAACAGAGTACCGGGTATTGAATCAGTATATCAGTGGCAGGGAGAGATCCAAACTGATTCTGAGGAACTTCTGATAA TCAAGACTAGGCAATCCCTTCTGGAACCATTGACAGAGCATGTCAAAGCAAACCATGAGTACGATGTGCCAGAGGTAATC TCCTTACCCATCACTGGCGGCAATCTTAAATATTTAGAATGGATAAAGGAGAGCACAAGGGAGTGA
Protein sequence (LotjaGi1g1v0348600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSTTSTLFSTAPPSSAVSSSVIRRRLPLVGAFCMLTLGLSNFYRPLYSSALKTGSSLAKRSYSIRMEGNTNNTTVPSI VVYVTVPNKEAGKKLAESIVKEKLAACVNRVPGIESVYQWQGEIQTDSEELLIIKTRQSLLEPLTEHVKANHEYDVPEVI SLPITGGNLKYLEWIKESTRE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 18 | 18 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 18 | 18 | - | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 2 | 13 | 12 | - | – | |
| PANTHER | 12 | 181 | 170 | 4.8E-66 | – | |
| PANTHER | 12 | 181 | 170 | 4.8E-66 | ||
| Phobius | 14 | 18 | 5 | - | – | |
| Phobius | 19 | 27 | 9 | - | – | |
| Phobius | 28 | 45 | 18 | - | – | |
| Phobius | 46 | 181 | 136 | - | – | |
| Gene3D | 71 | 181 | 111 | 7.5E-46 | ||
| SUPERFAMILY | 79 | 180 | 102 | 2.52E-36 | ||
| Pfam | 80 | 177 | 98 | 3.8E-38 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Response to metal ion | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a metal ion stimulus. |
Expression pattern of LotjaGi1g1v0348600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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