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LotjaGi1g1v0349700.1

Overview

Field Value
Gene ID LotjaGi1g1v0349700
Transcript ID LotjaGi1g1v0349700.1
Lotus japonicus genome version Gifu v1.2
Description GEM-like protein 1; TAIR: AT1G28200.1 FH interacting protein 1; Swiss-Prot: sp|Q9SE96|GEML1_ARATH GEM-like protein 1; TrEMBL-Plants: tr|A0A0L9UGE2|A0A0L9UGE2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0349700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:81958250..81963354) extracted from Lotus japonicus Gifu genome v1.2.

TGGAAAAGTCAAAGGAAACATAAACAGCCAGACCATTATTTTTTCCTTTGAAAAACAATGAACGGTGAGATCTAGAAAGA TCGTTGAAGAGAAAGACAAAAGCCTTCTCTAACAGTCAAATCTCATTTGACGGTTTTCAAGAGAATCATCGATCGACCAT TTCAATTCAATTCAACGAAGTGCCACCCACGTTTCATTTCAGTCCTCAATCATCACCACCGCTTCATCGGAGACGAAGAT CACCAATATGAGCGGCGATCAACCACACCCCCAACCCCCCACCACCACCACTACCGCCACTACCACCACCCCCACCAAAC CCCATGACTCTGATTCTCACTCCACTGAGTACGCTCCTTACCCCAAACTCGACCCCAACGACGTCGTTCCACCACCACCA TCTCAACCCATCAACACTCCTTCTCCACTCGATGCACGCGGCGATGCCGCCACCACCATGCCGACAGAGTCCAATCCCTA TGTTTCTCCCTCGCCGGTTCCCACCTCCAATTCTTCTGCTAAGAGTAACACTCACTTCTCTCTCTCTCTCTCTCTCTCTA TTTATGATTTCCACCATGTTCATGAATCATGCTACTTATACAATTCTTGTTTGGCAGATACTTTGGATTCGGTGAAGGAT GCTCTCGGAAGATGGGGTAAGAAAGCCGCTGAAGCTACCAAGAAGGCCGAAGATCTCGCCGGAAACATGTGGCAGCACTG TATGTATCTCAATTCTCTCCGTTGTTTCATTAATTTTGATCAAACTTCTAAGAGATTGAAATATAGTTTGCATTTTGATC CCCTTTTGTTGATTTTGCTGATGATGCCCTTTTGGAATAGTGAAAACGGGTCCTAGTTTTGCTGATGCTGCTGTGGGGAG GATTGCTCAGTCAACAAAAGTTCTTGCTGAAGGGGGCTATGAGAAGATATTTAGGCAAACTTTTCAGACTGTTCCGGAGG AGCAGCTTGTTAGAACTTATGCGTGCTACCTTTCAACCTCAGCTGGACCTGTGATGGGGGTTTTATATTTGTCGACTGCG AAGCTGGCGTTTTGTAGTGATAACCCGCTTTCTTACCAGACGGGTGAGGAGACTCAGTGGAGCTATTATAAGGTCAGCTT CAAGTTACTTGCTTGCTTGTTATTTCCTTCTGTTGTGAAATGCAATAAATATGTGTGATTTGTCGTGCATTCCTGATTCG GTAGATTGATTCGAGGCCATGATTTGTGAATAGCTTCATTTTTTGTGATTATTTCCTAATAGTAGATGTTTGTTATTATT TTTAGAGATGAGTTGAAATAATTTAAGTGCCGGGGTTGCTCACATTCCGAAACAGGATAATTTAATAAGACATAGGTCCG CTCCCGAGTTCCGCTATGTTTGTTTTTCTTGGAATTAAGGGTTACTTTTAAGTGCGGCAGTGATCTAACAGGCTTGCTGA TATTGTTTGAAATTTTTAATAAAAACTCAAAATGTGTGTGATACATTTTTTGTTTTTGTTTTTGGAGGGTGAGGGATAAC TTGTTAACACGTGGTACATGATAACTTCGGTTCTGGAATTCTAGTAGTTAGTAAGAAAACGAGTAGCTAATGATCTGTAT GTTGAAATTGAGAATAAATGTTTTCTTCAGATTTTGATTAGGGATTACAATTATATAGTTTAGTGCTCTGTTTTTTAATT CTTATCAATGATGCAATTTGAGGAGATTAAACTGTTGCTAGTGAGGTATAATGATGATTTGTTTGTTTGGTTTTGCTGTT GGGACTTGGGAGCCTCGTGAAGAAAAAAGCTACGAAATGTAGTTTGTGAAGTTATCGTGCTGTAGATTGTGTGCTCACCG TCAATCCGAGCACTATATTTAAGGATTATTGTGTTATTTAGGACTTACTATATTACAAGATTCATAATTAAGAAAATGAT AATTGATGTTGAGTCAAGGATGGTAATCATAACTATGTCAATTAGGGAGGCTACTCCATTGAGTCATTGACTGATAAACC TAGAATGCTGCTCTGACATAGTTTTAGATACTCTTTGAAGGACGAGAAATCTCAATATATGTTAAAGTCTGAATTACTCA AAGAACTTAAGGGGTATTTGTAACTCGTGCAATTCTAGTTAAATATGAAATTCTAGATAAATTTTAAAAATATCAAACCC TAATAAATTTAAAATTTTGGATAAGTAGTATTGAATGTAATATTCTAAAAAATATAATATCTGAAAATATAAAATCAGAA TAACCTAATAATCCCTTCAAGGATTTGACTCCTAAACTGGGGGAGTCACTTCACAGAAAAATTATATTTATAGTCATTGA TTGAAAAATTTGATAGGCCCTTAAAATACATGTATAAAAGGGGAGGAAAACAGATTGGGCCAAAGTCAACGGCCTGCTGG TTTATGAGAAGAACAAGAAGAATTAACAAAAATAGGATGGAGGTGGAAAACTAACTGTCAGGGAAGGGATAGAAAATCAT AACCAAATAGGGACAGTTGAAGTGCATGTGAGAATGTGTGGGGATTCGGGAATCAGTGGAAGGGGAGGAATAACATTACA AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGTATGGAAAAATTGGCTTAAGGGACTAAGGG CGTGAGGGATGGCTACAATTCCTGAGTCTTATTTACTTTTTCATTCTTGAGTGTTCTGTTCCCAGGGGAGTTTAGCTCAG TTGAGATGATAGAATACTTAAATTTCAACATTTTTGTAACCAAGCTTGATTTAAACTGTATCTCAAAGTCACAGCACTAC AATTTGAAAATTCATTTTTATTTATAGGAGTTGAAGATTTTCTGTGGACTATCAAGTCCTTGATAGTATTATCATTCCTA GTCCCAGCCCTTGTCCCTGTCATAGAGGAATTATTGGATGAATTGGAGGGAGCTGCAATTTTCTCAAAGCTGGATTTGAA ATCTAGGTGTCATCAAATCCGTATGAGGGAGTGTGACCTACATAACACTTAGAACCCATGAGAGACATTATGAATATTTG TCTTATTTGATGATGCCCTTTAGGTTAACACATGCCTCATCTACCCTGACATTAAAAAGAGATAGAGGGTGAAAAGGAGA GGGGACAGGGGAGTGTGGAAAATTTGGTGTGAAGCAGTTAGAGATAGGAGGGGTGGCTGCACTTCTTAATGCCAGTCTTA TTTTCGTTTTCATTCTTGAGTAATCTGCTTCTAGGGAAGTTTTGCTCAATTGCAAGGAGCTTAGCTCCCTCATTTTCGTA TAATAGAAAACTTAATTTTCAATTCAGAATACTATATAATTTGCATAGGTTGATTCCTTGTTTAAACTTTAAATCCTTAC AATAATAAGGCTACCCTGAAGAAAACTTCAAGTCTTTTGCGAAGGGAAAAAACTGAAAGTCTTTTACGTACCTGCATCTA GTTGCTTTTCTTGGGATTGGTTGATTTGGTTCCTCTCAGGGTATAGCACTTGACATGGCATTGTGAAAATTTTGTTTTCT TTCTCTCTTGATAGACATTAAATAGGTGGGACTTCATCATAATTTATTTAACTCCTCAACAGAGATAGACATGAAAATAT CACATGACAAAGTTGGGTGAAAATTTGACATGAAATAATCCGTTCATAACCTTTAACATGTTGAATGTTGTCAGCACTCA TTCAGTTACATTCATTATTCTTTGGAGGTAATAAACAAATTAAATGCCTCCAAGAGTTATTTTCAATTCTTTAAGTTTTA GAGTTTTTAGACAGAACTCTATGTATGTAACCCTTAGGTAATTTGGTCTACAATTTTATTATTTAACTTAGTGAAGTTTA TGATTTCTATTTTCTCATATAAATAGAAGATCCTAAGAAGATTGAACCCACACTTGTTTACTTGCCATTGTGATATTCCC TTATTTCACTAATTTCCCATTTTCAATCACATTTTTTCACATGTATACTTTCCTTCTCATGCAATAGGTGGTCATTCCAT TGCATCAGCTGAGAGCGGTGAACCCTTCAATAAGCAGAACCAACCCATCAGAGAAGTATATACAGATTATCTCTGTTGAC AACCATGAGTTTTGGTTTATGGGCTTTGTGCATTATGATAGTGCTGTTAAACATATTCAAGAACTATTGCAGCCTCAGTG ACACACATGGGGTCGAAAAGCACCATGTAATATACCGAAGATGAGGTTTGTGTTGATAAACATGAAACGTTTTATATTCC TTTGCCAGTTTAGACGCCTAGTTTGTGGAGCTGTAAGGATATTATGATTGGAAGTTGAAACCCGTTCATTATTTACTGTG TATGTGCTCTACATGTGTGACTTCATATTACTTTCTAAATGTGAATGGCAATTGATTTGTTGTTTTAGTTGAACGAATAT ATACTATGCATTTACTCTTTGATCTATTAATTCTCCATTTTATTTTATCTATTCATATAAATCTCTTGGAGTTGGGCCTT GCGAAGTTGCAAGCATTGAAACATTGAGGAAAATCAGAACTCATGCCTTTTTCCTTCAACGTGAAGTTACACTGTTGTCA ATCAAAGTGAACATGATCATGTTTTTTAAAAATATTGGGCATGTTATAAGAGTTTCACTGAATAACAGGGAAAAACGTTT TACAAAATCATCCAATTAGAAGCCATTTATCATGTCTTAGTTAAACTTGTAAAACGAAAAAGTTGTGATTGGATGCATGT GTAGAAGAATTCTTTACACAGTTAGTGCATATAAATTAAATTCATGCTATAATTTATGAATGCTAATTTGATGTTATAAG TTATTTATTGTTGTATTGATTATATATTATGTATAATTTTAGATTTATACAGGAAAAAAGTTAAACTAAAATAAATAAAT AAAAAATCAATTCAATTCAGACCGCTTGGATGATAAAATGACTGACATGATTTGAGTATTGGTCTGAGCGAGAAATTATC AAAAATGTTCTCCAGGCCCATCTTTGTTGTTATTGAGCTATTGTCCAGATCAAGTAGGGTCATATTCCAGAAACGTAAGA TTGTGTAGTCTATTTAGCCCTTTCTATTTGAAACCCACCAGGCCTCTCTGCATTATTAATTTTCT
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0349700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGCGGCGATCAACCACACCCCCAACCCCCCACCACCACCACTACCGCCACTACCACCACCCCCACCAAACCCCATGA CTCTGATTCTCACTCCACTGAGTACGCTCCTTACCCCAAACTCGACCCCAACGACGTCGTTCCACCACCACCATCTCAAC CCATCAACACTCCTTCTCCACTCGATGCACGCGGCGATGCCGCCACCACCATGCCGACAGAGTCCAATCCCTATGTTTCT CCCTCGCCGGTTCCCACCTCCAATTCTTCTGCTAAGAATACTTTGGATTCGGTGAAGGATGCTCTCGGAAGATGGGGTAA GAAAGCCGCTGAAGCTACCAAGAAGGCCGAAGATCTCGCCGGAAACATGTGGCAGCACTTGAAAACGGGTCCTAGTTTTG CTGATGCTGCTGTGGGGAGGATTGCTCAGTCAACAAAAGTTCTTGCTGAAGGGGGCTATGAGAAGATATTTAGGCAAACT TTTCAGACTGTTCCGGAGGAGCAGCTTGTTAGAACTTATGCGTGCTACCTTTCAACCTCAGCTGGACCTGTGATGGGGGT TTTATATTTGTCGACTGCGAAGCTGGCGTTTTGTAGTGATAACCCGCTTTCTTACCAGACGGGTGAGGAGACTCAGTGGA GCTATTATAAGGTGGTCATTCCATTGCATCAGCTGAGAGCGGTGAACCCTTCAATAAGCAGAACCAACCCATCAGAGAAG TATATACAGATTATCTCTGTTGACAACCATGAGTTTTGGTTTATGGGCTTTGTGCATTATGATAGTGCTGTTAAACATAT TCAAGAACTATTGCAGCCTCAGTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0349700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSGDQPHPQPPTTTTTATTTTPTKPHDSDSHSTEYAPYPKLDPNDVVPPPPSQPINTPSPLDARGDAATTMPTESNPYVS PSPVPTSNSSAKNTLDSVKDALGRWGKKAAEATKKAEDLAGNMWQHLKTGPSFADAAVGRIAQSTKVLAEGGYEKIFRQT FQTVPEEQLVRTYACYLSTSAGPVMGVLYLSTAKLAFCSDNPLSYQTGEETQWSYYKVVIPLHQLRAVNPSISRTNPSEK YIQIISVDNHEFWFMGFVHYDSAVKHIQELLQPQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 93 93 - –
MobiDBLite
mobidb-lite
1 26 26 - –
PANTHER
PTHR31969
21 273 253 7.4E-137
IPR037848
PANTHER
PTHR31969:SF4
21 273 253 7.4E-137 –
MobiDBLite
mobidb-lite
42 57 16 - –
MobiDBLite
mobidb-lite
69 93 25 - –
Gene3D
G3DSA:2.30.29.30
152 272 121 8.4E-9
IPR011993
SMART
SM00568
155 232 78 8.7E-18
IPR004182
Pfam
PF02893
156 272 117 2.3E-28
IPR004182
CDD
cd13222
166 272 107 2.31707E-63 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0349700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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