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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR004182
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 37 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.452s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0292899.1
n.a. GLABRA2 expression modulator [Medicago truncatula] gi|357465343|ref|XP_003602953.1| chr0 152022188 152026416 -
3 domain predictions
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Lj0g3v0321169.1
n.a. n.a. chr0 167653927 167660263 +
3 domain predictions
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Lj0g3v0321179.1
n.a. PREDICTED: GLABRA2 expression modulator-like [Glycine max] gi|356566022|ref|XP_003551234.1| chr0 167653927 167661672 -
3 domain predictions
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Lj0g3v0363269.1
n.a. GEM-like protein [Medicago truncatula] gi|357499751|ref|XP_003620164.1| chr0 191593727 191594869 +
3 domain predictions
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Lj1g3v3902860.1
n.a. GEM-like protein [Medicago truncatula] gi|357508343|ref|XP_003624460.1| chr1 45216618 45219075 -
3 domain predictions
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Lj4g3v0511330.1
n.a. PREDICTED: C2 and GRAM domain-containing protein At1g03370-like [Cicer arietinum] gi|502142930|ref|XP_004505156.1| chr4 8778804 8785730 +
3 domain predictions
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Lj4g3v1597130.1
n.a. GEM-like protein [Medicago truncatula] gi|357508343|ref|XP_003624460.1| chr4 23447160 23449617 +
3 domain predictions
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Lj4g3v3014580.1
n.a. PREDICTED: GEM-like protein 4-like [Cicer arietinum] gi|502171563|ref|XP_004515060.1| chr4 40156016 40157778 -
3 domain predictions
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Lj5g3v1737120.1
n.a. PREDICTED: myotubularin-related protein 2-like [Cicer arietinum] gi|502118244|ref|XP_004496171.1| chr5 24950374 24954708 +
2 domain predictions
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Lj5g3v2259700.1
n.a. PREDICTED: GEM-like protein 4-like [Cicer arietinum] gi|502121267|ref|XP_004497247.1| chr5 32902710 32909701 -
3 domain predictions
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Lj5g3v2259700.2
n.a. PREDICTED: GEM-like protein 4-like [Cicer arietinum] gi|502121267|ref|XP_004497247.1| chr5 32902710 32903771 -
3 domain predictions
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Lj5g3v2259700.3
n.a. PREDICTED: GEM-like protein 4-like [Cicer arietinum] gi|502121267|ref|XP_004497247.1| chr5 32908722 32909701 -
3 domain predictions
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Lj5g3v2259710.1
n.a. PREDICTED: GEM-like protein 4-like [Glycine max] gi|356536453|ref|XP_003536752.1| chr5 32912569 32914236 -
3 domain predictions
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Lj6g3v1708400.1
n.a. PREDICTED: C2 and GRAM domain-containing protein At1g03370-like [Glycine max] gi|356532855|ref|XP_003534985.1| chr6 19337388 19344625 -
3 domain predictions
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LotjaGi1g1v0196800.1
n.a. C2 and GRAM domain-containing protein; TAIR: AT5G50170.1 C2 calcium/lipid-binding and GRAM domain containing protein; Swiss-Prot: sp|Q9FGS8|C2GR2_ARATH C2 and GRAM domain-containing protein At5g50170; TrEMBL-Plants: tr|A0A0R0K9Z2|A0A0R0K9Z2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0196800 LjG1.1_chr1 39829436 39835755 +
3 domain predictions
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LotjaGi1g1v0196800.2
n.a. C2 and GRAM domain-containing protein; TAIR: AT5G50170.1 C2 calcium/lipid-binding and GRAM domain containing protein; Swiss-Prot: sp|Q9FGS8|C2GR2_ARATH C2 and GRAM domain-containing protein At5g50170; TrEMBL-Plants: tr|A0A0R0K9Z2|A0A0R0K9Z2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0196800 LjG1.1_chr1 39829436 39835755 +
3 domain predictions
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LotjaGi1g1v0349700.1
n.a. GEM-like protein 1; TAIR: AT1G28200.1 FH interacting protein 1; Swiss-Prot: sp|Q9SE96|GEML1_ARATH GEM-like protein 1; TrEMBL-Plants: tr|A0A0L9UGE2|A0A0L9UGE2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0349700 LjG1.1_chr1 81958250 81963354 -
3 domain predictions
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LotjaGi1g1v0631000.1
n.a. GRAM domain protein/ABA-responsive-like protein; TAIR: AT5G13200.1 GRAM domain family protein; Swiss-Prot: sp|Q9LYV6|GEML5_ARATH GEM-like protein 5; TrEMBL-Plants: tr|I3TA12|I3TA12_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0631000 LjG1.1_chr1 118455156 118460039 -
3 domain predictions
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LotjaGi2g1v0157200.1
n.a. Myotubularin; TAIR: AT3G10550.1 Myotubularin-like phosphatases II superfamily; Swiss-Prot: sp|F4J3T8|MYTM1_ARATH Phosphatidylinositol-3-phosphatase myotubularin-1; TrEMBL-Plants: tr|V7BH90|V7BH90_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0157200 LjG1.1_chr2 55643415 55657924 -
2 domain predictions
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LotjaGi2g1v0178700.1
n.a. GRAM domain protein/ABA-responsive-like protein; TAIR: AT5G23370.1 GRAM domain-containing protein / ABA-responsive protein-like protein; Swiss-Prot: sp|Q9FMW4|GEML8_ARATH Putative GEM-like protein 8; TrEMBL-Plants: tr|G7KKC8|G7KKC8_MEDTR GRAM domain protein/ABA-responsive-like protein; Found in the gene: LotjaGi2g1v0178700 LjG1.1_chr2 60020592 60023374 -
3 domain predictions
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LotjaGi3g1v0067300.1
n.a. GRAM domain family protein; TAIR: AT1G02120.1 GRAM domain family protein; Swiss-Prot: sp|F4HVW5|VAD1_ARATH Protein VASCULAR ASSOCIATED DEATH 1, chloroplastic; TrEMBL-Plants: tr|A0A072TWG7|A0A072TWG7_MEDTR PH-GRAM1-TCB1D9-TCB1D9B domain protein; Found in the gene: LotjaGi3g1v0067300 LjG1.1_chr3 7288362 7302896 +
3 domain predictions
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LotjaGi3g1v0067300.2
n.a. GRAM domain family protein; TAIR: AT1G02120.1 GRAM domain family protein; Swiss-Prot: sp|F4HVW5|VAD1_ARATH Protein VASCULAR ASSOCIATED DEATH 1, chloroplastic; TrEMBL-Plants: tr|A0A072TJX9|A0A072TJX9_MEDTR PH-GRAM1-TCB1D9-TCB1D9B domain protein; Found in the gene: LotjaGi3g1v0067300 LjG1.1_chr3 7288362 7302896 +
3 domain predictions
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LotjaGi3g1v0067300.3
n.a. GRAM domain family protein; TAIR: AT1G02120.1 GRAM domain family protein; Swiss-Prot: sp|F4HVW5|VAD1_ARATH Protein VASCULAR ASSOCIATED DEATH 1, chloroplastic; TrEMBL-Plants: tr|A0A072TJX9|A0A072TJX9_MEDTR PH-GRAM1-TCB1D9-TCB1D9B domain protein; Found in the gene: LotjaGi3g1v0067300 LjG1.1_chr3 7288374 7302557 +
3 domain predictions
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LotjaGi3g1v0067300.4
n.a. GRAM domain family protein; TAIR: AT1G02120.1 GRAM domain family protein; Swiss-Prot: sp|F4HVW5|VAD1_ARATH Protein VASCULAR ASSOCIATED DEATH 1, chloroplastic; TrEMBL-Plants: tr|A0A072TWG7|A0A072TWG7_MEDTR PH-GRAM1-TCB1D9-TCB1D9B domain protein; Found in the gene: LotjaGi3g1v0067300 LjG1.1_chr3 7288375 7302383 +
3 domain predictions
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LotjaGi4g1v0005000.1
n.a. C2 and GRAM domain-containing protein; TAIR: AT1G03370.1 C2 calcium/lipid-binding and GRAM domain containing protein; Swiss-Prot: sp|Q9ZVT9|C2GR1_ARATH C2 and GRAM domain-containing protein At1g03370; TrEMBL-Plants: tr|I1KNM4|I1KNM4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0005000 LjG1.1_chr4 829474 836291 -
3 domain predictions
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LotjaGi4g1v0005000.2
n.a. C2 and GRAM domain-containing protein; TAIR: AT1G03370.1 C2 calcium/lipid-binding and GRAM domain containing protein; Swiss-Prot: sp|Q9ZVT9|C2GR1_ARATH C2 and GRAM domain-containing protein At1g03370; TrEMBL-Plants: tr|I1KNM4|I1KNM4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0005000 LjG1.1_chr4 829550 842552 -
3 domain predictions
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LotjaGi4g1v0068800.1
n.a. C2 domain-containing protein / GRAM domain-containing protein; TAIR: AT3G59660.1 C2 domain-containing protein / GRAM domain-containing protein; Swiss-Prot: sp|Q8W4D4|BAGP1_ARATH BAG-associated GRAM protein 1; TrEMBL-Plants: tr|K7K882|K7K882_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0068800 LjG1.1_chr4 8690588 8699044 +
3 domain predictions
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LotjaGi4g1v0068800.2
n.a. C2 domain-containing protein / GRAM domain-containing protein; TAIR: AT3G59660.1 C2 domain-containing protein / GRAM domain-containing protein; Swiss-Prot: sp|Q8W4D4|BAGP1_ARATH BAG-associated GRAM protein 1; TrEMBL-Plants: tr|K7K881|K7K881_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0068800 LjG1.1_chr4 8691301 8698341 +
3 domain predictions
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LotjaGi4g1v0068800.3
n.a. C2 domain-containing protein / GRAM domain-containing protein; TAIR: AT3G59660.1 C2 domain-containing protein / GRAM domain-containing protein; Swiss-Prot: sp|Q8W4D4|BAGP1_ARATH BAG-associated GRAM protein 1; TrEMBL-Plants: tr|K7K882|K7K882_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0068800 LjG1.1_chr4 8691301 8698341 +
3 domain predictions
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LotjaGi4g1v0159300.1
n.a. GRAM domain protein/ABA-responsive-like protein; TAIR: AT2G22475.1 GRAM domain family protein; Swiss-Prot: sp|Q8S8F8|GEM_ARATH GLABRA2 expression modulator; TrEMBL-Plants: tr|A0A0B2QS05|A0A0B2QS05_GLYSO GLABRA2 expression modulator; Found in the gene: LotjaGi4g1v0159300 LjG1.1_chr4 28160803 28168705 +
3 domain predictions
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LotjaGi4g1v0438500.1
n.a. GRAM domain protein/ABA-responsive-like protein; TAIR: AT5G08350.1 GRAM domain-containing protein / ABA-responsive protein-like protein; Swiss-Prot: sp|Q9FTA0|GEML4_ARATH GEM-like protein 4; TrEMBL-Plants: tr|I3SIE9|I3SIE9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0438500 LjG1.1_chr4 81166664 81168925 -
3 domain predictions
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LotjaGi5g1v0353600.1
n.a. GRAM domain protein/ABA-responsive-like protein; TAIR: AT5G08350.1 GRAM domain-containing protein / ABA-responsive protein-like protein; Swiss-Prot: sp|Q9FTA0|GEML4_ARATH GEM-like protein 4; TrEMBL-Plants: tr|B7FJD2|B7FJD2_MEDTR GRAM domain protein/ABA-responsive-like protein; Found in the gene: LotjaGi5g1v0353600 LjG1.1_chr5 66921034 66928263 -
3 domain predictions
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LotjaGi5g1v0353600.2
n.a. GRAM domain protein/ABA-responsive-like protein; TAIR: AT5G08350.1 GRAM domain-containing protein / ABA-responsive protein-like protein; Swiss-Prot: sp|Q9FTA0|GEML4_ARATH GEM-like protein 4; TrEMBL-Plants: tr|B7FJD2|B7FJD2_MEDTR GRAM domain protein/ABA-responsive-like protein; Found in the gene: LotjaGi5g1v0353600 LjG1.1_chr5 66921036 66922441 -
3 domain predictions
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LotjaGi5g1v0353700.1
n.a. GRAM domain protein/ABA-responsive-like protein; TAIR: AT5G23370.1 GRAM domain-containing protein / ABA-responsive protein-like protein; Swiss-Prot: sp|Q9FMW4|GEML8_ARATH Putative GEM-like protein 8; TrEMBL-Plants: tr|A0A072W2G8|A0A072W2G8_MEDTR GRAM domain protein/ABA-responsive-like protein; Found in the gene: LotjaGi5g1v0353700 LjG1.1_chr5 66930869 66933091 -
3 domain predictions
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LotjaGi5g1v0353700.2
n.a. GRAM domain protein/ABA-responsive-like protein; TAIR: AT5G08350.1 GRAM domain-containing protein / ABA-responsive protein-like protein; Swiss-Prot: sp|Q9FTA0|GEML4_ARATH GEM-like protein 4; TrEMBL-Plants: tr|K7LM06|K7LM06_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0353700 LjG1.1_chr5 66930869 66936761 -
3 domain predictions
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LotjaGi5g1v0353700.3
n.a. GRAM domain protein/ABA-responsive-like protein; TAIR: AT5G08350.1 GRAM domain-containing protein / ABA-responsive protein-like protein; Swiss-Prot: sp|Q9FTA0|GEML4_ARATH GEM-like protein 4; TrEMBL-Plants: tr|K7LM06|K7LM06_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0353700 LjG1.1_chr5 66934781 66936761 -
3 domain predictions
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LotjaGi6g1v0281500.1
n.a. C2 and GRAM domain-containing protein; TAIR: AT1G03370.1 C2 calcium/lipid-binding and GRAM domain containing protein; Swiss-Prot: sp|Q9ZVT9|C2GR1_ARATH C2 and GRAM domain-containing protein At1g03370; TrEMBL-Plants: tr|A0A0B2S6D4|A0A0B2S6D4_GLYSO C2 and GRAM domain-containing protein; Found in the gene: LotjaGi6g1v0281500 LjG1.1_chr6 59787365 59794887 -
3 domain predictions
 –