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LotjaGi1g1v0350000.4

Overview

Field Value
Gene ID LotjaGi1g1v0350000
Transcript ID LotjaGi1g1v0350000.4
Related isoforms 6
Lotus japonicus genome version Gifu v1.2
Description N-(5-phosphoribosyl)anthranilate isomerase; TAIR: AT1G07780.1 phosphoribosylanthranilate isomerase 1; Swiss-Prot: sp|Q42440|PAI1_ARATH N-(5'-phosphoribosyl)anthranilate isomerase 1, chloroplastic; TrEMBL-Plants: tr|G7JBT1|G7JBT1_MEDTR N-(5-phosphoribosyl)anthranilate isomerase; Found in the gene: LotjaGi1g1v0350000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:82000455..82001656) extracted from Lotus japonicus Gifu genome v1.2.

TGCCTTTCTTCTGTATGTGTTTCAAGTTATTTGAAAACCAAACTAGCCCTTATTCCTCATGCAGACTTACTTTCATGTCT TTGCTTGCATTGAATATGCAAGTGGACTGGGTCTGGGTTATAATTCATAGATGAGACACTAATAAAATGTTTGAACTTGT AATTTCTGTAGGTTTGAGAGGACAGAAGTTTCAATTTTCTAGCGTGAGGTTCTGTCTAAAGTATAAAGTTTCCTGCAAAC TTGCTGAGTTGGGAAGTGATTCATGCTTGTCAAAGGAACTTGAAAAGAGTAAACCTCTGGTTAAGATGTGCGGCATTACA TCAGCTAAAGATGCTGCTATGGCGGCCGAAGCTGGTGCAAACTTTATTGGAATGATTATGTGGCCGAATTCAAAACGTTC GGTTTCATTTTCTGTTGCCAAGGAGATATCAAAAGTTGCAAGAGATTATGGAGCAGAGCCTGTGGGAGTATTTGTGGATG ATGATGCAGAAACAATATTAAGAGTTTCTGATGCCTCAAACCTTGAATATGTGCAGGTATATTTTTGCCTTGCCTTGATG TATTTTCTGTGACAGTTAAATGGTTGATCTCGTAATGTTTGGACAATGCAGCTTCATGGATCTGGTTCTCGGATAGCTTT CCCATCTTTAATTCAGGAAAATCGGGTAATATATGTTCTCCATGCAAATGAGGATGGGAGCCTTTTAAACATAATTTCTG ATGAAGAGTGCTCTCTAGTTGATTGGGTTCTTGTAGATAGTGCCAAGGGTGGCAGGTTTTTATAACTTAACCCATCTGCA TGTTAGATAATGAGGTTGTTTGAATGCGGACTAAAGAACACTTGTTGAAGCTTATCTACTAAAAAAAACACTAGATAAGC TCCAAAAAGTGCTCTCTGGTCCGCATCCAAACAGACTCAATCCTTTTTTTTCTTCATCGTAATATCTTGGAACTCATTAG AGTAATGTCTTTGCAGTGGCAAAGCGTTCGATTGGACGCAGTTTAAACTACCAAAAATTAGAAGTAAGCAAGGTTGGCTC TTAGCAGGAGGGATAAATCCTGAGAATGTTTCTGAGGCTATATCTACCCTCAAACCTGAAGGGGTGGATGTAAGTACTGG CATTTGTGCATCAGATGGCATCCAAAAGGATCAATCAAGAATAGCTTCCTTCATGAACGCAGTGCATTCTGTTCAGTATT GA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0350000.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTGCGGCATTACATCAGCTAAAGATGCTGCTATGGCGGCCGAAGCTGGTGCAAACTTTATTGGAATGATTATGTGGCC GAATTCAAAACGTTCGGTTTCATTTTCTGTTGCCAAGGAGATATCAAAAGTTGCAAGAGATTATGGAGCAGAGCCTGTGG GAGTATTTGTGGATGATGATGCAGAAACAATATTAAGAGTTTCTGATGCCTCAAACCTTGAATATGTGCAGCTTCATGGA TCTGGTTCTCGGATAGCTTTCCCATCTTTAATTCAGGAAAATCGGGTAATATATGTTCTCCATGCAAATGAGGATGGGAG CCTTTTAAACATAATTTCTGATGAAGAGTGCTCTCTAGTTGATTGGGTTCTTGTAGATAGTGCCAAGGGTGGCAGTGGCA AAGCGTTCGATTGGACGCAGTTTAAACTACCAAAAATTAGAAGTAAGCAAGGTTGGCTCTTAGCAGGAGGGATAAATCCT GAGAATGTTTCTGAGGCTATATCTACCCTCAAACCTGAAGGGGTGGATGTAAGTACTGGCATTTGTGCATCAGATGGCAT CCAAAAGGATCAATCAAGAATAGCTTCCTTCATGAACGCAGTGCATTCTGTTCAGTATTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0350000.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MCGITSAKDAAMAAEAGANFIGMIMWPNSKRSVSFSVAKEISKVARDYGAEPVGVFVDDDAETILRVSDASNLEYVQLHG SGSRIAFPSLIQENRVIYVLHANEDGSLLNIISDEECSLVDWVLVDSAKGGSGKAFDWTQFKLPKIRSKQGWLLAGGINP ENVSEAISTLKPEGVDVSTGICASDGIQKDQSRIASFMNAVHSVQY
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR42894:SF1
1 206 206 5.0E-108 –
PANTHER
PTHR42894
1 206 206 5.0E-108 –
SUPERFAMILY
SSF51366
1 203 203 7.06E-49
IPR011060
Gene3D
G3DSA:3.20.20.70
1 206 206 3.4E-54
IPR013785
CDD
cd00405
2 201 200 9.25387E-61
IPR001240
Pfam
PF00697
2 199 198 4.3E-42
IPR001240
Hamap
MF_00135
2 204 203 28.783
IPR001240

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0004640
Molecular function Phosphoribosylanthranilate isomerase activity Catalysis of the reaction: N-(5-phospho-beta-D-ribosyl)anthranilate = 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate.
Subterm of
GO:0006568
Biological process Tryptophan metabolic process The chemical reactions and pathways involving tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0350000.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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