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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0350400 |
| Transcript ID | LotjaGi1g1v0350400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Processing peptidase; TAIR: AT1G06870.1 Peptidase S24/S26A/S26B/S26C family protein; Swiss-Prot: sp|Q9M9Z2|TPP2_ARATH Probable thylakoidal processing peptidase 2, chloroplastic; TrEMBL-Plants: tr|A0A151TBY9|A0A151TBY9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0350400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:82057096..82060430) extracted from Lotus japonicus Gifu genome v1.2.
GCAAAGTAGTAGCCGCCGTCTATTAATCAAAACCCAACCCAGTTGGCCCAGTCCAGTCAGTGCTACGCTCGCTACACATT GACTCTGATTTCATTCATTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAACAAAACCACCACCGTCGCCACCG TTGTTCTCCGCTCTCTTCTTCCCTCCGGGGAATCGTAACGCCGGCGATTCCTCCCCTGATTCAATCTCCACCGTTCAATT CAACCCTTCTGCTTCCCCTTAACTGATTCCATCGAAAATGGCTTTCATCGCTTGCTAGGGTTTCCCCAATCCCAAACCTC CATCTCCAAAACCACCCTGTACCTTTTCCTCATCTGCTTACTCATCGCAGTTATGGCTATCCGAGCAACCTTCTCCTTCT CCGGCTACGTCGCGCAGAATCTCGTCTCCTCTGCCGGCGTCCGTGTCGCCAACTCCCGTTGCGTCCAAGAATGCTGGATC CTCTCCCGCTTCTTTGGAACCAACCAGAAGCCCGATCGAGACCCATCGGGAACCGTTCGAAGCTTCTTCTCCGATCGTGA AAGGCCTAAATCGAATAGCTGGGTCAAAAACTCTGCCTATTCTACCCTCGCCGGTGAGATTCTCGGCGATAATTTTAGTA ACCCGATTGTTTTAGGCTTGATCTCGGTGATGAAGTCTACGGCGGGTGTCTCCGCCGCGTCCTCCGCCGCAACCATGGGC GGCGTTTTTGGAATCTCCCCCATTAAGACCTCTTCGATCATACCCTTCTTGCAGGGTTCGAAGTGGCTTCCTTGCAACGA GTCCGTTCCTGACCCCACCTGGGAGGTTGATAAAGGTGGAACACCCTGTGTCGTGGAAGCTGCTTCTGCTGCTACTGCTA CTGCTACTGCTACTGCTACTGTTACTGTAGCAGTGAGTGCGAACTCGAGGGAATTGGAAAGGACTAGCTGGATCACGAGG ATGTTGAATGTTTGTTCTGAGGATACGAAAGCTGCATTCACTGCTATCACTGTTAGCTTGCTCTTCAAATCCTTCTTGGC TGAACCCAGGTCCATTCCCTCTGCTTCTATGTACCCAACTCTTGAAGTGGGTGATCGTATTCTAGCTGAGAAGGTTGGTT GATTCTTATTTAACATGCTCAATCATTTGTGTTATGTCATGGGTTTTAGCTATCTTTGTTTGAATTGAACTGATTAAGGT TGTTGTTTGTTATTGCTGTAACAGGTTTCTTTCTTCTTTAGAAAGCCTGATGTGTCAGATATAGTGATTTTTACAGCACC TCCTATATTGGTGGTATGTTTAACTTTCTCAGCAGTCAATTATTGCAACCCTTTTGTGGCATTTAATATGAAGGTGTTAA TGGATTTTGATGTTCCTTGTTTTATTAGGAGAAGCTTGATTTTAGTCCATCTGATGTGTTTATAAAGAGGATCGTGGCGA AGGCTGGGGACATTGTTGAAGTAAGCTTTTACATTTTGCATAATTAATTGATCACCTTTTAAGTATTGTGCCTGACATCT TATACTTGTTTCGGGTTTTTGTGGTAGGTTCGTGATGGGAAATTACTGGTGAATGGTGTTGCTGAAGAGGAGGATTACGT TTTAGAGCCGCTTAATTATGAGCTGGATCGAATGGTAATGCATAGAATATGCCATTGTAATGGTGCTTTATTAATTGACC GTGGGACTTGACGGCATGTTTAATTGTAGTTCCTTATTTTGTTGTTTGCAGGTTGTGCCAAAAGGACATGTTTATGTGCT GGGAGACAATCGTAATAGGAGTTTTGATTCTCATAACTGGTAATTTTCCATTCCATATCCTACTGACTTTTCTCTGTTCA TGTTAGAGAATATGTTTCTTTAGACGGACGACACAATTTGACCCATTTGTGGATGCTGTTCTTCTCAAATATCTAGCTTA TGTAAACAAATATGCTATCGGATCTCATAAGTTCATAGTTATTTATATATGCACATTTAATAATGATGTTGAACTTAACA TATTGGCTGTTTTTGTGTCTATCAGGGGTCCACTCCCTGTGGAGAACATTCTTGGTAGATCCATGTTTCGCTACTGGCCT CCATCCAGAGTATCTGACACTGACACCCTTCATAGCCACCCACCTGGAAACAGTTCTGTGGTGGTTTCTTGACATGATCT CTACTGCATAATTGAAGAATCCAGATACTTCCATTTGTTCTAAATGAAGCGCCTCTCGCGTTTTGTCCCGGGTGTGAGCT GTTATTCAACGATACTCCAGTATGAGCCTGCTTATTTTGAAGATGGTTTGGGATGAATAACTTATTCATTGATTCGAATT TGTCAATGACCATAATGAGGTTGTGCATTCTTTCGTGCTATTCTGAGATGTTTTTTTTCTCCCTGCTACAAAGTGTAGGG GAAAAGAAAAATGAAAGAAACGCGATGATTTGAAAGAAAAAAAATGATGGTAGATTTGTGCTGTATTCTTTAATGTGTTA TTTCTGGATGATAGAAACTCAGGGAAAGGTTTGAGATGGAGCTATTTGACTCCTTTCTGAGTTTCATTATGTAGGCTTCA CCATCGTTTATGGTTAAATTTCAATATTCAGTCATGCTTGAAATTGTCTGGGCACATTATTGTTGCCCATTTTCAATTCA AACCAGATGCAATATCAGAATAGCATACTTTCAGATCGACCTTGAATATTTGTTGGTTTGAATGAAGTAACCCAACTTGA TCCCTTCAACACTGAATAGGGTTTTAGACTCTGTTATAGTCATGCGCTACATCAGGGTGATTTAGTGTCCGGTCACTCCG GTGGACATTTAGCCTTGCAACTATTGGCCCTGTAATAGTGAAATTGGTCCCTCATTCTCAATCAGCAAGTGTTTATGCGA GCTATAAAGACTGGAATTGCTTCTTCAAGTGACCTTGTGCAAGTGTTGGCAGCAAGTGTGGGGAATCAGTGCCCGAAACA TGCTTCACATCTATGTGAGCAGTAAGCACTATGTGGAGTACTGTTAGCACTTAGCACTAAGCAGCCATAACTTCTGCTTA AACTGATTTGTAAAATTAAAAAAAATGATGTATTTGAAAAAAGATTATTTTTTAGATATTGTTATGAAAAATACTAGTGT TTTTTACCCGCGCGTTGCACGGGGAATTTGTCTATTGTATTTGATAAATCGATCGATATTTTAAATTATAAAAAATTTAA GATACTAAGAAAGTAAGAATAATCATAATAAAGATGTAGATACTTAAATAGCATAAATTCAGACACTAAATTCTAGTGTT TTGTAAAGTTTTGCATATATGAGGTATAACTGAATTTTGTTTGCGAAGATGTATA
CDS sequence (LotjaGi1g1v0350400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTATCCGAGCAACCTTCTCCTTCTCCGGCTACGTCGCGCAGAATCTCGTCTCCTCTGCCGGCGTCCGTGTCGCCAA CTCCCGTTGCGTCCAAGAATGCTGGATCCTCTCCCGCTTCTTTGGAACCAACCAGAAGCCCGATCGAGACCCATCGGGAA CCGTTCGAAGCTTCTTCTCCGATCGTGAAAGGCCTAAATCGAATAGCTGGGTCAAAAACTCTGCCTATTCTACCCTCGCC GGTGAGATTCTCGGCGATAATTTTAGTAACCCGATTGTTTTAGGCTTGATCTCGGTGATGAAGTCTACGGCGGGTGTCTC CGCCGCGTCCTCCGCCGCAACCATGGGCGGCGTTTTTGGAATCTCCCCCATTAAGACCTCTTCGATCATACCCTTCTTGC AGGGTTCGAAGTGGCTTCCTTGCAACGAGTCCGTTCCTGACCCCACCTGGGAGGTTGATAAAGGTGGAACACCCTGTGTC GTGGAAGCTGCTTCTGCTGCTACTGCTACTGCTACTGCTACTGCTACTGTTACTGTAGCAGTGAGTGCGAACTCGAGGGA ATTGGAAAGGACTAGCTGGATCACGAGGATGTTGAATGTTTGTTCTGAGGATACGAAAGCTGCATTCACTGCTATCACTG TTAGCTTGCTCTTCAAATCCTTCTTGGCTGAACCCAGGTCCATTCCCTCTGCTTCTATGTACCCAACTCTTGAAGTGGGT GATCGTATTCTAGCTGAGAAGGTTTCTTTCTTCTTTAGAAAGCCTGATGTGTCAGATATAGTGATTTTTACAGCACCTCC TATATTGGTGGAGAAGCTTGATTTTAGTCCATCTGATGTGTTTATAAAGAGGATCGTGGCGAAGGCTGGGGACATTGTTG AAGTTCGTGATGGGAAATTACTGGTGAATGGTGTTGCTGAAGAGGAGGATTACGTTTTAGAGCCGCTTAATTATGAGCTG GATCGAATGGTTGTGCCAAAAGGACATGTTTATGTGCTGGGAGACAATCGTAATAGGAGTTTTGATTCTCATAACTGGGG TCCACTCCCTGTGGAGAACATTCTTGGTAGATCCATGTTTCGCTACTGGCCTCCATCCAGAGTATCTGACACTGACACCC TTCATAGCCACCCACCTGGAAACAGTTCTGTGGTGGTTTCTTGA
Protein sequence (LotjaGi1g1v0350400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAIRATFSFSGYVAQNLVSSAGVRVANSRCVQECWILSRFFGTNQKPDRDPSGTVRSFFSDRERPKSNSWVKNSAYSTLA GEILGDNFSNPIVLGLISVMKSTAGVSAASSAATMGGVFGISPIKTSSIIPFLQGSKWLPCNESVPDPTWEVDKGGTPCV VEAASAATATATATATVTVAVSANSRELERTSWITRMLNVCSEDTKAAFTAITVSLLFKSFLAEPRSIPSASMYPTLEVG DRILAEKVSFFFRKPDVSDIVIFTAPPILVEKLDFSPSDVFIKRIVAKAGDIVEVRDGKLLVNGVAEEEDYVLEPLNYEL DRMVVPKGHVYVLGDNRNRSFDSHNWGPLPVENILGRSMFRYWPPSRVSDTDTLHSHPPGNSSVVVS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 384 | 384 | 8.8E-150 | – | |
| PANTHER | 1 | 384 | 384 | 8.8E-150 | – | |
| TIGRFAM | 207 | 364 | 158 | 6.3E-37 | ||
| SUPERFAMILY | 220 | 368 | 149 | 1.15E-47 | ||
| PRINTS | 221 | 237 | 17 | 3.2E-18 | ||
| CDD | 224 | 357 | 134 | 1.04213E-22 | – | |
| ProSitePatterns | 230 | 237 | 8 | - | ||
| Gene3D | 230 | 362 | 133 | 1.4E-30 | – | |
| Pfam | 255 | 357 | 103 | 2.5E-12 | ||
| PRINTS | 281 | 293 | 13 | 3.2E-18 | ||
| PRINTS | 325 | 344 | 20 | 3.2E-18 | ||
| ProSitePatterns | 330 | 343 | 14 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
| Molecular function | Serine-type peptidase activity | Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi1g1v0350400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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