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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0355900 |
| Transcript ID | LotjaGi1g1v0355900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heat shock transcription factor; TAIR: AT1G46264.1 heat shock transcription factor B4; Swiss-Prot: sp|Q9C635|HSFB4_ARATH Heat stress transcription factor B-4; TrEMBL-Plants: tr|G7J6F2|G7J6F2_MEDTR Heat shock transcription factor; Found in the gene: LotjaGi1g1v0355900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:82773625..82775575) extracted from Lotus japonicus Gifu genome v1.2.
GAAGAAACAAAAATAACTGGTATAACAAAATAAAGAAGATGGCAGAGAAAGCATTGTACAGTAACAACTAATAGTACTAT TCATTCTACTCCTCTCATATCTCTCTCCTCCCCAACAAACATTTTTATCCCGCACCATTCTCCTCTCACTCTCACTCACT TCCTTTCCACTCAGTCACAAACACTCTCTCTTCTCTCTTCTCTTCTCTGTCTTATCTGTGAGCTCATTCAACCTCTTCCT CTTCCTCTTCCTCTTCCATCCCAGCACCACCATCAATGGCTCTTCTCCTAGACAACTGCGAAGGCATTCTCCTCTCCCTA GACTCCCACAAATCAGTCCCCGCTCCCTTCCTCACCAAAACCTACCAGCTCGTCGACGACCCCGCCACCGATCACATCGT CTCCTGGGGCGAAGACGACACCACCTTCATCGTCTGGCGGCCACCGGAGTTCGCCAGAGACCTCCTCCCTAACTACTTCA AGCACAACAACTTCTCCAGCTTTGTCCGCCAACTCAACACATATGTATAAATATATATCATATCTTCAATTTTCACTCAT CAAATCAAATAAAATTCTCATCTAACTTTTCCATTTGCTTCATAATGCTCAGGGTTTCAGGAAAATCGTTCCAGATAGAT GGGAGTTTGCTAACGAGTTCTTCAAGAAAGGAGAGAAGCATTTACTCTGCGAGATCCACCGCAGAAAAACCGCTCAACCC AACCAAACCGGCATCAACCACCACCACCACGGTGGTTTCTTCCCGTTTTCAAGTAGAGCAAGCATCTCTCCAGATTCTGA GGATTTACAACAGCAAACCAACTGGTGCGACTCTCCGCCGCCGCTCATCACTTCTTCTTCCCCCAAAGGCGTCTCCGCCG CCACGGCAGCGGCGGCGATGATGATGAACAGCGGAGCCAGCTACGGCACTTCTGTCACTGCGCTTTCTGAAGATAATGAA AGACTCAGGCGAAGCAACAACATGCTCATGTCCGAGCTCGCTCACATGAAGAAGCTTTACAATGATATCATCTACTTCGT TCAGAATCATGTGAAGCCGGTGGCACCAAGTAACTCTTATTCTTCTTCTTCTATGCTTCTCTGCAACACAGTAGCATCAT CAACCCCTATTCCTAGCAATGTTCCATTGATGCAGAGGCCAATGAATCAGGTTATGGGGTATTATTCTACTAACCCTAAG CAAGTTTCTCATAATCACCACCACCACCATCAACCTCAAAATCAAACCAATGTTGTTGTGAACTCTCCAACCAACACATC AAGAAGCTCCATAACCGTTTCTGGAGAGGCTAATAATAACAACAGTAGCAACAACACCTGCAAGACTAAGCTTTTTGGGG TCTCTTTACAGTCCAAGAAAAGAGTGCACCCTGATTCAGACACCAACAAGCTAGCTCGCTTGGTTTTGGAAAAAGATGAT CTAGGCTTAAATCTCATGCCTCGTTCCACTTGTTAGCGCGTGTTTGTTCGAATACCAGTTGAGTTAACATGATAACACAT GAGTTTCGTTCACTTTTTAGTGACGGTTAGCACTTGCGCCAACCAGTATCAAAACATATGTCATTAGTATCTTGAAATCT TGAAATCCAAAGCTAGAAGTAGCTAGTTTCTTTTTACATGTTTTTTTTTTTGAATTCTTGAATCCTTCAAGTTTTGATGA GTCTGGGAGAGGAGGCAAATGGTATTGATGGGAACATGTTAGTGTGCGTGCGTGTGACTGTTTTTCTGTTTGTGATTCTG TGTACATATAACTTAGTGCCCATATTATCTTTGTTGTTCCAAACTCATCATCACTATTGATGTAGGTGATGGGTTTTGGT AAGATTAAAAAACAAATTATTTATGCCAACTTTAAATGCTCATGAACTTCTTCTCTTTGTGCTCAAGTTTCCTCTCATTT TCATTGGTGCAATTTATTGTGTGGGATCACT
CDS sequence (LotjaGi1g1v0355900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCTTCTCCTAGACAACTGCGAAGGCATTCTCCTCTCCCTAGACTCCCACAAATCAGTCCCCGCTCCCTTCCTCAC CAAAACCTACCAGCTCGTCGACGACCCCGCCACCGATCACATCGTCTCCTGGGGCGAAGACGACACCACCTTCATCGTCT GGCGGCCACCGGAGTTCGCCAGAGACCTCCTCCCTAACTACTTCAAGCACAACAACTTCTCCAGCTTTGTCCGCCAACTC AACACATATGGTTTCAGGAAAATCGTTCCAGATAGATGGGAGTTTGCTAACGAGTTCTTCAAGAAAGGAGAGAAGCATTT ACTCTGCGAGATCCACCGCAGAAAAACCGCTCAACCCAACCAAACCGGCATCAACCACCACCACCACGGTGGTTTCTTCC CGTTTTCAAGTAGAGCAAGCATCTCTCCAGATTCTGAGGATTTACAACAGCAAACCAACTGGTGCGACTCTCCGCCGCCG CTCATCACTTCTTCTTCCCCCAAAGGCGTCTCCGCCGCCACGGCAGCGGCGGCGATGATGATGAACAGCGGAGCCAGCTA CGGCACTTCTGTCACTGCGCTTTCTGAAGATAATGAAAGACTCAGGCGAAGCAACAACATGCTCATGTCCGAGCTCGCTC ACATGAAGAAGCTTTACAATGATATCATCTACTTCGTTCAGAATCATGTGAAGCCGGTGGCACCAAGTAACTCTTATTCT TCTTCTTCTATGCTTCTCTGCAACACAGTAGCATCATCAACCCCTATTCCTAGCAATGTTCCATTGATGCAGAGGCCAAT GAATCAGGTTATGGGGTATTATTCTACTAACCCTAAGCAAGTTTCTCATAATCACCACCACCACCATCAACCTCAAAATC AAACCAATGTTGTTGTGAACTCTCCAACCAACACATCAAGAAGCTCCATAACCGTTTCTGGAGAGGCTAATAATAACAAC AGTAGCAACAACACCTGCAAGACTAAGCTTTTTGGGGTCTCTTTACAGTCCAAGAAAAGAGTGCACCCTGATTCAGACAC CAACAAGCTAGCTCGCTTGGTTTTGGAAAAAGATGATCTAGGCTTAAATCTCATGCCTCGTTCCACTTGTTAG
Protein sequence (LotjaGi1g1v0355900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALLLDNCEGILLSLDSHKSVPAPFLTKTYQLVDDPATDHIVSWGEDDTTFIVWRPPEFARDLLPNYFKHNNFSSFVRQL NTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAQPNQTGINHHHHGGFFPFSSRASISPDSEDLQQQTNWCDSPPP LITSSSPKGVSAATAAAAMMMNSGASYGTSVTALSEDNERLRRSNNMLMSELAHMKKLYNDIIYFVQNHVKPVAPSNSYS SSSMLLCNTVASSTPIPSNVPLMQRPMNQVMGYYSTNPKQVSHNHHHHHQPQNQTNVVVNSPTNTSRSSITVSGEANNNN SSNNTCKTKLFGVSLQSKKRVHPDSDTNKLARLVLEKDDLGLNLMPRSTC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 351 | 350 | 2.0E-156 | ||
| PANTHER | 2 | 351 | 350 | 2.0E-156 | – | |
| Gene3D | 16 | 116 | 101 | 4.1E-38 | ||
| SMART | 21 | 114 | 94 | 1.5E-60 | ||
| SUPERFAMILY | 22 | 114 | 93 | 2.38E-34 | ||
| PRINTS | 25 | 48 | 24 | 7.8E-20 | ||
| Pfam | 25 | 114 | 90 | 7.6E-30 | ||
| PRINTS | 63 | 75 | 13 | 7.8E-20 | ||
| ProSitePatterns | 64 | 88 | 25 | - | ||
| PRINTS | 76 | 88 | 13 | 7.8E-20 | ||
| Coils | 191 | 211 | 21 | - | – | |
| MobiDBLite | 276 | 323 | 48 | - | – | |
| MobiDBLite | 291 | 323 | 33 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi1g1v0355900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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