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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0358300 |
| Transcript ID | LotjaGi1g1v0358300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MYB-related transcription factor; TAIR: AT5G67300.1 myb domain protein r1; Swiss-Prot: sp|Q9FDW1|MYB44_ARATH Transcription factor MYB44; TrEMBL-Plants: tr|I3RSY8|I3RSY8_LOTJA R2R3MYB transcription factor; Found in the gene: LotjaGi1g1v0358300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:83289463..83290809) extracted from Lotus japonicus Gifu genome v1.2.
GGTTCGTACGTTACTTTGTGTATTTCAGTGGGATGACCAAAACCGAACAATAAAAAAACAACCGCATTTTCAATAATGGG AATGAAAAATTTACGTGGAAGACTGAGAGACTCTCATTTGACATGTGTCAGTTTGACAGCTGTATACTACTAGTAACTGC AAATATCCCAAACAAACCACAACCGTTGTCACCGGTTCAACAAGTCATCCTTATCACTTTCGCAGTTACGTTTCGCACAG TATAAATATCTCGCTCTCTCTGTTCTTCTTCTAAGTTCTATCTCACTCAGTTTCTCACAACAAGCTCTAGTTCATCACCC TTTTTTGTTCTGAATGAGATTAAGGCATGGATAGAGTAAGAGGTCCATGGAATCCTGAAGAGGATGAAACGTTGAAGAGG TTGATTCAGACCCACGGCGCCAGAGACTGGTCCATTATCAGCAAATCGATTCCGGGTCGATCTGGAAAGTCTTGCCGGCT GCGGTGGTGCAACCAGCTGTCACCGGAGGTGGAGCGGAGGCCTTTCACGCCGGAGGAGGATGAAGCGATTATTAAAGCTC ATGCGGAATTCGGGAATAAGTGGGCAGCCATCTCGCGGCTACTAAACGGCCGCACCGACAACGCTATCAAGAATCACTGG AATTCCCCTCTTAAGAGGAAATGTTCCACCACCGAGCACTATCACTACCCGCCTCTCAAGCGATCCACCAGCGACACCCT TTCCTGGAATAAGGGTAGCCCATCCAGATCCGATTTGAGCGATTCTAGGATGCCCATGCCCATTTTGGCTCCGCCTCCGA CTCGAGCACCTACAACTGATCCGATAACATCACTCAGTTTATCCCTGCCTGGATACGACTTATGCAACGGATCCGGTCCA AATCATGGGTTCAATTGCGGCCCAACCCGGGATATTCAACCTTCCCTAGGCAACTGTAAAGGTTGTGAGCGGCTCAGTGC GGAGTTATTGGTCTTTATGCAAGAGATGATTCGAATAGAAGTGAAGAATTATATGCGTGAGGTAGAGCAAAATGGTTTAC TATATTGAAGAATATGTGCTTAGGTAGGTAGAGCAAAATTGGTTTACTATATTGAAGAATATGTGCTTAGGTTGGATAGG GAGATTTAGGGAGAGATAGATGAGGAGTTGAGTATGAATTGTAGAGGTGAAGCCGTTTTTGTTTTTCTTTTGTTGCTTCA ATATCTCATTGAGAAAAATATTAATTTTTATCTGATACAAATGGACTTCAAAATTTCAGAAAGGGGTTGAATTTTCCCTA AAGATTAAAGGTCTTTCATGTCGGTCCCTCACACGATCATTTTATAAACAGCGGTATGCTATCAAAT
CDS sequence (LotjaGi1g1v0358300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATAGAGTAAGAGGTCCATGGAATCCTGAAGAGGATGAAACGTTGAAGAGGTTGATTCAGACCCACGGCGCCAGAGA CTGGTCCATTATCAGCAAATCGATTCCGGGTCGATCTGGAAAGTCTTGCCGGCTGCGGTGGTGCAACCAGCTGTCACCGG AGGTGGAGCGGAGGCCTTTCACGCCGGAGGAGGATGAAGCGATTATTAAAGCTCATGCGGAATTCGGGAATAAGTGGGCA GCCATCTCGCGGCTACTAAACGGCCGCACCGACAACGCTATCAAGAATCACTGGAATTCCCCTCTTAAGAGGAAATGTTC CACCACCGAGCACTATCACTACCCGCCTCTCAAGCGATCCACCAGCGACACCCTTTCCTGGAATAAGGGTAGCCCATCCA GATCCGATTTGAGCGATTCTAGGATGCCCATGCCCATTTTGGCTCCGCCTCCGACTCGAGCACCTACAACTGATCCGATA ACATCACTCAGTTTATCCCTGCCTGGATACGACTTATGCAACGGATCCGGTCCAAATCATGGGTTCAATTGCGGCCCAAC CCGGGATATTCAACCTTCCCTAGGCAACTGTAAAGGTTGTGAGCGGCTCAGTGCGGAGTTATTGGTCTTTATGCAAGAGA TGATTCGAATAGAAGTGAAGAATTATATGCGTGAGGTAGAGCAAAATGGTTTACTATATTGA
Protein sequence (LotjaGi1g1v0358300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDRVRGPWNPEEDETLKRLIQTHGARDWSIISKSIPGRSGKSCRLRWCNQLSPEVERRPFTPEEDEAIIKAHAEFGNKWA AISRLLNGRTDNAIKNHWNSPLKRKCSTTEHYHYPPLKRSTSDTLSWNKGSPSRSDLSDSRMPMPILAPPPTRAPTTDPI TSLSLSLPGYDLCNGSGPNHGFNCGPTRDIQPSLGNCKGCERLSAELLVFMQEMIRIEVKNYMREVEQNGLLY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 55 | 55 | 27.114 | ||
| PANTHER | 1 | 176 | 176 | 6.8E-88 | – | |
| PANTHER | 1 | 176 | 176 | 6.8E-88 | ||
| SUPERFAMILY | 2 | 98 | 97 | 3.71E-31 | ||
| SMART | 4 | 53 | 50 | 8.3E-16 | ||
| Gene3D | 4 | 57 | 54 | 9.0E-22 | – | |
| CDD | 7 | 49 | 43 | 3.2619E-15 | ||
| Pfam | 8 | 66 | 59 | 2.5E-16 | – | |
| SMART | 56 | 104 | 49 | 6.8E-15 | ||
| ProSiteProfiles | 57 | 106 | 50 | 21.191 | ||
| CDD | 59 | 99 | 41 | 6.11097E-13 | ||
| Gene3D | 59 | 116 | 58 | 5.4E-20 | – | |
| MobiDBLite | 113 | 158 | 46 | - | – | |
| MobiDBLite | 119 | 138 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0358300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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