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LotjaGi1g1v0358500.1

Overview

Field Value
Gene ID LotjaGi1g1v0358500
Transcript ID LotjaGi1g1v0358500.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Mortality factor 4-like protein 1; TAIR: AT1G02740.1 MRG family protein; Swiss-Prot: sp|Q4V3E2|MRG2_ARATH Protein MRG2; TrEMBL-Plants: tr|A0A151TTR4|A0A151TTR4_CAJCA Chromatin modification-related protein eaf3; Found in the gene: LotjaGi1g1v0358500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:83326193..83330868) extracted from Lotus japonicus Gifu genome v1.2.

AAGGAAGAGACGCGTTTGTTGGACTGTGGTAAGAAATTGATTCTCAGTGAACATCAACAACATTCATGTAATCGAAGAGT GAGTGTCGGGGATCAGATTGTGAGAGTAAGAAAGAATCGAAATTTGGTGATCGGAGAGTGGAAAATGGGTACCTCCAATG CAATTTCAGAGAACTCCAATGGCAACATCATCATCAGCAGCAACATCAACAGCAGCAGCAGCACTGAGACTGCAACGGAA AATCAGACCCCCCCAGCTGCTCCCTATGCCCAAGGAGAGAAGGTCTTAGCTAACCACACTAGTTGTCTTTATGAAGCCAA GGTAAGGTTTCTCTCTCTATTCCCTCAATCACTGTGAAATTTAATGTGAAATTTATGAAATTGGATTTTTCTGTCTTGTT TTAAAGGTTATGGAGATTGAGTACAGGAACAATCAATGGTGGTTCTTTGTTCATTATCTTGTAAGCATGTCTCCATTTTA CTCCTCTTATTAATACCACGTTTACATTTGCCTCCTTTATTGCATTAGCTAGTCTCATTTTCTCAAATGTTGTTTAAACT ATTTTTTTTCTTTTAATTTTATTCTTTTCAGGGTTGGAAGAAAAGGTTAGCATTTACGTATGTGTTTGGATTTCCGTTGA GTTCAATGTGATCCGCGTTGAAGTTTACGTGGCAAAATCGTGTCTCTCTGATCCAAGTTAAATTCAACGTGGCAAATTCT AGCTTATTTGTTGATAAACTTGAAATCACGTTTTGTGTTTGCGCGAATGCCAAACCAAACATGCGCTAACTCGTCTTATA TAAGGGTTTTCATGCAGTTGGGATGAATGGGTTGGTGTGGATCGTCTGCTGAAGCACACGGCGGAAAACATGAGCACGAA ACAAGCCCTTGATGAGAAACATGGCAATGACAAGAATGCGAAAGTCCCCCGTGCATCCCAGGCGAAATCCAAGGGTTTTA ACGGTCAGATGTTTCTTCTCTGCACTTTAATCAATTGTTTGTTGTTGATCACTGGAGAATTTCTCAGCAATTTTCAATTC CCTTGATTGAATACCATGGTTGAGACATGAGATAAACTTCACATTCACTGATCTGTTTGTTAGACAGTAGAGGTAGTTTT AAATTGTGGTTGTGGCCGCGATTGCAGTTATGTTGTTGAATTGCAGACAAATGCAGGTAGATGCGGCCGCAGTTGTAGGT GCGATGCCATTGCGAAGAGTCAAAAATCCTTTTTGTTGTGGCTGCAATTACGGCTGCGGCCGCAGTTATGCTTGCGGAGC CACAGGTACCCTTAGTAGGTGACTGTGGTTGCGGTCGCAGTTATGTCGTGGAATCACGATCAAATGTGGGTTGATGCTGT TGCAGTAATAGGTGTGATGCCAATGCAGAGACTCAAATCCTTTATGTTGCGGCCGCAATTATGGTTGTGGGCCGCAGTTT AAAACCCTTAGTTGGTGACTGTGCAAGAGTCAAATTAGTAGTTGCTGCATAACATGAGAATTTGAGAATTCATTTTTTAG TATATCGTGTTCTTAACTATTGTATACAGGTTGATGTTGTCTGCCTTGCCATTAGGTGTCCAACAAATTTAAAATTGTTG TTTTATATTTTTGTAGGAATGATTTTCAAAGAGCTGATGTCTAAAATAAAATGGGGCTAATCATAAACAATGTTTATGCT TAGTTGAAGCCCCGCACACAAACAACATAGACCTGACATGTACTATGTCTCACATCTTTGCTACCTTCTTCCCTTCAATG AAAAGTTTGCTGCCGTTTAATTCGTGGGATATGTGATCTAATGTGATATTCAAAATGCACTCCTTGTTTTAATTTAGTTA TTCTTGTAGCGTATGTTTTATAATAGAAGGTCTTTCTAGCTTTTTACCACATACAAAATTACAAATATGTTTGAATCAGT TTTACTTCACCTGTGCCCTTACTATTTTTCTGAGACCTTCTTGGGAAAATGTAATGCAGTGGGAAGAGGCAGGAAAAGAA AGAATGAATCACTGGCTAAGGTACTCTCTCATTATAATCTACTGCCCATTGATTTTGTAAGTTCATGTAAATCATCAGAA TCAGTGTAAACTATTCATCAATTTAGTTCAACTATACTATTCTGATATAAGTATTTCAAACTTTTCGCTTCTATTATGTC CAACCCATGTGTGGGGGCCGGGGGGAGGGATAACTCTTCAAAACTATTTTGGGCTATATGATAATTGATTTTTTTGTTTG CTTAATCGTAGGTAAAATCAGAGGTTGATCCTGATAAAGTTTTCAACATTCAGATCCCACCAACACTAAAGAAGCAATTA GTTGATGATTGTGAGTTTATTACCAATCTGGGCAAGGTAGGGACTAGCGATATCCCTTGTAATATGTTAATTAATATTAT TTAATATCAAATCAGTGCCTCATTTCTTTACATGCTAGTTTATATGTTACATAACTGTTTTACTTGAAAGATAATTGCTT TCCATTTGAAATTTGTTAAATTTTTTTTCTTTCTCTGCAGCTTGTTAAGCTTCCTCGTACTCCTAGTGTGAGCGACATAG TTAAGAACTATTTTGATTACAAATTGAAGAAATGTGGCTCGTAAGTTCATGCTGAGACACCCTTCAGTTTTTAAACTTCA TGTTGAAACATTTTTCTGTTTTGGGGAAAGAAATTGTATTTTGAATATCATTTTAGAATAAGAGGGGTAAGAAAATTCCG ATATGCTGGCAGGTTAAGCAGTCCAGTTGGCAACTATTGAGAATAAACTATTTCTTTTATCAATGTTGTTGTTATTAAGA ATAAACTCTACCTCATAATCTTTAAAAATATTGTGCTCTTTTTTCAAAAGTATTTTATTTCTGTCAAAAATATTTTTGTC TTCCTGGGTGGTGCCATATCCAAATAGGCGTGTCTTCATGTACTTGGTTTTTTTTTTTGCTTATTTAGTACCTTGAATTC AGTACTCCTTCATCTCTTTGTTTCCCGTACAGCCTTTATGTTTCCAGTTATGGTGCTTATTGTTACTGTTTAATACTATG TTTGTGTAGGATCCCTGATTCAACTGAAGAAATTATGAAAGGACTGTGTTTTTACTTTGACAATGCACTGCCAAATATGC TCTTGTACAAGAATGAGCGTGAGCAGTACAAAGAAGCATGTCCAAATGATATCTTACCTTCTACTATATATGGTGCTGAA CATTTGCTGCGTCTCTTTGGTATGCTGATTTCTGTGCCAAACAAGCTTACTTTATAATTTAGAATAATGTATTTTGTTGT TTCGTGACAGAAAGGGCAGAGAAGCGTCTTAATAGATTTTTTTGTTAATTAGTTTGTCATGACTCTTGACTTACTTGTTA CGCCAAATAGTAATGGAAATATGAAACTCAGCAGGGCTGTTCAAAATGCTGGCCTGATGGATTTATTGCTATGTGCTCTT TGTTTTTCTAGTTTGCATTTCCTAAAGCTTTACTATTAGAACTTGTAATACTTTGTGATTCTAATTACTGGTGCATCTTT TTCTGAATTTGCAGTTAAGTTGCCGGAGTTATTGCTCAAACTTAGCATTGAAAGTCAAACATTGAAAGAACTTCAGGCAC AACTACTTGACTTTCTCAGGTATCAATGATTTCCTTGTAGTTTTATGCTATACGTAGTCATTGGTGATGAATTAAAATAG GGAAAATAGTTTTACTGGCTGTTACAAAATAAACTAAGTTCTGTAAATATCCATTTTGCGGTGCAGGTTCTTGCAAAGAA ATCAGAGCAAATTTTTCCTTTCTACTTATCATGTCCAAGAAGATACTGAGAACAGCACCAACAAACAAGGTGACGAGTAG CGTGTTTGATCCTGGGAAACCCCATAATCACTTATGGGGAGAAGTTACAAAGTGTAGCTTCTGGACTTACCGTGCTTTGG ATTGTGTGTCACCACCAATCCAAACACACTATAGGCTTGTCGACTTGGGGACAAATATTGATTTTGGCATTTTGGATTGT GCATAATACCGGGGGTTTTGCCGCTTTATAATACTTGTCCTTGTCGCAGTTTACATTATAGATTAAAATGTTGCGATTAG ATTTTTTAAAGTGTTACCCATAGTTATTTTTGTTGACATTGGATCAAGTGAAACAGTTTAATTTAGTCCATTCTCTGGAT TGCAGTGGGAGTTGAAATTTTGTGCATAATTTCTGGTTTGTTTTTTGTTGTTGTCAGAACCAGACAACAGTATTCTGGTG CAGATGCAAGAGTCCATGTTGTATGTTTTAGAAAACTCAGCTATTCTGAGTTGAAGCATGCCTCCAAAGCTTATCTGTAA ATTATAAGTCACAGCTCATGATTTTCCTCCATAGATAGCTAGCTTCGTATGTTTGATTCCTCCAATTTCCCTTGTAACTT TCCTATCTCTGACCTCTGTCACTTTAATCCTACTTATATCTCTTCCTCATTTCCCCTCCTTATCACTCCAATCTCTTTTC CTTGCCCCCCAGCTAAAGTGCTATAGTCAGTGAATTTTCTTATGATTATCCATTATCTGAAATAAAATTGCCTGACATTT TGAGGATAGCTTCTCTTCAATTCAACTTCTAGATTCCCTTGCCTCATATGCTTTTGAATCTTGATCTTCTATTCCTCATC TTTATTCACATCCAATCCTTTTGTGTTTTTCATTCA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0358500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGCACGAAACAAGCCCTTGATGAGAAACATGGCAATGACAAGAATGCGAAAGTCCCCCGTGCATCCCAGGCGAAATC CAAGGGTTTTAACGTGGGAAGAGGCAGGAAAAGAAAGAATGAATCACTGGCTAAGGTAAAATCAGAGGTTGATCCTGATA AAGTTTTCAACATTCAGATCCCACCAACACTAAAGAAGCAATTAGTTGATGATTGTGAGTTTATTACCAATCTGGGCAAG CTTGTTAAGCTTCCTCGTACTCCTAGTGTGAGCGACATAGTTAAGAACTATTTTGATTACAAATTGAAGAAATGTGGCTC GATCCCTGATTCAACTGAAGAAATTATGAAAGGACTGTGTTTTTACTTTGACAATGCACTGCCAAATATGCTCTTGTACA AGAATGAGCGTGAGCAGTACAAAGAAGCATGTCCAAATGATATCTTACCTTCTACTATATATGGTGCTGAACATTTGCTG CGTCTCTTTGTTAAGTTGCCGGAGTTATTGCTCAAACTTAGCATTGAAAGTCAAACATTGAAAGAACTTCAGGCACAACT ACTTGACTTTCTCAGGTTCTTGCAAAGAAATCAGAGCAAATTTTTCCTTTCTACTTATCATGTCCAAGAAGATACTGAGA ACAGCACCAACAAACAAGGTGACGAGTAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0358500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSTKQALDEKHGNDKNAKVPRASQAKSKGFNVGRGRKRKNESLAKVKSEVDPDKVFNIQIPPTLKKQLVDDCEFITNLGK LVKLPRTPSVSDIVKNYFDYKLKKCGSIPDSTEEIMKGLCFYFDNALPNMLLYKNEREQYKEACPNDILPSTIYGAEHLL RLFVKLPELLLKLSIESQTLKELQAQLLDFLRFLQRNQSKFFLSTYHVQEDTENSTNKQGDE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 17 17 - –
MobiDBLite
mobidb-lite
1 46 46 - –
PANTHER
PTHR10880:SF33
2 220 219 1.8E-108 –
PANTHER
PTHR10880
2 220 219 1.8E-108
IPR008676
Pfam
PF05712
37 206 170 6.9E-45
IPR026541
Gene3D
G3DSA:1.10.274.30
50 220 171 2.6E-50
IPR038217
ProSiteProfiles
PS51640
52 221 170 54.835
IPR026541

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0006325
Biological process Chromatin organization Any process that results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin.
Subterm of
Part of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0358500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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