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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0359400 |
| Transcript ID | LotjaGi1g1v0359400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Metal transporter; TAIR: AT1G47240.1 NRAMP metal ion transporter 2; Swiss-Prot: sp|Q9C6B2|NRAM2_ARATH Metal transporter Nramp2; TrEMBL-Plants: tr|V7ASV1|V7ASV1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0359400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:83412149..83414730) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGTTCTCCGTCGCCGGAAGAGGATTCAAAACAAGGAGAAGAAGAAGAGGGAAACCGCCTTCTACAAAGGGAGGAAGA AGATGAAGAAGAGGCGGCGTATGAAGCCGGAGAGAAAATCGCGGTGGTGGATTTCGACTTCGAAACGGTGGACGAATCAA CTGTGCCACCATTTTCATGGAAGAAGCTATGGATGTTCACAGGGCCAGGGTTCTTGATGAGCATAGCGTTTTTGGATCCA GGGAATCTGGAAGGGGATCTGCAAGCTGGTGCCATCGCCGGTTACTCGCTGCTATGGCTGTTGATGTGGGCTACCTTCAT GGGTCTCTTGATTCAGCTTCTTTCTCTCAGGGTCGGCGTCGCCACCGGCCGCCACCTCGCCGAGCTCTGTAGGGACCACT ATCCAAATTGGGCTCGTCTTGTGCTGTGGTTCATGGCTGAGGTTGCTTTGATTGGTGCTGATATTCAAGAGGTTATTGGT AGTGCCATTGCGATCCAAATTCTTAGCAGAGGCCTTTTCCCTCTCTGGGTTGGAGTTCTTATCACTGCTTCTGATTGGTA TGGTATCTCTTGTATTTCACCCTTCATTCAATTATTCAAATTTGATTTGTTCTTGTTTCCAATCATATAATAGTTAATCG TTTAAGTCAAAATGGTATTATGAATTGCTTAGTGGAGTGCACCATCTAGTAAAGGAGGAGCTGAGAATCATACTCATAAT TTGGAGCTATATTGTGGATTTTGTCTTGCAGGATTAATAATTAGAAATCATAGAGCCTATGCTAAGTCCATGTATGTAAG TCCTTCTATAATTGATTCTGAAGCCAAAATCAATTTTGGGGAGAAGCTTCTTTGAATAGCTTACGGGTGCCAGAATTGAT TATGAATTCAGAATCAATTGTAGTAGGGGTTCCAGGCATGCACTAAGTATTCTTTTAACGCACTATGATTTTGAACACGA GAACCACTTTGTCAACACCAGATTTATTAGGAGTACCCTTCAGTTAGTTAGATATTAACTAATTTAACTGTCACATGCCT AATTTAGTTACAGCTAGGCAGCTAGCACATGTATTCTGTTAGAGCTAGCACATATTTATATATATAGTTGTAACCACTTT TTAATTCGTTTAATTCGACCAAAGTTTTCACTCTAGATTACTCTTTCTCTCTCAATATGGTATCAGAAGATATTGCTTAC TGCACTCTCTGATTTCTCTGTTTTTTCTTCCATTGATTCAGCATGGATGAGTACTCCAATCCTTTCTTCCTTCATCCCTC TGATCATCTTGGTTCAGTCTTGTATGCTATTCTAATTTGGAAGTTGCTAACTGAAGAGAACTATGTATAAATACGCATTT ACTGGTTTCATTTCTTGATTTCAAATTTCTGACCCTTGTTTATTATTGTAGTTGATTAATTGGTTGGAACCTTCCCACTT TTCATGTCCAAACACATTTTTAACTGTGGTTTATTCTCTCTGTCAAACAGCTTTTTCTTTCTATTTCTTGAGAACTATGG AGTGAGGAAGTTGGAAGCTGCTTTTGCGGTTCTCATCGCTACCATGGCTCTTTCTTTTGCCTGGATGTTTGGTGACGCAA GACCTAGTGGGAAAGAACTTATGATGGGTAAATTTTATCTGACTGTGTAGCTGAGATATCAGTTTTTTATATGACCCAAA TTTCTGTCTTCTTAAGTAGCTTGCCTCTCCAACTGGCGTTTCAGAAATGAAAAGATATCTGTCCACTGGTGTAACCTTGC TTGTTCCTTCTGGTAGGTATTTTGATTCCAAGACTCAGCTCAAAAACAATTCGTCAGGCTGTAGGTGTTGTGGGTTGTGT CATAATGCCACACAATGTATTCCTGCATTCTGCTTTGGTGCAGTCAAGAAAGATTGACCCACAAAAGAAAGTCCGTGTAC AAGAGGCTCTCAATTACTATACAATCGAGTCCTCAGTTGCACTTACAGTCTCCTTCATGATCAATCTATTTGTCACAACA GTTTTTGCTAAGGGTTTTTATGGTACGAAGCAGGCAGATAGCATAGGATTGGTGAATGCAGGGCAGTATCTTGAGGAAAA GTATGGAGGAGGGGTCTTCCCTATTCTTTATATATGGGGAATCGGGTTATTGGCAGCTGGACAGAGTAGCACTATCACTG GAACATATGCCGGGCAATTCATTATGGGGGGTTTCCTCGACCTTCGGTTAAAGAAATGGTTGAGAGCATTGATCACTAGA AGTTGTGCAATTGTGCCAACTATAGTTGTAGCTATTGCTTTTAATAGATCGGAAGGGTCACTGGATGTTTTGAATGAGTG GCTTAATGTGCTTCAGTCCATGCAAATTCCCTTTGCACTGATTCCCCTCCTCACGTTGGTCTCCAGTGAGCAGATCATGG GCACCTTTAAGATTGGGCCTGTTCTTGAGGTGCGTTAATCATCTCAGTATTCTTTCATTCCGTCAATTGTTAATTCCAAG ATATCTGAATCAACTTCCCTCATGGTTCAAAGTTTTGTTTTTCATTTTATTAGATTATTTGACAAGGAAACAAATTTTTT TTTTTCCGTCTGTTTAGCTTAG
CDS sequence (LotjaGi1g1v0359400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTTCTCCGTCGCCGGAAGAGGATTCAAAACAAGGAGAAGAAGAAGAGGGAAACCGCCTTCTACAAAGGGAGGAAGA AGATGAAGAAGAGGCGGCGTATGAAGCCGGAGAGAAAATCGCGGTGGTGGATTTCGACTTCGAAACGGTGGACGAATCAA CTGTGCCACCATTTTCATGGAAGAAGCTATGGATGTTCACAGGGCCAGGGTTCTTGATGAGCATAGCGTTTTTGGATCCA GGGAATCTGGAAGGGGATCTGCAAGCTGGTGCCATCGCCGGTTACTCGCTGCTATGGCTGTTGATGTGGGCTACCTTCAT GGGTCTCTTGATTCAGCTTCTTTCTCTCAGGGTCGGCGTCGCCACCGGCCGCCACCTCGCCGAGCTCTGTAGGGACCACT ATCCAAATTGGGCTCGTCTTGTGCTGTGGTTCATGGCTGAGGTTGCTTTGATTGGTGCTGATATTCAAGAGGTTATTGGT AGTGCCATTGCGATCCAAATTCTTAGCAGAGGCCTTTTCCCTCTCTGGGTTGGAGTTCTTATCACTGCTTCTGATTGCTT TTTCTTTCTATTTCTTGAGAACTATGGAGTGAGGAAGTTGGAAGCTGCTTTTGCGGTTCTCATCGCTACCATGGCTCTTT CTTTTGCCTGGATGTTTGGTGACGCAAGACCTAGTGGGAAAGAACTTATGATGGGTATTTTGATTCCAAGACTCAGCTCA AAAACAATTCGTCAGGCTGTAGGTGTTGTGGGTTGTGTCATAATGCCACACAATGTATTCCTGCATTCTGCTTTGGTGCA GTCAAGAAAGATTGACCCACAAAAGAAAGTCCGTGTACAAGAGGCTCTCAATTACTATACAATCGAGTCCTCAGTTGCAC TTACAGTCTCCTTCATGATCAATCTATTTGTCACAACAGTTTTTGCTAAGGGTTTTTATGGTACGAAGCAGGCAGATAGC ATAGGATTGGTGAATGCAGGGCAGTATCTTGAGGAAAAGTATGGAGGAGGGGTCTTCCCTATTCTTTATATATGGGGAAT CGGGTTATTGGCAGCTGGACAGAGTAGCACTATCACTGGAACATATGCCGGGCAATTCATTATGGGGGGTTTCCTCGACC TTCGGTTAAAGAAATGGTTGAGAGCATTGATCACTAGAAGTTGTGCAATTGTGCCAACTATAGTTGTAGCTATTGCTTTT AATAGATCGGAAGGGTCACTGGATGTTTTGAATGAGTGGCTTAATGTGCTTCAGTCCATGCAAATTCCCTTTGCACTGAT TCCCCTCCTCACGTTGGTCTCCAGTGAGCAGATCATGGGCACCTTTAAGATTGGGCCTGTTCTTGAGGTGCGTTAA
Protein sequence (LotjaGi1g1v0359400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSPSPEEDSKQGEEEEGNRLLQREEEDEEEAAYEAGEKIAVVDFDFETVDESTVPPFSWKKLWMFTGPGFLMSIAFLDP GNLEGDLQAGAIAGYSLLWLLMWATFMGLLIQLLSLRVGVATGRHLAELCRDHYPNWARLVLWFMAEVALIGADIQEVIG SAIAIQILSRGLFPLWVGVLITASDCFFFLFLENYGVRKLEAAFAVLIATMALSFAWMFGDARPSGKELMMGILIPRLSS KTIRQAVGVVGCVIMPHNVFLHSALVQSRKIDPQKKVRVQEALNYYTIESSVALTVSFMINLFVTTVFAKGFYGTKQADS IGLVNAGQYLEEKYGGGVFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLDLRLKKWLRALITRSCAIVPTIVVAIAF NRSEGSLDVLNEWLNVLQSMQIPFALIPLLTLVSSEQIMGTFKIGPVLEVR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 62 | 62 | - | – | |
| MobiDBLite | 1 | 33 | 33 | - | – | |
| PANTHER | 24 | 450 | 427 | 6.6E-250 | – | |
| PANTHER | 24 | 450 | 427 | 6.6E-250 | ||
| Hamap | 49 | 450 | 402 | 34.743 | ||
| TIGRFAM | 61 | 439 | 379 | 4.2E-127 | ||
| Phobius | 63 | 78 | 16 | - | – | |
| Phobius | 79 | 97 | 19 | - | – | |
| Pfam | 84 | 445 | 362 | 1.7E-120 | ||
| TMHMM | 97 | 119 | 23 | - | – | |
| Phobius | 98 | 120 | 23 | - | – | |
| Phobius | 121 | 139 | 19 | - | – | |
| TMHMM | 140 | 162 | 23 | - | – | |
| Phobius | 140 | 167 | 28 | - | – | |
| PRINTS | 142 | 168 | 27 | 5.1E-80 | ||
| Phobius | 168 | 172 | 5 | - | – | |
| TMHMM | 172 | 191 | 20 | - | – | |
| PRINTS | 172 | 191 | 20 | 5.1E-80 | ||
| Phobius | 173 | 192 | 20 | - | – | |
| Phobius | 193 | 203 | 11 | - | – | |
| PRINTS | 197 | 218 | 22 | 5.1E-80 | ||
| TMHMM | 203 | 222 | 20 | - | – | |
| Phobius | 204 | 222 | 19 | - | – | |
| Phobius | 223 | 241 | 19 | - | – | |
| TMHMM | 242 | 261 | 20 | - | – | |
| Phobius | 242 | 261 | 20 | - | – | |
| PRINTS | 246 | 269 | 24 | 5.1E-80 | ||
| Phobius | 262 | 281 | 20 | - | – | |
| TMHMM | 282 | 304 | 23 | - | – | |
| Phobius | 282 | 304 | 23 | - | – | |
| Phobius | 305 | 341 | 37 | - | – | |
| TMHMM | 336 | 358 | 23 | - | – | |
| Phobius | 342 | 363 | 22 | - | – | |
| PRINTS | 353 | 372 | 20 | 5.1E-80 | ||
| Phobius | 364 | 382 | 19 | - | – | |
| TMHMM | 379 | 401 | 23 | - | – | |
| PRINTS | 381 | 398 | 18 | 5.1E-80 | ||
| Phobius | 383 | 401 | 19 | - | – | |
| Phobius | 402 | 412 | 11 | - | – | |
| Phobius | 413 | 433 | 21 | - | – | |
| PRINTS | 415 | 434 | 20 | 5.1E-80 | ||
| TMHMM | 416 | 433 | 18 | - | – | |
| Phobius | 434 | 451 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion transmembrane transporter activity | Enables the transfer of metal ions from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0359400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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