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LotjaGi1g1v0360300.2

Overview

Field Value
Gene ID LotjaGi1g1v0360300
Transcript ID LotjaGi1g1v0360300.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Syntaxin protein; TAIR: AT1G27700.1 Syntaxin/t-SNARE family protein; Swiss-Prot: sp|Q946Y7|SYP61_ARATH Syntaxin-61; TrEMBL-Plants: tr|A0A1J7GBB1|A0A1J7GBB1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0360300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:83534865..83539297) extracted from Lotus japonicus Gifu genome v1.2.

GCTTTTTTAAAATAAAAAATGTGTTAGATTATTTATCATGTGATAAATCCTAAAATTCTAAAAATAATATTTAACAAACT ACTATTAGATTACATGTGTGAAGATTCAAGTTGAACGTCATTCTCATTCATCCTGTTCCTCTCAATAAGGAAGCTTCTAC GTCACCAGAAAACGACGCCGTACCACCTGGTATCGACATCATCATCATCATCATCATCATCATCATCACGCTCGCTGTAT ATCCATACCCCATCTATCAGGAACCTTCACAATTCAGCCATGAACGATAACACATGATCATTCCAAACCCTATATCACAG TTTTCTTTTCCAGAATAAAATCTGGTTCATTGCAATTGCAATCCCCAAAAACAATTAGGGTTCATAACAAAGAATAATCA CCGAACCTGCACTTGAAATTTGTTGCTGCAATACAAATTTTGTTCCATTACGCTTCACACGTTCCTGATTTGAGCGATTT ATTGCTGCCATAGCTTTGTTGTTGATTGTAATTTCATATTCATGGCGACGAGTTTTGACCGGTGGGAAAAAGATCCTTTC TTTAACGCCGCCGAAGAAGTTCAGGAATCTGCAGACAGGTTTGTTACCTATTACCCATTAGGTTTTCATTCTGCTATTTG ATTTTGGATTTATTCCCAAATGTTAATGGAGGAAACAAACAAACAAACAAACAAACAATGACCCTTTAGTTTTTTTGTTT GTTTTCAATTGGATTGATATGTAAGATTGGAAAAGCTTAAAACTTTCCCAGTTTTGTTGTTATTGAATTGCTATTACTGT GTGTGTGTTTTGAAGGATGGAGTCTGCATATAGGACATGTATTCACGCGAAGAGAGATCCGTCCTGCCCGTGGAACTCTG ATGAGCTCCGTCGAGATCTGCATACTGCCCTTGGCACTGCTAAATGGCAGGTAGGTAATTCCTTAAGTAAGATTGCTTTT TACTCAATCAATGAATTATGATCCATTATAGTGAATATATATGATGATGAATGTCATTATGTTGTTGTATTTTGGTGGGA ATTGCAGTTAGATGAGTTTGAACGGGCGGTCAGGTCTAGTTATGGAAAAAGCTCTGCGGAGGATGCGAAAATTAGGCACC GGGATTTTATTGTTGCTATTGGTGACAAGATTTCAAAAGTTGAGCATTTTTTACAAGAATCTTCTGTTGGTCCTTTAGGA GGTAGGAAGGCATCTCTGCCTTGGGTGTCTCTGGATCAAGGAGAACGAAACGAGCTTGCGTTGTTTCTTTCTGGAGCCCC AGCAGATGGAGGCAAAAATCAGCCGGCTAAATGTATCAGCAGAGACGGTGAAGATTCCCAGTTAAGTGATAGAGATTCCT CGGAGGAGAAACCACCCGGTCATCGCAGGGCAGCTAGTGCTGATGCTGACATTAGTTCTTGGAAAATTGCTGTTTCGGAT GATGTGCAACAATCGACTTCCTCCAATTGTTCTTCTGGTCCGATGCATAAGGTGGCTAGTCTCTCTGGATTTCTTAATTC CGTGGAAACCATCTCTAAGTTGAAGTGGCCTAAGAATGGTAATAGAAAGCTGAAAGCGGTGAATCATTATGATGAAACTG ATAAACCACTACTACCTTCAACTCAACTTAATGGGGTGGGTTCTTAATTTGCTTTTTGTTTTTCCCTGTTAACGGAGACT TGCTTGAGTATTTATGGTACATTTGCCGAATTACTAATACTTAATTATTTTCCCCCAAAAAATTAGGGTGCCCATGCATG CTACTTGAAAACTAAGAGCAGCATCGATAGTTGTGATGAATGTTATGATAAGCAACTCCAAGGGTGGTATGGGGCTATTC ACAGACAGCTTCAAAGATCTCAATACCAAATGCAGTATAATCGGCCTTTTCAAATAACCATATGGATTGTTATTCTCCTT TGCTTGATTGGTAAGCTCCCAATCTTTTATTGGTGCGTCTGAGGAAAATGTATGCACTTGTGTGATCTCAAATTTCAAAG TCTTAGGAACTACTTTGCACAACTTCGGAACTGGTGGAACTTTACTTATCTTTTTTAGGAAAATTCAATAATTTATGACA TTTATAATGCTTTTCATTTACCCCCACCCTACTCCGGTTGCAAAACTCCTTTTTTGCTCCTTCTTTTCATTCCTTTGTAG GTGAAAGCTACTTCTTGGTGCTCTCCATGCTTTTTTCATGATTTTGTTGTTCTTACGTCTTTCCCCCATTGCACCTGTGT TCATGATTCAGTTGCTCCCACATATTTCACACATGTGACATGACTACATGAGGCTATTTTGTAGTCATACAACTTCATTA TGCAATATGCATTCTGTTGACGGGAACCTTCAAATATCAATGCAAGATGGTTAGGAACGTCAATGTGAAGTGGGGAGATT TTGTCACATTTGCCCTTTTTAAAGATGTACTGAGAAATTTTATAGTTACTGTATTTAGTTTTTACCTACCAAAATGTGTT CTGTGAGCATCTTTATGCTTTATATATTGGCATATATTTGACTAAAGTTTAAGGTAGACAGAGAATCTGTATGTCAGTTC TAAAATCTAAATGCTCTTGAACTGTTGCTCATATTGATGTTAATTTCTGTTAAATTGTTGTTTCCTTTCCCCTGTCTTTC TTGCAACAGTATATGTTAGCTAATAGTTTTGATTTATCTGCAGTTTCAATTGCTTTTTGTACAATGTAGAAAGGAAGATT TATAGCATGTTTGGATCAGGATGTTTCTCTCTAGAATTAATTTTAGCTATAGAATCAATTCTAGAAGGATTTCCAAACAT GCACTTAGATACATGATCTATCTATCTCTGGTTGGTGGCTGAAGGGTATGCATGATCTATCGGTTTCTGGATGGCGGCAA TAATGGGGACGTACAAACAGTCAAAAGTCTTTTAATACAAGTTCCTGTGGTAGATGTTTTTGCATAAGCAAGCGAGTGTT TCTTTTTTCTGTTTCTCGCTAGCATACACGGTATCTATAACACATAAAAGTGCTTTATAGAAATACTATTTTGGGTGCTC TGTAACTGTAATCACTTCCTTACTTTTTATATATGTATTTTTCGTTTTGTAACTCCTATTTCAGAATGATCTGATCAAGA GCTTTCTCAACTCTGTTCACAAGATGTACATGCCAAAGTGAGGCTTAATAAATATTGTAATGTATATCATGCCTTCTCCA GAAAAATTGGAGGGTTAAAGCCTAGATTTGTCAATAATACTCTTACAAGTTTTCTTCTTTAGTTTCTCAGTATTTTTTTT TCTTTTGAAATTCAATTATTACAGCCTACTTTTAACAGAGTATATCAGTGCAATCTCTAAACTCCATACATTGTGTTAGG GGTGTGTTCATACCCCATATTAACCAAAGTCCAAAGATATGAATTAAGATATTTGTTTAAATGAGACAAAGTATCATATT TTCCGCATCTCTGCTTTGTTTTCTCTTGGTATCTCTCTTTATTTGTTTAAATAAGGCAAGCATAATATTAAATAATTGAT TAGCTTCAACAAAGCGACACTTAAACCTGACATATGAATTGCTCTTGTCCTCTTCAATACAAATAACGAAATCAATTTTC TTATTATAACTTATCCAAACACAGACTTGCTGCCTCTACCCATAGACATCAAACACTCAACCATATATAACATTCAGAAA GAGACTTTGACAATGACTAATACGTAACAGGGTCAGTCCTGGTGAGGCATCGGTAACCAAAATAGAGAGTAGCTACAACA AGTGGAACAAAGAACTCAAATAATGCCACAGACTTGGACTCAGCATCCTCTTTGATCACAAAAGCACTCATCTCTTGTTT GCTATTTGGTTCCTTGTGCACAACATCAATCTCCTGAACTGTGGCACCTTGGAGGATACCCACTTGGTACTTGAGGACCA AGTTTTGAGCTTCCTTGCTGTGCCCAACAGCATCAAACTCCTTCGTCACATCTTTCCCCGCAACCTCTAGCAACACGTCA TCCCCTCCCGGGTGTTCGATCAAGAACTTTGTGACATCCAACACCTACAACATTCAAATAATCAGTACGATTTAATTTTT TTATAGACAAATGTTAGTTGTTAGTCTTGTTAGTAAATTAATCATCCTCAGCGTTCGAACTCTAAAAAATCAAATAAGTT GTGCTAAGCCAGCATAACCGTCGATCAAAAAATCATTGCAAGTTCCCCGGACTCGCAGTAAATACGGTTTCCGGTTAGAC AGGTCGGTCTAGTCCGGTTTTAACCATTCTGCTATAATTTGTAAAGAGAAAAGAAGGAGGGATTTACTCTGCCATTGATC ACAACCCAACAATCTTTGTTGGACTTGTGTTGAGCAACCTGTGAGAGAGTGAAAACCCTTCGTTCTGCCATGATTCAAGA ATGAGAGTTCTAGTCACAAGAAACTTTCTATTT
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0360300.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGACGAGTTTTGACCGGTGGGAAAAAGATCCTTTCTTTAACGCCGCCGAAGAAGTTCAGGAATCTGCAGACAGGAT GGAGTCTGCATATAGGACATGTATTCACGCGAAGAGAGATCCGTCCTGCCCGTGGAACTCTGATGAGCTCCGTCGAGATC TGCATACTGCCCTTGGCACTGCTAAATGGCAGTTAGATGAGTTTGAACGGGCGGTCAGGTCTAGTTATGGAAAAAGCTCT GCGGAGGATGCGAAAATTAGGCACCGGGATTTTATTGTTGCTATTGGTGACAAGATTTCAAAAGTTGAGCATTTTTTACA AGAATCTTCTGTTGGTCCTTTAGGAGGTAGGAAGGCATCTCTGCCTTGGGTGTCTCTGGATCAAGGAGAACGAAACGAGC TTGCGTTGTTTCTTTCTGGAGCCCCAGCAGATGGAGGCAAAAATCAGCCGGCTAAATGTATCAGCAGAGACGGTGAAGAT TCCCAGTTAAGTGATAGAGATTCCTCGGAGGAGAAACCACCCGGTCATCGCAGGGCAGCTAGTGCTGATGCTGACATTAG TTCTTGGAAAATTGCTGTTTCGGATGATGTGCAACAATCGACTTCCTCCAATTGTTCTTCTGGTCCGATGCATAAGGTGG CTAGTCTCTCTGGATTTCTTAATTCCGTGGAAACCATCTCTAAGTTGAAGTGGCCTAAGAATGGTAATAGAAAGCTGAAA GCGGTGAATCATTATGATGAAACTGATAAACCACTACTACCTTCAACTCAACTTAATGGGGGTGCCCATGCATGCTACTT GAAAACTAAGAGCAGCATCGATAGTTGTGATGAATGTTATGATAAGCAACTCCAAGGGTGGTATGGGGCTATTCACAGAC AGCTTCAAAGATCTCAATACCAAATGCAGTATAATCGGCCTTTTCAAATAACCATATGGATTGTTATTCTCCTTTGCTTG ATTGTTTCAATTGCTTTTTGTACAATGTAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0360300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MATSFDRWEKDPFFNAAEEVQESADRMESAYRTCIHAKRDPSCPWNSDELRRDLHTALGTAKWQLDEFERAVRSSYGKSS AEDAKIRHRDFIVAIGDKISKVEHFLQESSVGPLGGRKASLPWVSLDQGERNELALFLSGAPADGGKNQPAKCISRDGED SQLSDRDSSEEKPPGHRRAASADADISSWKIAVSDDVQQSTSSNCSSGPMHKVASLSGFLNSVETISKLKWPKNGNRKLK AVNHYDETDKPLLPSTQLNGGAHACYLKTKSSIDSCDECYDKQLQGWYGAIHRQLQRSQYQMQYNRPFQITIWIVILLCL IVSIAFCTM
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR34949
1 328 328 3.1E-138 –
PANTHER
PTHR34949:SF6
1 328 328 3.1E-138 –
Phobius
NON_CYTOPLASMIC_DOMAIN
1 309 309 - –
Gene3D
G3DSA:1.20.58.90
8 110 103 7.7E-6 –
SUPERFAMILY
SSF47661
10 108 99 4.39E-19
IPR010989
Pfam
PF09177
11 102 92 1.3E-17
IPR015260
MobiDBLite
mobidb-lite
138 183 46 - –
MobiDBLite
mobidb-lite
158 179 22 - –
Phobius
TRANSMEMBRANE
310 328 19 - –
TMHMM
TMhelix
310 327 18 - –
Phobius
CYTOPLASMIC_DOMAIN
329 329 1 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016020
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
Subterm of
GO:0016192
Biological process Vesicle-mediated transport A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
Subterm of
GO:0048193
Biological process Golgi vesicle transport The directed movement of substances into, out of or within the Golgi apparatus, mediated by vesicles.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0360300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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