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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0363900 |
| Transcript ID | LotjaGi1g1v0363900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | carboxyl-terminal peptidase (DUF239); TAIR: AT5G25950.1 AslB, putative (DUF239); Swiss-Prot: sp|Q6FUA5|YSH1_CANGA Endoribonuclease YSH1; TrEMBL-Plants: tr|I3SZ69|I3SZ69_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0363900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:83944899..83948790) extracted from Lotus japonicus Gifu genome v1.2.
CATTAATAACACCTATTAATTTCCATGCCATTTATCTGTGCAAACGTCTTGTATAAATCTCAGTGCAATTTTTCATTTTG TATGTCCCTTGATTTAGTGAGTGAGAGTATACAGTATGGGAAGTTTTAAGGTTACGATTTTGTTGCTTTGGGTCCTGTTT ACCTCTTGTAGCCAAAAGCTCGAATTCAAAGTTGAAGCAAAAACATTATCATTACCTTCAGAAAGAGAAATAGAAGCCAA ATTGAAGATCCTCAATAAGCCTGCTCTAAAAACCATTAAGGTATTCAATTTCACACCCCCTTTTTATATTTGTTACCTTT CAGATTTTGCATTCTTGGCTTTATGTAATGTTGTCAAAGAGATTCTTTCTTTCTTTTAAAAAAAAAATTTATAAACCGAG ATTGAATGTTTATATTTAAAGGAGGATAAAATCTCAATTTTTAAACAAAACATTGAGATAAGATAACCTATTGGCCGGTT ATTTTGTTGGTAAGCTAAATAAATAAAATTCCCAAAAATTCGTCACAACAGTACATGTTGTCTATAAATTTATCTAGTTT GAGAAAATATTTTATTTCTATTTTGATTAATAATGATAAAATAAATATTTTATTAATCAATAATTAAATCCTTAAATAAA TAATTAAATAATTCATTGTAAAATCTCCCAATTGTTAAATTTGTGTACAATATTATTCATTTAAATATCTTATTTAAATG AATTTTGCAGTAATTTCAAAAAATACTATTATCCTTAATAATCTTAGAGTGAGTTTGTGTTTGTGTTAAAGTTTACACAA AAGTAAAAGTGCTTTAATTTTAACGAGCATCTATCATTTTCCTTACGTTTTGTTTTGAGAAAAAAGAGTTTTTTTTCTTC TCAATTTTGGAATGTGCATAGCGGGCTTAGTGGCTTACAATAGTTTCTAAGCACATTCTTAACCTTTTTTTTTTAGAACT ACATTCTTAATCGCTAATGTGAAATATTTAATGAAATCATATTTAGTATATTGAATAATACTATCCAATTTAATAATAAA GTATTAATAAACTGATCAGAAGGATTGTAAGTTATTGCCTTTGATTTTTTTTAAATGGGTTTGAATATGAAACTTACCTA TTTGTTTTTCATCAGAGTGAAGATGGTGATATTATTGATTGTGTTGACATCTATAAACAACCTGCTTTCGACCATCCTGC GTTAAAAGATCACACTATTCAGGTACGTTATTAAATTCATTTGTAGAAAGTGTGGCAATGTGGTCTCCACTGGTAACAAA TTTTTTGTGAAAAGTTGAGTCATGGTTATATTCTAAGTAAGTTGTAAATTATATTATATAATAACTAAGATATTAAAATA ATTTGTAAATGAAAAACACAATCTCAAAGCCTCTAGGAAAGAACCATCAATTGGTTCTCCTCCGAAGCACCAGGAGTATA CACAATCTCCTTCAGCACTTTTGAATCTTCTTCGATCAAAGTGAATTGATCCTCCTTTTTCCTATCTCTTGGCTTTACCT TATCAGGACGACCCATCGCCAAAACTCTGCCGCAATCTAGTCCAAAAGGCAGAGTCTATGACAACAAAGCCTCATCCGCT ATCCTAGATACTGGAGGAATAAACCTAGCTATAAAAGTTTGTGTTTAGATATAAGTCAACCTTCTCTAAAAAGACTTTTA AGCTAACAATTAAGTTTGTTTTACTTTTTATTGAAACTTGTATATATGAACTTTAGATTGGCGAAAGCTGGTTTCCAAAC ATGTTGATACTCAATTTTTTAGTAGTATGAGGATTAAAGTAAGATTTACCACACTTTTAGGGTTTGGCTAAGCTATAATC AATTTTTAGTGCAATCATGATATCTCAAAGTTAAGTAAAGATCATGCGGCTCAAAGTTTAATTAATCTCATGTATGTTCT TTGAATATGTAACGTCAATTTTCACCCAATAGTCGAGATTGTTAGATTTTAGTCATTACAATTACATAGTATCGATTTCT CTTTTAGGGTCTACACATAATTTTCAAATCATTATTCGGCATTTAACCAATGAAGCCCAATGCTGATGGAACCTTATAAT TCATTAAAAAATCACTAATATTATTTGATTTCAAATTATGTTTCTTATATTGATATATTGTGCATCTTTAACCAATGAGC GATGCAGAAAATACCTGATTTCCTTCTAGAATGGCAAAACTCAAGCTCTTCACAAGTGTTCCAGACATGGCAAAAAAGTG GAAGTTGTCCAGAAGGAACTATCCCCATTCGTAGAATTCGAAAAGAGGATTTACTAAGAGCAGGTTCTCTGGACCTCTTT GGGCGAAAACCACCAATACATTTCATGAATTCAACAAACACCATAAACTCTAATTCTCACAAAGCCAATGGTTCTAACGC ATACGTTCCAGAAAATCGTTCGGTATGTACATATTGTATAATTATACTCACACATATTGTATATCATTTTGATTTCATGT AGCTAACTAATTGTGACATGACATGCAGAAATCAAGTCTTATAACAGTGGGATACAATTATATAGGTGCAGAAGCAAATA TTAACGTTTGGAATCCAAGGGTTGATTTGCCGAATGACTTCACCACTGCTCAAATATGGCTTAAGGCTGGAAATGGTCCT CAATTTTTTCAAAGCGTCGAAGTAGGCTGGATGGTTAGTTTACATTCACTATTTACAATTCCATATCAACCAGACCTTAT GTGTGAGTGTATAAAATGTGGAGTATCATAAATGAACATGAAATTGACTAATTATGTTTTTATACATATTATGGTTTAGG TGAATCCAAAATTGTATGGTGATAGAGCCACTCGATTGTTTGCATATTGGACTGTAAGTTATCAATTAATCATTGAATGA TCATTCATTTTGCTTGATGGTCCGGATTCTTAAAATAATATTTAGAGGAGAAAATCAAATTAACATTTATTTTTTGGGTT TATTAATTTTTGGGTGCAGACGGATTCATACAAGTCAACAGGATGCTTTGATGTTACTTGCTCAGGGTTTGTGCATACAG GCCAAGTAGCACTTGGTAGTGCCATAACACCTATTTCGACCCCATACGGCACACAATATGAAATCAATGTTGGAATCTTC TGGGTAATGCTCGTGTCTGCTTTTTATACGCAAATATATTATACTGAATCATTTTAAGCACAAATAAAATATTTTGTACT AACCAAAGAATTAATTTATCTCGATTACATGGTAGCATCAACTAATATATCAAATAAATATTTTTTTCGGTGGCCTAATT CAGGATCAATCAGGTAATTGGTGGTTTAGAGTAGGCCACAATAACCCTGTTGGTTATTGGCCTGCGAAATTATTTAAGCC AGATGGGTTGAGTCACAGTGCCACATCAGTTGAGTGGGGTGGACAAGTGTACAGCCCGATGGTGAAGAAAAGACCCCACA CAAGAACCGCCATGGGTAGTGGAGATAGTATAGACAGTCGTTGGGGTACCGGATGCTTCATGCGCAATCTGAGAATTAAG GATTACTCGCAACAACTTAAGTACCCTGAAAGTGTAAGTACAAGGGCTGAAGAAGAGTATTGCTACAATGTCTTCAATGA GGCTAAATATGGACAAGAACCTACCTTATTTTTTGGAGGACCAGGACAAGCACCTCCTTATTGTCCTTGAATTTCCATAA AATAAAGTTACATAGAAAAACGCTTTTGACTAAATATATAATAACAAAAGGAAAATGTTTTTTAATTAGTGTGTAAGGTT TTTGGTAAAATTAATGTATGAATGAATATGACTAACCATTGAATGCAAGTAAGTGATTGTGGAATGATTATTTTTTGTTA TGTTTTCCTTTTTTTTTAAGGATTGACTAAATGAACTATAAGTGTTATTTAA
CDS sequence (LotjaGi1g1v0363900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAGTTTTAAGGTTACGATTTTGTTGCTTTGGGTCCTGTTTACCTCTTGTAGCCAAAAGCTCGAATTCAAAGTTGA AGCAAAAACATTATCATTACCTTCAGAAAGAGAAATAGAAGCCAAATTGAAGATCCTCAATAAGCCTGCTCTAAAAACCA TTAAGAGTGAAGATGGTGATATTATTGATTGTGTTGACATCTATAAACAACCTGCTTTCGACCATCCTGCGTTAAAAGAT CACACTATTCAGAAAATACCTGATTTCCTTCTAGAATGGCAAAACTCAAGCTCTTCACAAGTGTTCCAGACATGGCAAAA AAGTGGAAGTTGTCCAGAAGGAACTATCCCCATTCGTAGAATTCGAAAAGAGGATTTACTAAGAGCAGGTTCTCTGGACC TCTTTGGGCGAAAACCACCAATACATTTCATGAATTCAACAAACACCATAAACTCTAATTCTCACAAAGCCAATGGTTCT AACGCATACGTTCCAGAAAATCGTTCGAAATCAAGTCTTATAACAGTGGGATACAATTATATAGGTGCAGAAGCAAATAT TAACGTTTGGAATCCAAGGGTTGATTTGCCGAATGACTTCACCACTGCTCAAATATGGCTTAAGGCTGGAAATGGTCCTC AATTTTTTCAAAGCGTCGAAGTAGGCTGGATGGTGAATCCAAAATTGTATGGTGATAGAGCCACTCGATTGTTTGCATAT TGGACTACGGATTCATACAAGTCAACAGGATGCTTTGATGTTACTTGCTCAGGGTTTGTGCATACAGGCCAAGTAGCACT TGGTAGTGCCATAACACCTATTTCGACCCCATACGGCACACAATATGAAATCAATGTTGGAATCTTCTGGGATCAATCAG GTAATTGGTGGTTTAGAGTAGGCCACAATAACCCTGTTGGTTATTGGCCTGCGAAATTATTTAAGCCAGATGGGTTGAGT CACAGTGCCACATCAGTTGAGTGGGGTGGACAAGTGTACAGCCCGATGGTGAAGAAAAGACCCCACACAAGAACCGCCAT GGGTAGTGGAGATAGTATAGACAGTCGTTGGGGTACCGGATGCTTCATGCGCAATCTGAGAATTAAGGATTACTCGCAAC AACTTAAGTACCCTGAAAGTGTAAGTACAAGGGCTGAAGAAGAGTATTGCTACAATGTCTTCAATGAGGCTAAATATGGA CAAGAACCTACCTTATTTTTTGGAGGACCAGGACAAGCACCTCCTTATTGTCCTTGA
Protein sequence (LotjaGi1g1v0363900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSFKVTILLLWVLFTSCSQKLEFKVEAKTLSLPSEREIEAKLKILNKPALKTIKSEDGDIIDCVDIYKQPAFDHPALKD HTIQKIPDFLLEWQNSSSSQVFQTWQKSGSCPEGTIPIRRIRKEDLLRAGSLDLFGRKPPIHFMNSTNTINSNSHKANGS NAYVPENRSKSSLITVGYNYIGAEANINVWNPRVDLPNDFTTAQIWLKAGNGPQFFQSVEVGWMVNPKLYGDRATRLFAY WTTDSYKSTGCFDVTCSGFVHTGQVALGSAITPISTPYGTQYEINVGIFWDQSGNWWFRVGHNNPVGYWPAKLFKPDGLS HSATSVEWGGQVYSPMVKKRPHTRTAMGSGDSIDSRWGTGCFMRNLRIKDYSQQLKYPESVSTRAEEEYCYNVFNEAKYG QEPTLFFGGPGQAPPYCP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 18 | 18 | 5.0 | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_EUK | 1 | 18 | 18 | - | – | |
| Phobius | 1 | 21 | 21 | - | – | |
| Phobius | 6 | 16 | 11 | - | – | |
| PANTHER | 9 | 418 | 410 | 9.3E-140 | – | |
| PANTHER | 9 | 418 | 410 | 9.3E-140 | – | |
| Phobius | 17 | 21 | 5 | - | – | |
| Phobius | 22 | 418 | 397 | - | – | |
| Pfam | 53 | 155 | 103 | 1.7E-35 | ||
| Pfam | 187 | 410 | 224 | 4.3E-66 | ||
| Gene3D | 193 | 258 | 66 | 1.4E-7 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0363900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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