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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0364200 |
| Transcript ID | LotjaGi1g1v0364200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT3G49690.1 myb domain protein 84; Swiss-Prot: sp|Q9M2Y9|RAX3_ARATH Transcription factor RAX3; TrEMBL-Plants: tr|A0A0R4J3G3|A0A0R4J3G3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0364200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:84000875..84004236) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTGGGCATGTTGTGTGCTTGTATATACTTGGACAGCGAGGGTCAGAGGGGAGTGTACTTCAAAAAGTTGCAAGAAAA AATTGATTCCAGTTAAAGAAAGACAAGAAGAACAAACCTTATTCCCCTGTTCTGCCAATACTAATTAATTTCTGAAATAC CTTTCTTTTCCATCACACCCTCATATAAAAATAACACCATGGCATGTTCTTGGAATCATGTTTATCCGCTCCAGCTCTAG TTTTATATTCATTAACACACACACTCTCTCTTTCTTTTCTTTCTCTCTCTCTCTCTAATCAAGCTTAGAGGCAACAACAA ACACCATGGGAAGAGCACCTTGCTGTGACAAAGCAAACGTGAAGAAAGGCCCTTGGTCTCCAGAAGAAGATGCCAAGCTC AAGTCCTACATCGAACAGCACGGAACCGGTGGTAACTGGATCGCTTTGCCCCAAAAGATTGGTATTAACTCTTAATTATG CATCTACAATACACACTTGCAACTAAATTAACCCTATTTAGTTGTGACTCCATCAATATATTCACTTAAGAAACTTTTTT CTTTTTTTTTGTATTCATGTAACCAAACAGGCCTTAAAAGATGTGGCAAGAGTTGCAGACTCAGGTGGCTAAACTATCTT CGCCCTAATCTCAGGCACGGTAGCTTCTCAGAAGAAGAAGACAACATTATTTGCAGCCTTTACGTTAGTATTGGAAGCAG GTAGGTTTTTGGTGCAACCAAGTTTGACACATGTTTTATTTTTTTCTTTTTCTTTTTATATTCCCTGTTTGGATGTTAGT TGACCGCAAACTCAATGGTACTTACATCCTAGAATAGAAGAAGAAGAACAGTTTAGCTATGAAGTACATGGTAACGCCTG TTTGCAATAGCGTCAACGAATTTCTTAACATAGCCTTAAGCCCTCCTGAAGTACTTTTTATTTTTCCTTTCTGTGTGATG GATGCAGGTGGTCTGTGATTGCAGCTCAATTGCCAGGAAGAACTGATAATGATATAAAGAACTACTGGAACACAAGGCTG AAGAAGAAGCTTCTAGGGAAGCAGCGTAAAGAACAACAACAACAACACGCACGTAATAAAGGCATCAAGCATGAAATTAG CAATAGATCATCAAGTGGGGATCAATATTCCTCATCTTCTTTGGTTGTAAACAACAATAACATTACTCAACAGCCATATT CTTGGCCACAGGTTATGCCTGTGTTGCCACAATTTCCTTACACAAACCAAGGACCGAGTTTCAATGACCAAGACTCTATT AAGAAACTTCTAATCAAGCTTGGAGGAAGATTCTCTGATGATTACTATCACGAACCCGTCGTAGATGTGTTGAATAATAA TCTTCAATTCCCTGATGGTCTTCCTCCAACACAACAAATTCATGAAGAACAAGTCCATGTTGTTGGCTCTTCAGGTGGTT GCAACATAAACTCCATTAACAACAGCAACGAAGTGCAAGGAAGTTTTGCAGGAGAAGGAAGTTTCTTAGAAATGTTGGGG GAAATGGAATCTATTGAACATTACCAACAAAGGTTAAGTGGGATAGAGTGTTTCTATGGGGAGGACATGAACATGATCAA CGGTGATAAGATCATAGGGTCTTCCAGCTGTAGCCAAAGTACTAACTGGGGTGACACAAATAGTAGCAGTCTGATATATT CTTCCCCTCCTCTTGTTGCTTCAAATTACCAAGAGTCGACGCCACAAGAATGCGCATTTCGAGAGCAGAACTACCCGGGG GCGCAATAGGAACCTTGTATATGCATGAATTACTATCACATTCTATTCCTTTCTCGCTCTGGGTATCTATCAGCTATCCG CATGCGGATCAGATGTCCACATATCATTACAAATTATAAATTTATGGAAGTTGGAACTTTTGGAACTATTTAAATTTGTA GCAAACATTAGAAGCTTTGTATTTGATTCCCATTTAGACAGTAAATTCAGCTTTATATAAAGAACTAGCGATCAATGTGT CTGAGGGATCATGTGCTGATCTGCTAGTGGAAGTGCCGTTTTAATTTATCTGACATGTTTGTAAATTTGAGAATTTATTT TTATTATGCTTTGTGTTCTAATTGGATATTTTGCAGCATGTGGCCTAAACTCAAGTATGCAAATTAGTCTCACATCTATA CTCAGATACTCTTGACTTAATCGCTGGAGATAAAGCATTTGTCAGAAAAAACTGTTCAACTATAACTGGTACGTACCGTT ATTTTCACACATTTAATTATGATTTGCATGTGCGTATGCAAGACAAAATTCTAGGTAATTGTAGGAAAGGGCTACTCTAG GGACGGTGCCATATAAATTTAGAGTATAGACACTGCTCCGGAGTCAGCACTGGATAATATAGTTGGTTATGGTGTGTGTA TATAGGGATCCCTTAAAAATGCAAGTGTGCTTACTAGTATCTTTGGTTACACGCTGAAATGTTCTACACTCACTTCTAAT TAAAAGTTACAAGTTTGAGCTTCTGAGATTTCTGCATTAATAAGTAACTTCTACAAAGCAATTTCAGGATTAAGTTATAG GTGTTCCACACCTTCTTTAGAATTGTTGTGCCTTGAAGCCTAGTGCCACAATCCTACTCCTTTTCCTAATCCTAATCCTA GTGTGAGATACTACAAGGTACATCCACTCATATCCTTCTCTCCATTAGAAAACCCTTGAGCTCTCTCAGTCTCTAGCTTA GGCATCAAAGTGTCTTCGCAGGACCCCTCAGAGGGCGAGTCAGACTATAGAGCAACAACAGAACCACGTCGAGGCACCTT CTTTCCAGCCCTTCACTACTGAGAATGCGATGTTCTTTTTCAATCAACGCTCACTGAAGTAATTTGACCTGAGAGGGGGG GGGGGGTTTCCTATGAAGGAATCTTTGTGAAGTTGTGGCCGAGCTGCTTTCAAACAACTTCCCCCTTCGATTGTTCCAAG ATGTTGAACCTTCAAGAGGTCATGAACCTAAAGCAGGCCTAAAGAATTACTTGTACTTCCCGTCTTCTAAACAAGATGGT CCTTCCCTAGTTCGGGCGGGAACTTTCTCAGAATGCGTCTAAAAAATGGACAAAGTTAAGAAATTAAGCCTCAAACTTGA GAAAATTGAAAATGAGAGGGAGAAGTTGACCAAAGAGATTGAGGACCTTCATAACGAGGTCAATCCTACAAGCTTAGTAG CTAGAGGGAAATTAGAACTAGATGTTCTAAAGTGAGTTCAAAGGTAATTGGATGCATAAAATTTGATAATTTCTTATACA ATTGAAGAGATAAAACTCTTATTTGTTGAATTTAGTGCATCTTCTAATTGAATATCGTGTGCGTTTATTTGTTGAATTTA GC
CDS sequence (LotjaGi1g1v0364200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAGAGCACCTTGCTGTGACAAAGCAAACGTGAAGAAAGGCCCTTGGTCTCCAGAAGAAGATGCCAAGCTCAAGTC CTACATCGAACAGCACGGAACCGGTGGTAACTGGATCGCTTTGCCCCAAAAGATTGGCCTTAAAAGATGTGGCAAGAGTT GCAGACTCAGGTGGCTAAACTATCTTCGCCCTAATCTCAGGCACGGTAGCTTCTCAGAAGAAGAAGACAACATTATTTGC AGCCTTTACGTTAGTATTGGAAGCAGGTGGTCTGTGATTGCAGCTCAATTGCCAGGAAGAACTGATAATGATATAAAGAA CTACTGGAACACAAGGCTGAAGAAGAAGCTTCTAGGGAAGCAGCGTAAAGAACAACAACAACAACACGCACGTAATAAAG GCATCAAGCATGAAATTAGCAATAGATCATCAAGTGGGGATCAATATTCCTCATCTTCTTTGGTTGTAAACAACAATAAC ATTACTCAACAGCCATATTCTTGGCCACAGGTTATGCCTGTGTTGCCACAATTTCCTTACACAAACCAAGGACCGAGTTT CAATGACCAAGACTCTATTAAGAAACTTCTAATCAAGCTTGGAGGAAGATTCTCTGATGATTACTATCACGAACCCGTCG TAGATGTGTTGAATAATAATCTTCAATTCCCTGATGGTCTTCCTCCAACACAACAAATTCATGAAGAACAAGTCCATGTT GTTGGCTCTTCAGGTGGTTGCAACATAAACTCCATTAACAACAGCAACGAAGTGCAAGGAAGTTTTGCAGGAGAAGGAAG TTTCTTAGAAATGTTGGGGGAAATGGAATCTATTGAACATTACCAACAAAGGTTAAGTGGGATAGAGTGTTTCTATGGGG AGGACATGAACATGATCAACGGTGATAAGATCATAGGGTCTTCCAGCTGTAGCCAAAGTACTAACTGGGGTGACACAAAT AGTAGCAGTCTGATATATTCTTCCCCTCCTCTTGTTGCTTCAAATTACCAAGAGTCGACGCCACAAGAATGCGCATTTCG AGAGCAGAACTACCCGGGGGCGCAATAG
Protein sequence (LotjaGi1g1v0364200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRAPCCDKANVKKGPWSPEEDAKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNLRHGSFSEEEDNIIC SLYVSIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKQRKEQQQQHARNKGIKHEISNRSSSGDQYSSSSLVVNNNN ITQQPYSWPQVMPVLPQFPYTNQGPSFNDQDSIKKLLIKLGGRFSDDYYHEPVVDVLNNNLQFPDGLPPTQQIHEEQVHV VGSSGGCNINSINNSNEVQGSFAGEGSFLEMLGEMESIEHYQQRLSGIECFYGEDMNMINGDKIIGSSSCSQSTNWGDTN SSSLIYSSPPLVASNYQESTPQECAFREQNYPGAQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 342 | 340 | 2.3E-115 | – | |
| PANTHER | 3 | 342 | 340 | 2.3E-115 | ||
| Gene3D | 7 | 68 | 62 | 1.9E-19 | – | |
| ProSiteProfiles | 9 | 62 | 54 | 14.467 | ||
| SUPERFAMILY | 11 | 109 | 99 | 1.06E-26 | ||
| SMART | 13 | 64 | 52 | 5.4E-13 | ||
| Pfam | 14 | 62 | 49 | 2.6E-14 | ||
| CDD | 16 | 62 | 47 | 2.72425E-10 | ||
| ProSiteProfiles | 63 | 117 | 55 | 21.898 | ||
| SMART | 67 | 115 | 49 | 2.4E-11 | ||
| Pfam | 69 | 111 | 43 | 1.4E-10 | ||
| CDD | 70 | 113 | 44 | 1.17908E-8 | ||
| Gene3D | 70 | 137 | 68 | 1.2E-19 | – | |
| MobiDBLite | 118 | 153 | 36 | - | – | |
| MobiDBLite | 120 | 140 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0364200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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