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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0364700 |
| Transcript ID | LotjaGi1g1v0364700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Homeobox associated leucine zipper protein; TAIR: AT4G37790.1 Homeobox-leucine zipper protein family; Swiss-Prot: sp|A2XE76|HOX19_ORYSI Homeobox-leucine zipper protein HOX19; TrEMBL-Plants: tr|A0A151TTF7|A0A151TTF7_CAJCA Homeobox-leucine zipper protein HOX19; Found in the gene: LotjaGi1g1v0364700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:84216156..84218629) extracted from Lotus japonicus Gifu genome v1.2.
AGGAATATAATTGAGATAGTAACATATTACAAATAATGGAAATGTTCACACATTTATTCCTCAAGTAAAATCTCTAAGAT TGAGTTATGTGTATGGAAAAATTACTGTTAGAAGAGATAGTTCCGCTAGAATGTGAATGTTTTGTGTTGAAATAAATAAA ACCTGTTCTTAATAATATATATATCTTTAAAGAGCACTAGTATCATTGGTTGCTTAATAAAATATGAGTCCTCCTCATAG AGGCACAAACTGACCTTCTAGCCAATCATATAAATCCATAAGTCCGGCCTCCCATCACTCTCCAATATCCAATATATTCT TCCATCTCACATCTTCCTCCTCATTATATATGTAGCGCACACAATTACAAGATTGCAAGCAACATACTTGGCCAGTTCAG GACATTCATCTCATCACAATACAAATTAAACCATGGTTGGTTTTGATAACTCTATCCCAGGCCTTCGACTTGGTCTTGGT CTTGGCCATTGCATGATGAAAACTGATCATGAACACAGGAAGAAGAAAAAGGAGGATCAGGATCCATGTAACAAGTTAGC ATACCCATCTCTTAAGTTAGGACTCCCTGATCATGATGATGTTGATCTAACTACAAATAACAATGATCAATTAATACTAG CTACAAAGACTGAATCTGAGGATTGGTTTCATCATCCACATACCTCTAATTCTCCAAGCGCGGTTTCTTCATTAATCTCC AACTCTTGTAGCATCAAGAGGGAGAGAGATCAGTTCTCAGGTGATGAAGAATTGGAGCTAGATGTAGAGAATACTCACTC AAAGGCCGTTGATGTTGAAGAAAATGGTAGTCCCAGGAAGAAACTCAGGCTCACCAAACAACAATCCCTGCTCTTAGAAG ATATCTTCAAGCAGCATTCTACTCTCAATCTGGTACATATCTTAAAGTTCTTAACTAATTAAGCTGTTAATTTATAAGTA CATGATATGATTTTTGTTCTCGTTAATTCTCAAATGATTGTTGGTTTTAAGGAAGGTTTTAATTTTCATTATTAGACAAT AGATACAGAAGAATTAGATAGGAGCTGAGTACTTAACTCTTCTCCTATTCTGTTTTTCCCTACTTAGTTAGATAGCAGAT TAGCTTGTACATATAAATAGCTTACTGATACTGTACACTCATTCAATTCATTCAATAAAATCATTTTTCTTATTCTGGTA AGATTCATTTTCCTTGACACATTCTCCAGAAACAAAAGCAAGAGTTAGCAAGGAAGCTGAATCTGCGGACGAGACAAGTG GAGGTGTGGTTTCAGAACAGAAGAGCCAGGTTACTTCTCCCACTACTACCTAGCATGTTGGGTTCCCATTGTTTAACAGA ACTAGAATTGATTTCAGCTCTTAAATCAATCATGGAATGAAGCTACAAATCATAGATTCTGCAGTGAACATTATCAATTG TGAAATTTATAACCGGATTTCACAGCATTATCTTACAAAAAAACACTTTAATCTTCAATTCACTTTTACTGTGATCAAAT TTATTAAAATCTATTCGATCCGCAATCAATTTTAATAATGCTGATTCAATTAGACATTAAATGTATCCACAAAAATGATA AACCTATGCAGGATATGATGCTCAATTAACTAATTCATTGTCAGTGTACTAACTAGTAATGTTCTTGTTATGCAGGACAA AACTGAAACAAACAGAATCCAACTGTGAGTTATTGAAGAAGTGCTGTGAAACTCTAACTGAGGAGAACAAGAGGCTGCAA AAGGAGCTGCAAGAGATTAAATCAATGATGAAAAGTACAAAGCCAGATCAAACTTTGTATATGCAGCTTCCACTTACAAG CCTCACCATTTGTTCTTCTTGTAAGCGAATTCGCAGTGGCGAGAGCAATAATGGCTCTGCTTCTTCTTCTACTACTACCA CAGCCTTTACTATTAGTCCAAAGAGGTCCATCATCACTTCTATAGGTGCTAGCTACTCATGATGAGGCCAAATATAGAAC TTCATTTTCTGGCAAACCGTGGCTTTTGTTAATCCACCTTCCATCTTTTCTCAGAATTATAAGCTAGTCTCAAAAGTTTC TGTCAATATTCCATTTTAGTTTTAGAATTTATTCTTGAAGATTTCCAAATGCACTCCACCTTATCATATATATGGACTCA TCAAAGTTGTACATGAATTTTCTGGCTCTAGAATTGTTTTGACTTTCCATGTCAAGTTGTCAGCCCATTGGATATGATTT AATTTTGTTGAAAAGAGAAGTCTCACATCTTACAACAAAAATCCCACTATATAATTGAGAATTAAGTTTCATTAAAGCAG AAAAAAGAAAGAGATGAGAAGATTAGAGAGAGAAAAATAAAAGATTTAATAAGCCATATGATTGAAAGAAAAGAAAAAGA TAGATGGCAAAAGAATATGAAAATGAAGTTGGAGCACAAATGAATCACAACTAATAATTGAGTATGTACAGGTC
CDS sequence (LotjaGi1g1v0364700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGGTTTTGATAACTCTATCCCAGGCCTTCGACTTGGTCTTGGTCTTGGCCATTGCATGATGAAAACTGATCATGA ACACAGGAAGAAGAAAAAGGAGGATCAGGATCCATGTAACAAGTTAGCATACCCATCTCTTAAGTTAGGACTCCCTGATC ATGATGATGTTGATCTAACTACAAATAACAATGATCAATTAATACTAGCTACAAAGACTGAATCTGAGGATTGGTTTCAT CATCCACATACCTCTAATTCTCCAAGCGCGGTTTCTTCATTAATCTCCAACTCTTGTAGCATCAAGAGGGAGAGAGATCA GTTCTCAGGTGATGAAGAATTGGAGCTAGATGTAGAGAATACTCACTCAAAGGCCGTTGATGTTGAAGAAAATGGTAGTC CCAGGAAGAAACTCAGGCTCACCAAACAACAATCCCTGCTCTTAGAAGATATCTTCAAGCAGCATTCTACTCTCAATCTG AAACAAAAGCAAGAGTTAGCAAGGAAGCTGAATCTGCGGACGAGACAAGTGGAGGTGTGGTTTCAGAACAGAAGAGCCAG GACAAAACTGAAACAAACAGAATCCAACTGTGAGTTATTGAAGAAGTGCTGTGAAACTCTAACTGAGGAGAACAAGAGGC TGCAAAAGGAGCTGCAAGAGATTAAATCAATGATGAAAAGTACAAAGCCAGATCAAACTTTGTATATGCAGCTTCCACTT ACAAGCCTCACCATTTGTTCTTCTTGTAAGCGAATTCGCAGTGGCGAGAGCAATAATGGCTCTGCTTCTTCTTCTACTAC TACCACAGCCTTTACTATTAGTCCAAAGAGGTCCATCATCACTTCTATAGGTGCTAGCTACTCATGA
Protein sequence (LotjaGi1g1v0364700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVGFDNSIPGLRLGLGLGHCMMKTDHEHRKKKKEDQDPCNKLAYPSLKLGLPDHDDVDLTTNNNDQLILATKTESEDWFH HPHTSNSPSAVSSLISNSCSIKRERDQFSGDEELELDVENTHSKAVDVEENGSPRKKLRLTKQQSLLLEDIFKQHSTLNL KQKQELARKLNLRTRQVEVWFQNRRARTKLKQTESNCELLKKCCETLTEENKRLQKELQEIKSMMKSTKPDQTLYMQLPL TSLTICSSCKRIRSGESNNGSASSSTTTTAFTISPKRSIITSIGASYS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 278 | 272 | 1.3E-87 | – | |
| PANTHER | 7 | 278 | 272 | 1.3E-87 | – | |
| Gene3D | 126 | 198 | 73 | 4.6E-17 | – | |
| SUPERFAMILY | 130 | 192 | 63 | 1.58E-17 | ||
| ProSiteProfiles | 131 | 191 | 61 | 17.151 | ||
| SMART | 133 | 195 | 63 | 1.7E-15 | ||
| CDD | 134 | 192 | 59 | 9.8037E-15 | ||
| Pfam | 135 | 189 | 55 | 7.5E-16 | ||
| ProSitePatterns | 166 | 189 | 24 | - | ||
| Coils | 190 | 227 | 38 | - | – | |
| Pfam | 191 | 225 | 35 | 3.5E-7 | ||
| SMART | 191 | 238 | 48 | 9.5E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi1g1v0364700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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