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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0364800 |
| Transcript ID | LotjaGi1g1v0364800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Endo-1,4-beta-xylanase, putative, expressed; TAIR: AT1G58370.2 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein; Swiss-Prot: sp|A3DH97|RSGI6_CLOTH Anti-sigma-I factor RsgI6; TrEMBL-Plants: tr|I1K8B0|I1K8B0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0364800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:84235413..84238452) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTAGGATAATATGACAATATTTGATCCCTATAGTCTAATGTGGGAATAAACTTTTGTTGTAATCAAAATTGCAATAA ATGTGTCTCAGTTTCAATTTCTTTCTTTGTTTCATGAAATCTACAGACACACCAATTTTTGATACATTTTCCCCTTGTTT CAGAAGAAAACAAACACAGAATGTCTTTCCACTGATGATGAAAACATTATAATAAATCCTCAGTTTGAGGGTGGCCTGAA CAGTTGGTCTGGAAGAGGCTGCAAGATTGTGTTACATGATTCCATGGGAGGTGGTAAAATACTTCCAAAAGTTGGGAAAT TCTTTGTAGCTGCAACAGAACGCACGCAAACCTGGAATGGAATTCAGCAGGAGATCACCGGAAGAGTGCAGCGCAAGCTA GCATATGAGATCACTGCTTTGGTTAGGATATTTGGGAACAATGTCACTACTTCTGATGTGCGAGCTACATTGTGGGTTCA AACACCGGATCTTCGAGAGCAGTACATAGGCATTGCCAAGTAAGTGTCTATCTTATGTCTTCGGTCGTGCTATATGTTAC GAAGGAAAGTTGCAAGAAATGTTGATGTGCCAAAGTTAACACAATATAGTCTTTTCCCATTTGATGAGATTGCTTGTATG AATTGAAACTCATTGTAATATCATATCATTAAGCCATGTTTATTGTCAAAGTTTTAGAATCTAAAACTTAAGAATGTTCT CTAAAAAACTGTTTTTATTGCTGAAAGAATGTTGTGCTTACTAAAGTGTGCAGGCAACAGATAAAGATTGGGTTGAAATG CAGGGAAAGTTCCTTCTCAATGGCTCCCCTTCAAAAGTTGTTCTTTATTTAGAAGGTCCCCCACCAGGAATTGACATTCT TCTCAATACTTTGGTTGTAAAGCATGCAGCTAAAACACCACCTTCATCGCCCCCAGATTTTGAGGTTTTGCTTTCAACAT ATTTTATGTTAATTGTATTGCCAATTTTGTATGTTTCAATGCCCTGAACATTGATGTTGTTTTGCAGAATGCTGCTTTTG GTGCTAACATAATTGAGAACAGTGATCTCGCTGATGGCACCAATGGCTGGTTTCCCCTTGGTAACTGCACTTTGAGTGTT GCAACTGGTTCGCCTCGTATAATTCCACCAATGGCAAGAGACTCTCTTGGCCCCCATGAGTCCTTAAGTGGACGCTACAT CCTTGTAACCAACCGCACACAAACATGGATGGGTCCTGCTCAAATGATCACTGAGAAGTTGAAACTCTTCTTAACTTATC AAGTTTCTGCTTGGGTCAGGATAAGCTCAGGATCAAGTGGGCCTCAAAATGTGGGTATTTCCCTCAGTGTTGACAACCAG TGGGTGAATGGAGGACAAACTGAGGTTGCTGATAGCAGGTGGCATGAAATTGGTGGGTCCTTTAGACTTGAAAAACAACC ATCTAAGGTTATGGTTTATATTCAAGGTCCTGCTTCTGGTGTTGATCTAATGGTTGCTGGACTTCAAATTTTTCCTGTGA ATAGAGAGGCAAGGTTTGCATACTTAAGGAGGCAAACAGACAAGGTAACATCTAGGTTTATTTATATTATACCTAGTTTA ATTTTTCAGCATAAAGACATGGAAAGTGGAAACTTATCAAAGATGTCTTGAACTGATATAAATGAGTAATATATGGATAA CACACCTGGCCTACCAAAACTAAAGAGTGAAATCAAATATCCAAAATGTCTCGTAAACATCTATATTGCCATCCAAACCT TGATACTCTATCATAATTGATTATGAAATCCCCAAACGGATAACCAAACACACTCTTTGACAGTTATGTCTGATCTTTTT ATTATATATCCATTCTGAATTGATAGGATATGTGATAGTTTGTAAATTTTATGTTTCTAATTCCAAACATTATCACTTGC TGCTATGCAGATTCGTAAGCGTGATGTTACTCTAAAATTCTCCGGGCTAGACTCTTGTGGGTACACCTTTGTGAAAGTTA GACAAACACAGAACGATTTTCCAATTGGATCATGCATCAACAGAACAAATATTGACAATGAAGACTTCGTTGACTTCTTT GTGAAACATTTCAACTGGGCTGTGTTTGGCAACGAGTTGAAGTGGTATTGGACTGAACCACAACAAGGAAAATTAAACTA CAAGGATGCTGATGACATGTTAGACTTGTGTCAGAAGCACAACATAGAAACTCGTGGTCATTGCATATTCTGGGAAGTGG ATGGAACTGTTCAACCATGGATCAAAGCACTGAATAAAAATGATTTGATGATAGCTGTCCAAAATCGCTTAACTAGCTTA TTGAATCGCTACAAAGGAAAGTTCAGACACTATGATGTCAACAATGAGATGTTGCATGGTTCATTTTATCAGGATAGACT AGGCAAAGATATCAGAGCAATCATGTTCAAAACTGCACACCAATTAGATCCATCTGCTACCCTTTTTTTGAATGATTACC ATGTTGAAGATGGAGGTGACACAAGATCATCTCCAGAAAAGTACATTCAACAAACAATTGGTCTGCAAGATCAAGGTGCC CCAGTTGGTGGAATTGGAATTCAAGGTCACATAGATAGTCCTGTTGGGCCTATTGTTTGTTCTGCACTTGACAAATTGGG AACTCTTGGTCTTCCAATCTGGTTCACTGAGCTTGATGCGTCTTCCACTAATGAATATGTTAGAGGTGATGATCTTGAAG TTATGATGAGGGAAGCTTTTGCACACCCTGCTGTGGATGGTGTAATGCTATGGGGGTTTTGGGAATTGTTTATGAGCAGG GAAAATTCACACTTAGTGAATGCTGAAGGTGAGATCAATGAAGCTGGGAAAAGGTTCCTTGCTCTTAAACAAGAGTGGTT GTGTCACACACATGGACATATTGATGAGCAAGGAGAATTCAGTTTTAGAGGATTTAGTGGGACATATGAAGTGGAAGTTG TGACATTAGGAGAGAAAATTTGTAAGACATTTGTTGTTGACAAGGGTGAATCGTCAATTGTTGTGTCAATTGAATTATAA
CDS sequence (LotjaGi1g1v0364800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGGTGGTAAAATACTTCCAAAAGTTGGGAAATTCTTTGTAGCTGCAACAGAACGCACGCAAACCTGGAATGGAAT TCAGCAGGAGATCACCGGAAGAGTGCAGCGCAAGCTAGCATATGAGATCACTGCTTTGGTTAGGATATTTGGGAACAATG TCACTACTTCTGATGTGCGAGCTACATTGTGGGTTCAAACACCGGATCTTCGAGAGCAGTACATAGGCATTGCCAATGTG CAGGCAACAGATAAAGATTGGGTTGAAATGCAGGGAAAGTTCCTTCTCAATGGCTCCCCTTCAAAAGTTGTTCTTTATTT AGAAGGTCCCCCACCAGGAATTGACATTCTTCTCAATACTTTGGTTGTAAAGCATGCAGCTAAAACACCACCTTCATCGC CCCCAGATTTTGAGAATGCTGCTTTTGGTGCTAACATAATTGAGAACAGTGATCTCGCTGATGGCACCAATGGCTGGTTT CCCCTTGGTAACTGCACTTTGAGTGTTGCAACTGGTTCGCCTCGTATAATTCCACCAATGGCAAGAGACTCTCTTGGCCC CCATGAGTCCTTAAGTGGACGCTACATCCTTGTAACCAACCGCACACAAACATGGATGGGTCCTGCTCAAATGATCACTG AGAAGTTGAAACTCTTCTTAACTTATCAAGTTTCTGCTTGGGTCAGGATAAGCTCAGGATCAAGTGGGCCTCAAAATGTG GGTATTTCCCTCAGTGTTGACAACCAGTGGGTGAATGGAGGACAAACTGAGGTTGCTGATAGCAGGTGGCATGAAATTGG TGGGTCCTTTAGACTTGAAAAACAACCATCTAAGGTTATGGTTTATATTCAAGGTCCTGCTTCTGGTGTTGATCTAATGG TTGCTGGACTTCAAATTTTTCCTGTGAATAGAGAGGCAAGGTTTGCATACTTAAGGAGGCAAACAGACAAGATTCGTAAG CGTGATGTTACTCTAAAATTCTCCGGGCTAGACTCTTGTGGGTACACCTTTGTGAAAGTTAGACAAACACAGAACGATTT TCCAATTGGATCATGCATCAACAGAACAAATATTGACAATGAAGACTTCGTTGACTTCTTTGTGAAACATTTCAACTGGG CTGTGTTTGGCAACGAGTTGAAGTGGTATTGGACTGAACCACAACAAGGAAAATTAAACTACAAGGATGCTGATGACATG TTAGACTTGTGTCAGAAGCACAACATAGAAACTCGTGGTCATTGCATATTCTGGGAAGTGGATGGAACTGTTCAACCATG GATCAAAGCACTGAATAAAAATGATTTGATGATAGCTGTCCAAAATCGCTTAACTAGCTTATTGAATCGCTACAAAGGAA AGTTCAGACACTATGATGTCAACAATGAGATGTTGCATGGTTCATTTTATCAGGATAGACTAGGCAAAGATATCAGAGCA ATCATGTTCAAAACTGCACACCAATTAGATCCATCTGCTACCCTTTTTTTGAATGATTACCATGTTGAAGATGGAGGTGA CACAAGATCATCTCCAGAAAAGTACATTCAACAAACAATTGGTCTGCAAGATCAAGGTGCCCCAGTTGGTGGAATTGGAA TTCAAGGTCACATAGATAGTCCTGTTGGGCCTATTGTTTGTTCTGCACTTGACAAATTGGGAACTCTTGGTCTTCCAATC TGGTTCACTGAGCTTGATGCGTCTTCCACTAATGAATATGTTAGAGGTGATGATCTTGAAGTTATGATGAGGGAAGCTTT TGCACACCCTGCTGTGGATGGTGTAATGCTATGGGGGTTTTGGGAATTGTTTATGAGCAGGGAAAATTCACACTTAGTGA ATGCTGAAGGTGAGATCAATGAAGCTGGGAAAAGGTTCCTTGCTCTTAAACAAGAGTGGTTGTGTCACACACATGGACAT ATTGATGAGCAAGGAGAATTCAGTTTTAGAGGATTTAGTGGGACATATGAAGTGGAAGTTGTGACATTAGGAGAGAAAAT TTGTAAGACATTTGTTGTTGACAAGGGTGAATCGTCAATTGTTGTGTCAATTGAATTATAA
Protein sequence (LotjaGi1g1v0364800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGGGKILPKVGKFFVAATERTQTWNGIQQEITGRVQRKLAYEITALVRIFGNNVTTSDVRATLWVQTPDLREQYIGIANV QATDKDWVEMQGKFLLNGSPSKVVLYLEGPPPGIDILLNTLVVKHAAKTPPSSPPDFENAAFGANIIENSDLADGTNGWF PLGNCTLSVATGSPRIIPPMARDSLGPHESLSGRYILVTNRTQTWMGPAQMITEKLKLFLTYQVSAWVRISSGSSGPQNV GISLSVDNQWVNGGQTEVADSRWHEIGGSFRLEKQPSKVMVYIQGPASGVDLMVAGLQIFPVNREARFAYLRRQTDKIRK RDVTLKFSGLDSCGYTFVKVRQTQNDFPIGSCINRTNIDNEDFVDFFVKHFNWAVFGNELKWYWTEPQQGKLNYKDADDM LDLCQKHNIETRGHCIFWEVDGTVQPWIKALNKNDLMIAVQNRLTSLLNRYKGKFRHYDVNNEMLHGSFYQDRLGKDIRA IMFKTAHQLDPSATLFLNDYHVEDGGDTRSSPEKYIQQTIGLQDQGAPVGGIGIQGHIDSPVGPIVCSALDKLGTLGLPI WFTELDASSTNEYVRGDDLEVMMREAFAHPAVDGVMLWGFWELFMSRENSHLVNAEGEINEAGKRFLALKQEWLCHTHGH IDEQGEFSFRGFSGTYEVEVVTLGEKICKTFVVDKGESSIVVSIEL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 8 | 126 | 119 | 1.0E-21 | ||
| Pfam | 11 | 110 | 100 | 1.8E-12 | ||
| PANTHER | 11 | 686 | 676 | 0.0 | – | |
| PANTHER | 11 | 686 | 676 | 0.0 | – | |
| SUPERFAMILY | 11 | 126 | 116 | 4.08E-26 | ||
| Gene3D | 139 | 300 | 162 | 1.2E-33 | ||
| SUPERFAMILY | 143 | 303 | 161 | 2.42E-37 | ||
| Pfam | 144 | 288 | 145 | 5.3E-19 | ||
| ProSiteProfiles | 334 | 629 | 296 | 33.838 | ||
| Gene3D | 336 | 636 | 301 | 1.7E-72 | – | |
| SUPERFAMILY | 338 | 636 | 299 | 8.19E-93 | ||
| Pfam | 343 | 600 | 258 | 2.1E-42 | ||
| SMART | 380 | 630 | 251 | 1.6E-9 | ||
| PRINTS | 411 | 423 | 13 | 4.7E-5 | ||
| PRINTS | 493 | 504 | 12 | 4.7E-5 | ||
| PRINTS | 525 | 537 | 13 | 4.7E-5 | ||
| Coils | 612 | 632 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
| Molecular function | Hydrolase activity, acting on glycosyl bonds | Catalysis of the hydrolysis of any glycosyl bond. |
Expression pattern of LotjaGi1g1v0364800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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