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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0365600 |
| Transcript ID | LotjaGi1g1v0365600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | carboxyl-terminal peptidase (DUF239); TAIR: AT5G25950.1 AslB, putative (DUF239); Swiss-Prot: sp|Q6FUA5|YSH1_CANGA Endoribonuclease YSH1; TrEMBL-Plants: tr|I3SZ69|I3SZ69_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0365600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:84344336..84347938) extracted from Lotus japonicus Gifu genome v1.2.
TGAGAATTGAATGGTATTGAGAATGAAAAAATTTAAAGTTGTAATTTTGTTTATATGGGCGTTGTTTGCCTCCTGTACCC AGGTAGATTTCAAAGTTGTGGCAACAGCATCATCTCCTACAAAAAGAGAAATAAAAGCTAAATTGAAGCTCCTCAACAAG CCTTCCGTAAAAACCATCAAGGTATTCAATTCATTACTCCTTTTTATATTTTTTATATTTCAAAAACAAATATATATATA TATATATATATATATAAAAACTAAGATTGAATGTATTTTCAGATGAGGATAAAATTTTAAGTATTTAATAAAATATAGAA GACAAAACAATGTACTATTGTAAGTGTAATTTGCACATGTTGATTTTAAAAAAAAAAATTGTACATGTTTGATTTTTCTT AAAAGTATATTGAGTTTGAATCTTGTGTATGAAAAAAAAAATTGAATGTGAAAAATCCACACAAAAGTATATATCTATGG ATTTATCTAGTTTGAGAAAATACTTTATACTTTGATTAATAATTTTAAAGTCAATAATACGAATCAATCAAGTTTTCAAA TAACTCAGTAAATAATTCAATTGTCTTCCTAATTATTAAAATTTGTACACTATTTGATTGACTTTTTGCAGAACTTTTGA AAAATATATTGCACTAATGTCTTTATATTTAATGTAAAATATTCAACGAAATAATATTTAATTAATATTTTGAAAATATA AATCACATTTATTTTCTAAAAATTAAAAATATTATTGAAAAAATTGATTATAAGGATTTAAATTTTGTATTTGATTGTGA AATTTCAATTGTATTTTTATAGAGTGAAGATGGAGATATAATTGACTGTGTCGACATATATAAACAATCTGCTTTTGACC ATCCTGCACTAAAAGACCACAAATTACAGGTACGTGTTGTTAAATATATATATATATATATATATATATATATATATCTC GATTGTAGTAGCTTGTGCCTATATTTGTATATTATTTCATTTGTTAGCATATGCAAGCTCATGAATCATATTATACATGA ATTATTTATTTTTAAAATATAAGGATTAAAGAAATTATGGAAGTAGCTCAAGTGGTTAAATGTGTGCTTTGCTACTTATA AGTTTTGAGTTCAAATCCTCCCCACCTTCAGTTCTCGAAAAAAAAAATATAAGGATTAAAGTAAAACTTTAAGCACTTTG ACTTAACTTAATTCAACTTTTGACCAGATGAAGAAATCTATATGAGTGAACATTCTCTAAACTTATCTTACCTATTATGT AATTCTATCATAGGTGAAATAATTATATTTAAGATAAATAATTTAAAATTCATAAATGATACCATTGATTGAGCTATGAA GGATTATAATTTCATGGGATATGGGGTAAAGTTAAACAACATCATAAAAAAAACCATTGTTATTAAACGTACGAATTTGC TTGTTTGGAAGATTTCTTTAGTATTTGAGTTTATTTATGGCCTGAAATAACTCGAAGTATGGGTCTTTTGGTGAGTGGGA AAAAATATGAGTCTAACTTATTGATATGTTTCACAAAATAACACATGGATATTTTTTATTTTCCTTAGCGGGCAATAGTT GTAATTTACTAATTTTGCAATTTCCTCTTATCCTTCTCAAACTAAAAAATTGTGCATCATTGACTAATGGAATATTATAT ATCATGCAGAAAATTCCCGATTTTCTTATAGAATCCAAGAACTCAAGCAATTTGCAAACAAAGTCCATTGTGTTCCAAAC ATGGCAGAAAAATGGAAGTTGTCCAGAAGGAACAATTCCCATTCGCAGGATTCGAACGGAGGATTTATCAAGGGCAGCTT CCCTGAATCTTTTCGGACGAAAACCCATAATGCATTTCATGAAATCAACAAACAACACAAACTCTAATTACCCCATAGTC AATGGCTCATTTGCATATGTTCCAGAAAACCGCACGGTATATTTATATAAACTAGTATATTAGCTTTTGCAATGCAAACA AAAATAATTTTTGAAATAGTTAAATTGCAACATGGTATATCATTATAATTTAATATAGTTAACTAATTGTGACATGACAT GCAGAAAGCATTTCTTGTGACAGTGGGATACAGTTATATTGGTGCAGAAGCTGAAATTAACGTTTGGAATCCAAGGGTTG ATCTTCCAGATGATTTCACCACTGCTCAAATTTGGCTTAAGACTGGAAATGGTCCTCAATATTTTGAAAGCATTGAATCA GGCTGGCAGGTTACTTCCCCCGCATGACACTCACTTTTTTTTTGTTCTAAAAAAAATTGTTCGAGTTAAATAAGATCTTC AGAAATTGTAAAACTCTCATACCAAGCACTCACTACTTACTTACAATTACAAATTAACTATTTACCTAAATTTACGTATA TAACATTATAAATTAACTAATGTGAGACAATATAAATGAACATGCACAATTGACTAATTCTCTCTCTATATATACTATGC TTCAGGTAAATCCAAAGTTGTATGGTGACAGGTCCACTCGATTTTTTGCTCATTGGACTGTAAGTACTTGATTATTTATT GAAAAATTGGTCATTTTTTTGATGGTGTGACTTCTTAAATAATATTAGTTGCTTAATTTGCTACCTCAGTATTTAGAGGA GGAACTTAAATTAACATTAATTTTAATTTTCTGCTTCTTGATTTTGTGGTGCAGACAGATTCATACAAGTCAACAGGTTG TTTTGATGTTGTTTGTCCTGGGTTTGTGCAAGTAGGCCAAGTAGTTCTTGGAGGTGCAATAACACCTATTTCATACTCAT ACCACACACAAAAAGAAATCCCCGTTGGAATGTATTGGGTAATGATCACATGTGTTTTTTATACTCAAATGCTACTAAAT TATTTTAAACACACATAAAACATCTTTAGCTAGATTACTTCAAGGAAAATACTCTTTCTTTTGCCACCATACATTTGCAC ACATTCATGCACATGTGAAAAAGATATTTTTTAATAAATATATATGGTGCGCTTGGGTAAACAACTTAAGTAAGTGTTAT GACAATAAGCATTTACCACATAAATAGAGGGGAGAAAAATGCAATATTTATAAATTTCAACGGGTAACATAATTTATTTA TTAATTTATCACAAATATATGGTAACTTGGTAATAACTAATGTATTACATGGTTTTTTTTTGGCATGGTTCAGGATAACT CAGGGAATTGGTGGCTTAAAGTGAACAATCATATTGTAGGTTATTGGCCTGCAAAATTATTAAGTGGGTTGAGTCGCAGT GCCAAATCAGTTGAGTGGGGAGGACAAGTGTACAGTCCAATGTTGAAGAAAAATACACCTCACACGAGGACAGCTATGGG AAGTGGAGAGGCTGCAGATGGTCGTTGGGGGAACGCATGCTACATGCGCAATCTAAGAATTAAAGATTACTCCCGAAATC TTAAGTACCCTGAATATGTAAGCACAAGGGCTGAAGAACCATATTGCTACAATGTCATCAATGAGGCCAAATATGGGCAG GAACCTATCCTCTACTTTGGAGGGCCCGGATTTAAACCTCCCTATTGCCCTTGAATTTCTATGCAAAAATGTTATGAACG AAT
CDS sequence (LotjaGi1g1v0365600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTATTGAGAATGAAAAAATTTAAAGTTGTAATTTTGTTTATATGGGCGTTGTTTGCCTCCTGTACCCAGGTAGATTT CAAAGTTGTGGCAACAGCATCATCTCCTACAAAAAGAGAAATAAAAGCTAAATTGAAGCTCCTCAACAAGCCTTCCGTAA AAACCATCAAGAGTGAAGATGGAGATATAATTGACTGTGTCGACATATATAAACAATCTGCTTTTGACCATCCTGCACTA AAAGACCACAAATTACAGAAAATTCCCGATTTTCTTATAGAATCCAAGAACTCAAGCAATTTGCAAACAAAGTCCATTGT GTTCCAAACATGGCAGAAAAATGGAAGTTGTCCAGAAGGAACAATTCCCATTCGCAGGATTCGAACGGAGGATTTATCAA GGGCAGCTTCCCTGAATCTTTTCGGACGAAAACCCATAATGCATTTCATGAAATCAACAAACAACACAAACTCTAATTAC CCCATAGTCAATGGCTCATTTGCATATGTTCCAGAAAACCGCACGAAAGCATTTCTTGTGACAGTGGGATACAGTTATAT TGGTGCAGAAGCTGAAATTAACGTTTGGAATCCAAGGGTTGATCTTCCAGATGATTTCACCACTGCTCAAATTTGGCTTA AGACTGGAAATGGTCCTCAATATTTTGAAAGCATTGAATCAGGCTGGCAGGTAAATCCAAAGTTGTATGGTGACAGGTCC ACTCGATTTTTTGCTCATTGGACTACAGATTCATACAAGTCAACAGGTTGTTTTGATGTTGTTTGTCCTGGGTTTGTGCA AGTAGGCCAAGTAGTTCTTGGAGGTGCAATAACACCTATTTCATACTCATACCACACACAAAAAGAAATCCCCGTTGGAA TGTATTGGGATAACTCAGGGAATTGGTGGCTTAAAGTGAACAATCATATTGTAGGTTATTGGCCTGCAAAATTATTAAGT GGGTTGAGTCGCAGTGCCAAATCAGTTGAGTGGGGAGGACAAGTGTACAGTCCAATGTTGAAGAAAAATACACCTCACAC GAGGACAGCTATGGGAAGTGGAGAGGCTGCAGATGGTCGTTGGGGGAACGCATGCTACATGCGCAATCTAAGAATTAAAG ATTACTCCCGAAATCTTAAGTACCCTGAATATGTAAGCACAAGGGCTGAAGAACCATATTGCTACAATGTCATCAATGAG GCCAAATATGGGCAGGAACCTATCCTCTACTTTGGAGGGCCCGGATTTAAACCTCCCTATTGCCCTTGA
Protein sequence (LotjaGi1g1v0365600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLRMKKFKVVILFIWALFASCTQVDFKVVATASSPTKREIKAKLKLLNKPSVKTIKSEDGDIIDCVDIYKQSAFDHPAL KDHKLQKIPDFLIESKNSSNLQTKSIVFQTWQKNGSCPEGTIPIRRIRTEDLSRAASLNLFGRKPIMHFMKSTNNTNSNY PIVNGSFAYVPENRTKAFLVTVGYSYIGAEAEINVWNPRVDLPDDFTTAQIWLKTGNGPQYFESIESGWQVNPKLYGDRS TRFFAHWTTDSYKSTGCFDVVCPGFVQVGQVVLGGAITPISYSYHTQKEIPVGMYWDNSGNWWLKVNNHIVGYWPAKLLS GLSRSAKSVEWGGQVYSPMLKKNTPHTRTAMGSGEAADGRWGNACYMRNLRIKDYSRNLKYPEYVSTRAEEPYCYNVINE AKYGQEPILYFGGPGFKPPYCP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 25 | 25 | - | – | |
| ProSiteProfiles | 1 | 22 | 22 | 7.0 | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 9 | 9 | - | – | |
| PANTHER | 9 | 422 | 414 | 3.2E-133 | – | |
| PANTHER | 9 | 422 | 414 | 3.2E-133 | – | |
| Phobius | 10 | 22 | 13 | - | – | |
| Phobius | 23 | 27 | 5 | - | – | |
| Phobius | 28 | 422 | 395 | - | – | |
| Pfam | 55 | 147 | 93 | 1.3E-33 | ||
| Pfam | 193 | 414 | 222 | 1.1E-65 | ||
| Gene3D | 200 | 269 | 70 | 3.5E-8 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0365600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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