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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0366800 |
| Transcript ID | LotjaGi1g1v0366800.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | zinc transporter; TAIR: AT1G10970.1 zinc transporter; Swiss-Prot: sp|Q8LE59|IRT3_ARATH Fe(2+) transport protein 3, chloroplastic; TrEMBL-Plants: tr|G7J7M9|G7J7M9_MEDTR ZIP zinc/iron transport family protein; Found in the gene: LotjaGi1g1v0366800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:84471008..84473730) extracted from Lotus japonicus Gifu genome v1.2.
AAAACTCAACTTAAGCATCCATCTTTCTATTCTCTCACTTCCTCTGTCATTCAAATGTCGACACTCTTCTTCTCTAACAC TCCATGATGCCATTCTTTTCCCAATCTCAATCTCAAACACTGTCTCTCCATAGTTCTTCCATTTTCTTATTTATATTACT TCTTATCAAATTCAGTTTTCTCCACATTGCTCATTCCAATAACAACTCTGTTATTCTCTTCATCCCATGTTTTTTATTGA GGTTTGTTATTGTTCTCACTTTCCCCTGTTTTGCTTTGCTCTTTATTCTGCAACTTTCTCTGTATTCAAGAAGAATTATT ATAGCTTTCTTCTCCTCTCTTTTTTCTCAGGATTCCTGGGAACTGCTTCAGCTTCTCATTGGAAAAACAGGTAATTCTTT TCTTGCAACCAAACTGCTTCTTCTTCTTCTTCCCCTGTTTTCCTCTGTTTTCCCCTGTTTTGCTCTGTTTTTTTCACCAA TTTTGAATGTAACAAGTTATCAAATTCAATTCCCCTTTTCTCACCCACCCAGATTGCAAGTTCTAATCTTTACAACTCGC AATCATAGGTGAATCAATTTTTTTCAAAAGGGGTTTCTTCAATTCTTCTAAACTCTTGAGCCGGTGTTGCTGTTTTTCCC AAATTAGTGAAAGAACCGATTTCTCATCATTCAACGATGAACTCCACCGCTTGTGGAGGCGGCGGCGCCGGGGAAGAACT CTGTCGAGATGACTCAGCAGCGTTTGTTCTCAAGTTCGTCGCCATGGCGTCCATTCTCCTTGCCGGCATGGCCGGAATTG CCATCCCTCTCATCGGGAAACACCGCCGCTTCCTCCGCACCGATGGGAACCTCTTCGTCGCCGCCAAGGCCTTCGCGGCG GGGGTGATTCTTGCTACCGGGTTCGTCCACATGCTCTCCGACGCGACGAAAGCGCTCAACAGTCCTTGCTTGCCGGAGTT TCCATGGTCCAAGTTTCCCTTCACCGGTTTCTTTGCTATGGTGGCGGCGCTATTCACACTCCTCCTTGACTTCGTCGGAA CTCAGTACTACGAGCGGAAGCAGGGGCTGAACCGTGTCCCCGACGAGCAAACGCGGGTCGGGTCGTCGGAGCCTGAAACC GTGAAGGTGTTTGGGGAAGAAGAGAGCGGTGGAATGCACATTGTGGGGATGCATGCACACGCGGCGCATCATAGACACAA CCACCCTCATGGACAGGACGCGTGTCACGGCATTGGCGGCGTCAAGGAGCACGGCCATGCTCACGCTCACGGCCATGCTC TCATAAGTGTTGCTGATGACGGCGAAGAAATTGATGTCAGACACGTTGTTGTTTCACAGGTATCTATCTGTTTGTTATTT ATTAGTTTTCATGGTTTTGCTTGATACATCATTGCCAATCAAACATGTTTAAGCTCAACTGATATTCGAACACTGCATTT AGATTTATCACTTTTTCTAAGATGAAGTGTGTGTTTGTTTATCCATTGCCTTAGATGTGAATTTGAGTTTTCTCAATGCA ACAACTTTGCATGGTTGGAAAGATTGGCTTGAAAGCCAAATATGTCAGTTGAATAATGTGTTTGTGACTAGACAGGTTAA TGTGCTTTCAACTGGAAATCTAACACAGCCAAATATGTCAGTTTAACTGGCTTTCAACTAAGAACCAACACTTCCAAGTG ATTGAGATGAAAGTTTCTTTATGCTCCACTACTATTCAAAGACACATTTAGATGTACCATTTTTTCTAAGAAGAAGTATG TGTTTGTTTATAGACTGAATCAGATGCGAATGTGTTTATTCTCAATCAAAAACTTTGCTCAGTAAGAAAATTTGTCTTGT AATTGAATCCAAATATACTCAAAGGATGCTATGTACTATGTAGTATTGACAACTGTGCTTTGTGAAGATGACAATGACAT GTTAAATGCTTGTGTTTTTCAGGTCTTGGAGCTTGGGATTGTATCACATTCAGTGATAATTGGGTTGTCTCTGGGAGTTT CACAGAGTCCTTGTACCATAAGGCCTCTGATTGCTGCACTATCTTTCCATCAGTTCTTTGAAGGGTTTGCACTTGGAGGC TGCATTTCTCAGGCACAGTTCAAGACTTCATCAGCAACAATCATGGCTTGTTTCTTTGCACTGACTACCCCGGTGGGTAT AGGCATTGGAACTGGTATTGCTTCAGTGTATAACCCTTACAGCGCTGGCGCCCTTGTAGCAGAAGGGATTTTGGACTCGT TGTCAGCAGGGATTTTAGTGTACATGGCTTTAGTGGACTTGATAGCTGCTGATTTTCTCAGCAAAAGAATGAGTTGTAAT TTTAGGCTGCAGATAGTTTCTTATTGCATGCTTTTCCTTGGTGCTGGATTAATGTCCTCGCTTGCAATATGGGCATGAAA ATCGTCTCAATGTAGTTGTAACTGTGTTGTTCAATTTTGATTTATATCTTTATATTTCTTTCTTCAATGCACATTGTATA AACTTCCATTCCTGATGAAGCCTCCTCCAATGCTAGAATTGCAATTAGAGTTCATACCTTGAAAACTAACATCAAGGCTA GACCATTTTTATCTATGTATGCTGATCTGGTTGATGGTATATCTTGTATAAGCAGTTGTCATTGAAATCAAGCTTGTATT GGGGATGTCTTTTGGGAGATAGACATAAAAACTTAACATGATAAAGCATGAGAAAATTTTCACATGAGAGGATCTTCTTC CCG
CDS sequence (LotjaGi1g1v0366800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACTCCACCGCTTGTGGAGGCGGCGGCGCCGGGGAAGAACTCTGTCGAGATGACTCAGCAGCGTTTGTTCTCAAGTT CGTCGCCATGGCGTCCATTCTCCTTGCCGGCATGGCCGGAATTGCCATCCCTCTCATCGGGAAACACCGCCGCTTCCTCC GCACCGATGGGAACCTCTTCGTCGCCGCCAAGGCCTTCGCGGCGGGGGTGATTCTTGCTACCGGGTTCGTCCACATGCTC TCCGACGCGACGAAAGCGCTCAACAGTCCTTGCTTGCCGGAGTTTCCATGGTCCAAGTTTCCCTTCACCGGTTTCTTTGC TATGGTGGCGGCGCTATTCACACTCCTCCTTGACTTCGTCGGAACTCAGTACTACGAGCGGAAGCAGGGGCTGAACCGTG TCCCCGACGAGCAAACGCGGGTCGGGTCGTCGGAGCCTGAAACCGTGAAGGTGTTTGGGGAAGAAGAGAGCGGTGGAATG CACATTGTGGGGATGCATGCACACGCGGCGCATCATAGACACAACCACCCTCATGGACAGGACGCGTGTCACGGCATTGG CGGCGTCAAGGAGCACGGCCATGCTCACGCTCACGGCCATGCTCTCATAAGTGTTGCTGATGACGGCGAAGAAATTGATG TCAGACACGTTGTTGTTTCACAGGTCTTGGAGCTTGGGATTGTATCACATTCAGTGATAATTGGGTTGTCTCTGGGAGTT TCACAGAGTCCTTGTACCATAAGGCCTCTGATTGCTGCACTATCTTTCCATCAGTTCTTTGAAGGGTTTGCACTTGGAGG CTGCATTTCTCAGGCACAGTTCAAGACTTCATCAGCAACAATCATGGCTTGTTTCTTTGCACTGACTACCCCGGTGGGTA TAGGCATTGGAACTGGTATTGCTTCAGTGTATAACCCTTACAGCGCTGGCGCCCTTGTAGCAGAAGGGATTTTGGACTCG TTGTCAGCAGGGATTTTAGTGTACATGGCTTTAGTGGACTTGATAGCTGCTGATTTTCTCAGCAAAAGAATGAGTTGTAA TTTTAGGCTGCAGATAGTTTCTTATTGCATGCTTTTCCTTGGTGCTGGATTAATGTCCTCGCTTGCAATATGGGCATGA
Protein sequence (LotjaGi1g1v0366800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNSTACGGGGAGEELCRDDSAAFVLKFVAMASILLAGMAGIAIPLIGKHRRFLRTDGNLFVAAKAFAAGVILATGFVHML SDATKALNSPCLPEFPWSKFPFTGFFAMVAALFTLLLDFVGTQYYERKQGLNRVPDEQTRVGSSEPETVKVFGEEESGGM HIVGMHAHAAHHRHNHPHGQDACHGIGGVKEHGHAHAHGHALISVADDGEEIDVRHVVVSQVLELGIVSHSVIIGLSLGV SQSPCTIRPLIAALSFHQFFEGFALGGCISQAQFKTSSATIMACFFALTTPVGIGIGTGIASVYNPYSAGALVAEGILDS LSAGILVYMALVDLIAADFLSKRMSCNFRLQIVSYCMLFLGAGLMSSLAIWA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 26 | 26 | - | – | |
| PANTHER | 5 | 372 | 368 | 1.9E-213 | – | |
| PANTHER | 5 | 372 | 368 | 1.9E-213 | – | |
| TIGRFAM | 13 | 372 | 360 | 1.9E-135 | ||
| Pfam | 24 | 369 | 346 | 1.0E-77 | ||
| Phobius | 27 | 47 | 21 | - | – | |
| TMHMM | 27 | 46 | 20 | - | – | |
| Phobius | 48 | 58 | 11 | - | – | |
| TMHMM | 58 | 80 | 23 | - | – | |
| Phobius | 59 | 80 | 22 | - | – | |
| Phobius | 81 | 99 | 19 | - | – | |
| Phobius | 100 | 120 | 21 | - | – | |
| TMHMM | 100 | 122 | 23 | - | – | |
| Phobius | 121 | 278 | 158 | - | – | |
| Phobius | 279 | 301 | 23 | - | – | |
| TMHMM | 281 | 303 | 23 | - | – | |
| Phobius | 302 | 320 | 19 | - | – | |
| TMHMM | 318 | 340 | 23 | - | – | |
| Phobius | 321 | 340 | 20 | - | – | |
| Phobius | 341 | 351 | 11 | - | – | |
| TMHMM | 352 | 371 | 20 | - | – | |
| Phobius | 352 | 371 | 20 | - | – | |
| Phobius | 372 | 372 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion transmembrane transporter activity | Enables the transfer of zinc (Zn) ions from one side of a membrane to the other. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion transmembrane transporter activity | Enables the transfer of metal ions from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. | ||
| Biological process | Zinc ion transmembrane transport | A process in which a zinc II ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. |
Expression pattern of LotjaGi1g1v0366800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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