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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0366800 |
| Transcript ID | LotjaGi1g1v0366800.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | zinc transporter; TAIR: AT1G60960.1 iron regulated transporter 3; Swiss-Prot: sp|Q8LE59|IRT3_ARATH Fe(2+) transport protein 3, chloroplastic; TrEMBL-Plants: tr|G7J7M9|G7J7M9_MEDTR ZIP zinc/iron transport family protein; Found in the gene: LotjaGi1g1v0366800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:84471333..84473314) extracted from Lotus japonicus Gifu genome v1.2.
CTTCTTCTTCTTCTTCCCCTGTTTTCCTCTGTTTTCCCCTGTTTTGCTCTGTTTTTTTCACCAATTTTGAATGTAACAAG TTATCAAATTCAATTCCCCTTTTCTCACCCACCCAGATTGCAAGTTCTAATCTTTACAACTCGCAATCATAGGTGAATCA ATTTTTTTCAAAAGGGGTTTCTTCAATTCTTCTAAACTCTTGAGCCGGTGTTGCTGTTTTTCCCAAATTAGTGAAAGAAC CGATTTCTCATCATTCAACGATGAACTCCACCGCTTGTGGAGGCGGCGGCGCCGGGGAAGAACTCTGTCGAGATGACTCA GCAGCGTTTGTTCTCAAGTTCGTCGCCATGGCGTCCATTCTCCTTGCCGGCATGGCCGGAATTGCCATCCCTCTCATCGG GAAACACCGCCGCTTCCTCCGCACCGATGGGAACCTCTTCGTCGCCGCCAAGGCCTTCGCGGCGGGGGTGATTCTTGCTA CCGGGTTCGTCCACATGCTCTCCGACGCGACGAAAGCGCTCAACAGTCCTTGCTTGCCGGAGTTTCCATGGTCCAAGTTT CCCTTCACCGGTTTCTTTGCTATGGTGGCGGCGCTATTCACACTCCTCCTTGACTTCGTCGGAACTCAGTACTACGAGCG GAAGCAGGGGCTGAACCGTGTCCCCGACGAGCAAACGCGGGTCGGGTCGTCGGAGCCTGAAACCGTGAAGGTGTTTGGGG AAGAAGAGAGCGGTGGAATGCACATTGTGGGGATGCATGCACACGCGGCGCATCATAGACACAACCACCCTCATGGACAG GACGCGTGTCACGGCATTGGCGGCGTCAAGGAGCACGGCCATGCTCACGCTCACGGCCATGCTCTCATAAGTGTTGCTGA TGACGGCGAAGAAATTGATGTCAGACACGTTGTTGTTTCACAGGTATCTATCTGTTTGTTATTTATTAGTTTTCATGGTT TTGCTTGATACATCATTGCCAATCAAACATGTTTAAGCTCAACTGATATTCGAACACTGCATTTAGATTTATCACTTTTT CTAAGATGAAGTGTGTGTTTGTTTATCCATTGCCTTAGATGTGAATTTGAGTTTTCTCAATGCAACAACTTTGCATGGTT GGAAAGATTGGCTTGAAAGCCAAATATGTCAGTTGAATAATGTGTTTGTGACTAGACAGGTTAATGTGCTTTCAACTGGA AATCTAACACAGCCAAATATGTCAGTTTAACTGGCTTTCAACTAAGAACCAACACTTCCAAGTGATTGAGATGAAAGTTT CTTTATGCTCCACTACTATTCAAAGACACATTTAGATGTACCATTTTTTCTAAGAAGAAGTATGTGTTTGTTTATAGACT GAATCAGATGCGAATGTGTTTATTCTCAATCAAAAACTTTGCTCAGTAAGAAAATTTGTCTTGTAATTGAATCCAAATAT ACTCAAAGGATGCTATGTACTATGTAGTATTGACAACTGTGCTTTGTGAAGATGACAATGACATGTTAAATGCTTGTGTT TTTCAGGTCTTGGAGCTTGGGATTGTATCACATTCAGTGATAATTGGGTTGTCTCTGGGAGTTTCACAGAGTCCTTGTAC CATAAGGCCTCTGATTGCTGCACTATCTTTCCATCAGTTCTTTGAAGGGTTTGCACTTGGAGGCTGCATTTCTCAGGCAC AGTTCAAGACTTCATCAGCAACAATCATGGCTTGTTTCTTTGCACTGACTACCCCGGTGGGTATAGGCATTGGAACTGGT ATTGCTTCAGTGTATAACCCTTACAGCGCTGGCGCCCTTGTAGCAGAAGGGATTTTGGACTCGTTGTCAGCAGGGATTTT AGTGTACATGGCTTTAGTGGACTTGATAGCTGCTGATTTTCTCAGCAAAAGAATGAGTTGTAATTTTAGGCTGCAGATAG TTTCTTATTGCATGCTTTTCCTTGGTGCTGGATTAATGTCCTCGCTTGCAATATGGGCATGA
CDS sequence (LotjaGi1g1v0366800.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTCCATTCTCCTTGCCGGCATGGCCGGAATTGCCATCCCTCTCATCGGGAAACACCGCCGCTTCCTCCGCACCGA TGGGAACCTCTTCGTCGCCGCCAAGGCCTTCGCGGCGGGGGTGATTCTTGCTACCGGGTTCGTCCACATGCTCTCCGACG CGACGAAAGCGCTCAACAGTCCTTGCTTGCCGGAGTTTCCATGGTCCAAGTTTCCCTTCACCGGTTTCTTTGCTATGGTG GCGGCGCTATTCACACTCCTCCTTGACTTCGTCGGAACTCAGTACTACGAGCGGAAGCAGGGGCTGAACCGTGTCCCCGA CGAGCAAACGCGGGTCGGGTCGTCGGAGCCTGAAACCGTGAAGGTGTTTGGGGAAGAAGAGAGCGGTGGAATGCACATTG TGGGGATGCATGCACACGCGGCGCATCATAGACACAACCACCCTCATGGACAGGACGCGTGTCACGGCATTGGCGGCGTC AAGGAGCACGGCCATGCTCACGCTCACGGCCATGCTCTCATAAGTGTTGCTGATGACGGCGAAGAAATTGATGTCAGACA CGTTGTTGTTTCACAGGTCTTGGAGCTTGGGATTGTATCACATTCAGTGATAATTGGGTTGTCTCTGGGAGTTTCACAGA GTCCTTGTACCATAAGGCCTCTGATTGCTGCACTATCTTTCCATCAGTTCTTTGAAGGGTTTGCACTTGGAGGCTGCATT TCTCAGGCACAGTTCAAGACTTCATCAGCAACAATCATGGCTTGTTTCTTTGCACTGACTACCCCGGTGGGTATAGGCAT TGGAACTGGTATTGCTTCAGTGTATAACCCTTACAGCGCTGGCGCCCTTGTAGCAGAAGGGATTTTGGACTCGTTGTCAG CAGGGATTTTAGTGTACATGGCTTTAGTGGACTTGATAGCTGCTGATTTTCTCAGCAAAAGAATGAGTTGTAATTTTAGG CTGCAGATAGTTTCTTATTGCATGCTTTTCCTTGGTGCTGGATTAATGTCCTCGCTTGCAATATGGGCATGA
Protein sequence (LotjaGi1g1v0366800.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASILLAGMAGIAIPLIGKHRRFLRTDGNLFVAAKAFAAGVILATGFVHMLSDATKALNSPCLPEFPWSKFPFTGFFAMV AALFTLLLDFVGTQYYERKQGLNRVPDEQTRVGSSEPETVKVFGEEESGGMHIVGMHAHAAHHRHNHPHGQDACHGIGGV KEHGHAHAHGHALISVADDGEEIDVRHVVVSQVLELGIVSHSVIIGLSLGVSQSPCTIRPLIAALSFHQFFEGFALGGCI SQAQFKTSSATIMACFFALTTPVGIGIGTGIASVYNPYSAGALVAEGILDSLSAGILVYMALVDLIAADFLSKRMSCNFR LQIVSYCMLFLGAGLMSSLAIWA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 29 | 29 | - | – | |
| Pfam | 1 | 340 | 340 | 5.7E-76 | ||
| PANTHER | 1 | 343 | 343 | 4.9E-201 | – | |
| PANTHER | 1 | 343 | 343 | 4.9E-201 | – | |
| TIGRFAM | 2 | 343 | 342 | 4.1E-130 | ||
| TMHMM | 29 | 51 | 23 | - | – | |
| Phobius | 30 | 51 | 22 | - | – | |
| Phobius | 52 | 70 | 19 | - | – | |
| Phobius | 71 | 91 | 21 | - | – | |
| TMHMM | 71 | 93 | 23 | - | – | |
| Phobius | 92 | 249 | 158 | - | – | |
| Phobius | 250 | 272 | 23 | - | – | |
| TMHMM | 252 | 274 | 23 | - | – | |
| Phobius | 273 | 291 | 19 | - | – | |
| TMHMM | 289 | 311 | 23 | - | – | |
| Phobius | 292 | 311 | 20 | - | – | |
| Phobius | 312 | 322 | 11 | - | – | |
| TMHMM | 323 | 342 | 20 | - | – | |
| Phobius | 323 | 342 | 20 | - | – | |
| Phobius | 343 | 343 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion transmembrane transporter activity | Enables the transfer of zinc (Zn) ions from one side of a membrane to the other. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion transmembrane transporter activity | Enables the transfer of metal ions from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. | ||
| Biological process | Zinc ion transmembrane transport | A process in which a zinc II ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. |
Expression pattern of LotjaGi1g1v0366800.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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