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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0373600 |
| Transcript ID | LotjaGi1g1v0373600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin carboxyl-terminal hydrolase family protein; TAIR: AT2G24640.1 ubiquitin-specific protease 19; Swiss-Prot: sp|Q9SJA1|UBP19_ARATH Ubiquitin carboxyl-terminal hydrolase 19; TrEMBL-Plants: tr|A0A151TTH4|A0A151TTH4_CAJCA Ubiquitin carboxyl-terminal hydrolase 19; Found in the gene: LotjaGi1g1v0373600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:85189088..85195362) extracted from Lotus japonicus Gifu genome v1.2.
GTTAAATCCAAAGAAGAAAGAAAACCACCACACAGGAAATCACAAGGTTCCTTCCTTCTCCTCTGTTCCTCATCGTCCTC ATCACAAATCCAAACAACGATCGACAAATCGAGATTAACACAATCTCAACACACGTTCCTGTCTCTGTCACAAGCAAATC GAAAACCCTAATTTCTCTTGTGATGTTGGCAGATTGGATTTGGAGCAGTGAATCAACGTTCAGTTGAGGACGGATGAACA ACCCTAGGAGCAGGATCATCATAGATGCTTGTCTCTGGAGTATCATGGGATCTCAAGTGGCTACTGCAGTTTGTGATCTC CGCGTTTGTGGTGGTTCTTGGATTGCACACTCTCGTCAAGAATACGGCGTCAAAGTACTTTGAGGTCGACGCCAATTTCG ACGCCATGCCTGGCCTTCTCATGGATGATACCGTTTGTGTCCTCTGCCGCAAAAACGCCACCAAGAAGTGCTCTCGCTGC AAATCCGTTCGATACTGGTTGATTCCTCTTCCCATGTTTTCATTGATCCATGTTGCCCAATAATTATAGCGCTTGGCTTG ATTTTCAGTTGCTGGAAATTCTAGATTGAGTATCTGCTTGATAATCAATGTATTTGATTTTTTGAGTGATTTTTGAAAAG GGGGAAAAACTCACTTTGGCTTGGATTTATGGTTTTTTCAGCTCAGAAGCATGCCAACAGTTGCATTGGAAATCTGAACA TAAGATGAAATGCAAGGCTTTACAGAGCAACAGTGCAATAAGCTTGGCTAAAGCTTCCGCAGCTGTGAATAAAACCACAT CTTCAATTTCCCTGATCCCGCAATGTGGTCGTGGAACTTTCAGGCCTATCAAGCAGCCTAAAAATGTAATTCCTATTTAT TATCATATATTGATAATGTTATAGGGTGGTTTTTTCTTACTTGGTTGGATCTTATATATTTCTTTCTTGCATGCTGAAAT TGTATGTTTTTTTATTTTTTGTTTTCAGCCTCTCTTTCCTTATGATGAGTTTGTCAAATTGTTTAACTGGGACAAGCCAG GATTTCCTCCCTGTGGACTCTTGAATTGTGGAAACAGGTTTGCCTTTATTACAACCTTGCTTTAGCTTTATTACATCCTA TCATTGATATATTACAACAAGAGGTTTCGGTTGGAATTTAACATGGATTGCAAATTGTAAATCTGCAGCTGCTTTGCGAA TGTGGTTCTCCAATGTCTTTCATTCACAAAGCCACTTATTGCCTACTTGTTGGAGAAGGGTCACCGCAAAGAATGTAATG TCAGGAATTTGCTATTTGATCCTTGCTGGATCTTGAATATTCCTGATACTTATGTTTGTTAAATGTGGCTTTCCAGGCTG CCATAATGATTGGTGCTTTCTATGTGAATTTGAAATCCATGTTGAAAGGGCAAGGCTAAGTTCACAAGCGTTTTCTCCTA TGAATATTCTGTCTCGTTTGCCTAATATTTCGGGTACACTGGATTGTGGAAGACAAGAGGATGCTCATGAGTTCATGAGG TGTATTTACAATTGAAGCAATGTTATTTGACGTCCAATAGCAAATTGTTATTGACTATTTAAGAAGGATGTCTAGCTTAT AATAGTTTGGTATGACCCTAAAGGTTTTTCCCTCCAATATTTTTGATGCTGTTGTAGGTTTGCCATTGATACTATGCAAT CTATTTGCCTTGAGGAATTTGGTGGAGAAAAAGCTGTGCCTCCTAACCTTCAAGAAACAACCCTTATTCAACACATTTTT GGTGGACACCTTCAATCTGAGGTTAGACTTCTTCTAATCAGACTGAAATCATAGTTTACCTTATTGTCTCATTTGTGCAT AATCAAAATATAGAAACACATTGATATTGCTAGCTACATGGATCCTTGATGTGTTTATTCTTCTGATCTCATTAACTGAA AAAATCAATCCAGCCTAAGAGCTAAGAGTAATGGCTTTCAACTGTTTTCTTAATCAGGTTAGAGAATCACACAGTCTCGG TTCTTCATATCTCATTGTGCTTTCCAGATGAGAACAGGCCTTTTGTAATCTTTATATGTTCCATTTTTGTAGAAATTGGC CTAGAGTTACTCATTTCCTGATCCTTACTCTAGTTCAAAAGATAATTCTTAGCTCATTATTCAATTTTCAATTACTATAG CAATACAGAGGCTCTTCCTATCATCTGCATTATTTTTGTCTTTATTCTTTTCATCAAAGAGACGATGATAATCATCACAT AGACTGAGATAGATGTAGTTGTGCTGAAGCACCTAGTTTTATGGGGGGTGGGATGCATTTTATAGCGTAATTTAAAAGGA GTTATAAGGTGCTTAATTTTTCTTTTTAGCTGTTATTGATCAAGGTGACTGGAAAAAGCTAAAGTGTGACTGTGTAGAAG GATGATTTTCTGTTTTCTAGCTGGGTTCTGGGCTTCTGGCCATGGGTAAAATTTAAGCTGTCATGTGCTTGCCTTCTCTA GCATTCCAAGTTGTAGTTTCTACATGATTTAGCCTTTTATATATTCAGCATTTTGAATCTTTTCTTGAGTGGTTATTGAT TTTTGCATTTTTTTTTTCTTGGAAAAAATAGGTGATTTGCACAGAATGTGAGAAGAATTCAAATCAGTATGAAAATATGA TGGACTTGACAGTTGAAATTCATGGAGATGCTGCTTCCTTGGAGGAATGTCTAGACCAGTTTACTGTTAAGGAGTGGCTT CATGGGGATAATATGTATAAATGTGATGGGTAAGGTTGCTTAGAAAAATATTATATATACTGTGAATTAAATAATAATAT GCTTAAAGAAACGTTGCTTGGGAGTTGATCATTATTTGTATATTTTCATTTTTATGAGGATATTATAACTAATAGAACAT ATAGTCAATCATGTTCATGTTGACTAGGCTAGAATAATCAATTCCTGATTATTAGGCTAGTAAATAGTTTTTGGCCAGCT GAATTACCCTCTAACTGACTGTATCAATCAATAAATACAAGAGCAGGTATAACACACAATTTCTCTCGATAGTTCTTTCT TTCAACTACAAGAATAACTTAATAAATAAAATCTTAAATTATTTTAAAGCTGCTTTTTATCCTGATTATACCAGAGTTCT TGCAGAACATTGTTTCCTATTTAAACGTATCATTGTTGTTTTATTTTTCCCATTTTGGGATGTGTATTTAGATGATTGAG GCACAATATTTGGAAAGAGTTTTATAAATAGGAAATTTGTATGGTAAAAAGTTGGCTATCCTGAAATATACAATTGAAAG ATATGCTTTTACTGTGAGGCAGGTCATGTCTTAACAAAATTTTGCTTCTGTTTGCAGGTGCAAAGGTTATGTCAAGGCAT GGAAACGTCTCACAGTGAAACGGGCTCCAAATATTCTTACTATTGCCTTAAAAAGATTTCAGGTCTGAGTAATTTAGTCT CAGATCTTGAATGATGCTATAACTTGTTTAATTCTCACTTGTATGGTTTTTAGTTCCCCCTCTCAAAATGTGCTTCATGT GATGTAAATTGTACAGATATTACTATGACTATGTACCATATTCTGCTAGCACATTATATTTTATCCTACTATGCATAAAG GCTTGAAGACATGAAATGTTTCTTAAACTTTTCTTTGTCAATTTTCTCATCATTTTCTTTTTCTGTGGCATTGTGGAACT GCAGAGTGGGAGTTTTGGAAAACTTAACAAGAGAGTAACTTTCCCCGAGACTTTGGATCTTAGCCCTTACACAAGTGATG TTGGAGATGGATCTGACATCTATAAGCTTTATGCCGTTGTAGTCCATATTGATATGCTGAATGCTTCATTTTTTGGTCAT TACATCTGCTACATCAAGGATTTCCAAGGAAACTGGTATAGAATTGATGATTGGAAGGTAAAATTCTTAGTGTCTCGATA TAACTTTGAACAGCATTTTCCTTTTTGTTTAATGAACTTCGTTAATGTTTTTGAAATTTTAATATCCGTATTTGGTTTGT ATTATTTCTCAGGTTATGGGTGTGGAATTGGAGGAGGTGCTTTCTCAGGGCGCATACATGCTGCTGTATAGCAGGTATTC TTGTGATCATATGCTGAAGAAGCTACTGTTTTCTAAGACAACATTCCATATAATATATGCTCTCCCATATCTTTCATGTG GCGCCTTAATTATACTGTTCCCTTTGAACTTAGGCTAACCTGATTTTGTCATTTGTATTGGTATTTTCATTAAATAGGAT TTTTTAGGGTTGATTAGTAGTGAACTTAAATTTAGATCATTTTGTACATTTTAGCTGGTTCTTCTTCATCTTGCTCAGAA GTTGAACTTTATGTTAGTTGGTGTTGGTGGTGATTTAGGCCAGGACTGGGATGACAGTCTGATCATTTGAATGGTGGGCA AGGTTAACTGTTAGAACACTGGCCCATCCTTTTTGTGTGTGAAACCAAGAGAAGCTTAAGTTCTGTTCTTGTTAGTATTT GGCTTAATTTTTCGATGCCACTCTGACCTAGTCTTAATGTTAGTTTTTCATGGGAAACTGTCTGATGCCTTGATATATTA TTCTGTTCCTAGTTTTCTTATATGATTTAAGATTATGTATTTATTTTTGCATTCCCATGTGTAATGCATCTTCTTTACTT TCTGTGTAAGATCTTAAATCCTGGAAGCTTGTTTAAAGTAGTTTCCCTTTCCTACGCCTAGTGAGAATCCCGGTTATTTG AACTATCGTTATCTTAGGTTTGATTAAGAATGGTTTTAATAATCAAATTTAGGACAGATGCATTTAGCTTTTTTGGGAAC CAATATGTCAATTATTTCAACTTGAAGTGACGCTCTAATTACTTGATTTGCTTCTGGACAGGGTTAATGCACGACCCTCA GGACTTCAAAGTATTGAATCTTCAGAGGCGGCAGATATGAAAACATTCGAAGTGGGAGTGCAGCCTGGCTCTTCTAAACA AGCTGAGTGCTTTTCAGATACGAATACTGCGACTTACAGCAAAGGGTGTGAGGCTCTTCCATTTGGTATTAGTCCAGAGT TGAAGATTTCTGCCAGTGAATCTGTGTCTTTGACCGAAATGAGCTGTGGTGCAAAAAGCGAGCATTCTAATGATATGGAT GTTGAGGTTGCAAATGAAACTTCCTCTAGTGGCGTTGAATCATCTTATATCTGCAGTTCTCAAGCTGCCGAACATTGGGG GGATATAGATATTACCAGATCAAATCCATGCTCATCTGTTTTAGGAGAGATTTCAGGCTGTAAAAAAGAGCAAGATGATA GTGATATGGCTAAATCTGCTCCTTCTCTAGTTTTGCCAAATGGCTTCTCGGGCTTTGATAAGGATTCTTATGTTTCAGAG GATTATCAGAACTTAAGGGGAGATTCAGAACATGTAGATGCGATTGAGTGCAAGTCAATTGCAGCAAAAGACAATGTGAA GCTTAGCAATGGGTATGCCAGTTCAAACATACATGATATGCCTGTTGAAGATGGTGGTGCTGTATTTTCTGGGGTCGGTT CTTGTTCGAGTGAAACATCCTCAGCTGAGATGCATCAATTGAAGCGGAGATTGCCATTTTACAGTTCTGAAGCTGAGGAA GGAAATGAACTCAATAAAATGGAATCAGCAGGGAACAAGTTAATAAAGTAGGTGCAGCTATTTATATTATTTGTTCATAT CAATTTGATAACCCCATCATCAGAAAGAGAGATGGTGAGTTGGGAAATTTTTGTCTGGGGTTTCATTATTTGCTGGAACC TTGGACCTCATTGTAACATTGTTGATGGATTCTCTAATTTTATTTTAGTGATAGAATTAACTGCTTAACCCTAATATCTT TTTAACTTTGTCTATGACCAAAATAGACAATTGGTATTTAGTTATCCAAAATTCATCAGTTGTTAATTCTTATAATAACA TATTTAACACTTATTTTGGTTAGGAGTACATCCAGCAGAAAATGACGAAAGTTAATCCCTTCAGTTGCATAAAATATCTA ACAATCAAAACAGAAGATACAGTGAACTGTTATTTCAGTTTACTTTGAAAGAGACAAGTGTTAGTAAATACTGTGGGATG TTGAAAGAGACTAATAACTGAAATATGTGTCTGCTCTTGAGATGGCTTTAAAGTTAAAGCATGTATCAGTACAGAAAAAG CTATCAATACATCTACGCTTTTCAGGGTAACTACTGCTTTTTTATACACAATTAGCACTTTACAACCATTTGATACTTAG GGAAAGAAATGGTAGCAGCCGATTTCAACAGTGAC
CDS sequence (LotjaGi1g1v0373600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTGTCTCTGGAGTATCATGGGATCTCAAGTGGCTACTGCAGTTTGTGATCTCCGCGTTTGTGGTGGTTCTTGGATT GCACACTCTCGTCAAGAATACGGCGTCAAAGTACTTTGAGGTCGACGCCAATTTCGACGCCATGCCTGGCCTTCTCATGG ATGATACCGTTTGTGTCCTCTGCCGCAAAAACGCCACCAAGAAGTGCTCTCGCTGCAAATCCGTTCGATACTGCTCAGAA GCATGCCAACAGTTGCATTGGAAATCTGAACATAAGATGAAATGCAAGGCTTTACAGAGCAACAGTGCAATAAGCTTGGC TAAAGCTTCCGCAGCTGTGAATAAAACCACATCTTCAATTTCCCTGATCCCGCAATGTGGTCGTGGAACTTTCAGGCCTA TCAAGCAGCCTAAAAATCCTCTCTTTCCTTATGATGAGTTTGTCAAATTGTTTAACTGGGACAAGCCAGGATTTCCTCCC TGTGGACTCTTGAATTGTGGAAACAGCTGCTTTGCGAATGTGGTTCTCCAATGTCTTTCATTCACAAAGCCACTTATTGC CTACTTGTTGGAGAAGGGTCACCGCAAAGAATGCTGCCATAATGATTGGTGCTTTCTATGTGAATTTGAAATCCATGTTG AAAGGGCAAGGCTAAGTTCACAAGCGTTTTCTCCTATGAATATTCTGTCTCGTTTGCCTAATATTTCGGGTACACTGGAT TGTGGAAGACAAGAGGATGCTCATGAGTTCATGAGGTTTGCCATTGATACTATGCAATCTATTTGCCTTGAGGAATTTGG TGGAGAAAAAGCTGTGCCTCCTAACCTTCAAGAAACAACCCTTATTCAACACATTTTTGGTGGACACCTTCAATCTGAGG TGATTTGCACAGAATGTGAGAAGAATTCAAATCAGTATGAAAATATGATGGACTTGACAGTTGAAATTCATGGAGATGCT GCTTCCTTGGAGGAATGTCTAGACCAGTTTACTGTTAAGGAGTGGCTTCATGGGGATAATATGTATAAATGTGATGGGTG CAAAGGTTATGTCAAGGCATGGAAACGTCTCACAGTGAAACGGGCTCCAAATATTCTTACTATTGCCTTAAAAAGATTTC AGAGTGGGAGTTTTGGAAAACTTAACAAGAGAGTAACTTTCCCCGAGACTTTGGATCTTAGCCCTTACACAAGTGATGTT GGAGATGGATCTGACATCTATAAGCTTTATGCCGTTGTAGTCCATATTGATATGCTGAATGCTTCATTTTTTGGTCATTA CATCTGCTACATCAAGGATTTCCAAGGAAACTGGTATAGAATTGATGATTGGAAGGTTATGGGTGTGGAATTGGAGGAGG TGCTTTCTCAGGGCGCATACATGCTGCTGTATAGCAGGGTTAATGCACGACCCTCAGGACTTCAAAGTATTGAATCTTCA GAGGCGGCAGATATGAAAACATTCGAAGTGGGAGTGCAGCCTGGCTCTTCTAAACAAGCTGAGTGCTTTTCAGATACGAA TACTGCGACTTACAGCAAAGGGTGTGAGGCTCTTCCATTTGGTATTAGTCCAGAGTTGAAGATTTCTGCCAGTGAATCTG TGTCTTTGACCGAAATGAGCTGTGGTGCAAAAAGCGAGCATTCTAATGATATGGATGTTGAGGTTGCAAATGAAACTTCC TCTAGTGGCGTTGAATCATCTTATATCTGCAGTTCTCAAGCTGCCGAACATTGGGGGGATATAGATATTACCAGATCAAA TCCATGCTCATCTGTTTTAGGAGAGATTTCAGGCTGTAAAAAAGAGCAAGATGATAGTGATATGGCTAAATCTGCTCCTT CTCTAGTTTTGCCAAATGGCTTCTCGGGCTTTGATAAGGATTCTTATGTTTCAGAGGATTATCAGAACTTAAGGGGAGAT TCAGAACATGTAGATGCGATTGAGTGCAAGTCAATTGCAGCAAAAGACAATGTGAAGCTTAGCAATGGGTATGCCAGTTC AAACATACATGATATGCCTGTTGAAGATGGTGGTGCTGTATTTTCTGGGGTCGGTTCTTGTTCGAGTGAAACATCCTCAG CTGAGATGCATCAATTGAAGCGGAGATTGCCATTTTACAGTTCTGAAGCTGAGGAAGGAAATGAACTCAATAAAATGGAA TCAGCAGGGAACAAGTTAATAAAGTAG
Protein sequence (LotjaGi1g1v0373600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLVSGVSWDLKWLLQFVISAFVVVLGLHTLVKNTASKYFEVDANFDAMPGLLMDDTVCVLCRKNATKKCSRCKSVRYCSE ACQQLHWKSEHKMKCKALQSNSAISLAKASAAVNKTTSSISLIPQCGRGTFRPIKQPKNPLFPYDEFVKLFNWDKPGFPP CGLLNCGNSCFANVVLQCLSFTKPLIAYLLEKGHRKECCHNDWCFLCEFEIHVERARLSSQAFSPMNILSRLPNISGTLD CGRQEDAHEFMRFAIDTMQSICLEEFGGEKAVPPNLQETTLIQHIFGGHLQSEVICTECEKNSNQYENMMDLTVEIHGDA ASLEECLDQFTVKEWLHGDNMYKCDGCKGYVKAWKRLTVKRAPNILTIALKRFQSGSFGKLNKRVTFPETLDLSPYTSDV GDGSDIYKLYAVVVHIDMLNASFFGHYICYIKDFQGNWYRIDDWKVMGVELEEVLSQGAYMLLYSRVNARPSGLQSIESS EAADMKTFEVGVQPGSSKQAECFSDTNTATYSKGCEALPFGISPELKISASESVSLTEMSCGAKSEHSNDMDVEVANETS SSGVESSYICSSQAAEHWGDIDITRSNPCSSVLGEISGCKKEQDDSDMAKSAPSLVLPNGFSGFDKDSYVSEDYQNLRGD SEHVDAIECKSIAAKDNVKLSNGYASSNIHDMPVEDGGAVFSGVGSCSSETSSAEMHQLKRRLPFYSSEAEEGNELNKME SAGNKLIK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| TMHMM | 12 | 31 | 20 | - | – | |
| Phobius | 12 | 31 | 20 | - | – | |
| Phobius | 32 | 728 | 697 | - | – | |
| Gene3D | 53 | 101 | 49 | 5.0E-13 | – | |
| SUPERFAMILY | 55 | 99 | 45 | 1.34E-12 | – | |
| PANTHER | 56 | 551 | 496 | 3.0E-228 | – | |
| PANTHER | 56 | 551 | 496 | 3.0E-228 | – | |
| ProSitePatterns | 58 | 95 | 38 | - | ||
| ProSiteProfiles | 58 | 95 | 38 | 12.156 | ||
| Pfam | 58 | 95 | 38 | 6.8E-10 | ||
| Gene3D | 156 | 472 | 317 | 1.3E-84 | – | |
| SUPERFAMILY | 157 | 475 | 319 | 3.34E-87 | ||
| CDD | 160 | 465 | 306 | 2.50133E-155 | – | |
| Pfam | 161 | 464 | 304 | 1.4E-43 | ||
| ProSiteProfiles | 161 | 467 | 307 | 48.1 | ||
| ProSitePatterns | 162 | 177 | 16 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. | ||
| Biological process | Protein deubiquitination | The removal of one or more ubiquitin groups from a protein. | ||
| Molecular function | Thiol-dependent ubiquitinyl hydrolase activity | Catalysis of the thiol-dependent hydrolysis of an ester, thioester, amide, peptide or isopeptide bond formed by the C-terminal glycine of ubiquitin. |
Expression pattern of LotjaGi1g1v0373600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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