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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0375600 |
| Transcript ID | LotjaGi1g1v0375600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Lariat debranching enzyme; TAIR: AT4G31770.1 debranching enzyme 1; Swiss-Prot: sp|Q94K01|DBR1_ARATH Lariat debranching enzyme; TrEMBL-Plants: tr|I1JU50|I1JU50_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0375600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:85398349..85402114) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAGATAGCAGTGGAGGGTTGTATGCATGGCGATCTAGACAAGGTATACAAAACCCTCCAACACATGGAGAAAACCCA GAACACCAAAATCGACCTCCTCCTCTGTTGCGGCGATTTTCAAGCCGTGAGGAACGAGAATGATTTGAAGTCCCTCAACG TGCTTCCCAAATACCGCGAAATGAAATCCTTCTGGAAGTACTACTCTGGGTTAGAGGTTGCACCTTATCCCACCATCTTC ATCGGTGGTAACCACGAAGCTTCCAATTACCTCTGGGAACTGTGAGTATCTATCTGTTGCATTTTGATTCATAGCATGCT TGGTTCTATGATGAATTGCTTGAATTATGTGCAAATTGTGAAACTATACATACACTTAGGCTTGGATTTTTGTGGTCATT GTATTTGTAGGTATTATGGAGGATGGGTTGCGCCTAATATCTACTACTTGGGCGCTGCTGGGGTGGTTAGGTTTGGGAAT ATCCGAATCGGTGGATTGTCTGGAATTTTCAATGGTCGTCACTATAATTTAGGTTGTTTATTTGCTTATCATGAATAATG GGGTTATTGAAGTGGTAGCTTCATCAAGTATGAACTATGAATCTGAATGGGGTGATTTGACCTAAAATTATGCCCCATTT GGAAGACCTTATTTTAGCTTATCTTATAGAATGCGTTTATGCAAGTGTTTGACAGAGCTTATGCAAATAGCTTATGACCA ACCTATACCTATTCAGTGTTGTCAAATCGTGATCGCGGAATATCGCGGCGAGGCCAAAATCTGCTATTTCATTTAGCGGA TAGCGTCGCGGGCAAATAGCGGTATCCGCATAGCGGTTAAAATAAGTAAAAAAAATTATAGAAAAACAGCTTGTTGTGCT GTTTGTGCTAGTAAAAAACAGTTGCAAAAAATAAATAAAATTAAGACATCTAATGAAATGCATAAAATGATCATAATAGA ACAAATTTTAGAAACAAAACAGGGGGAAAAAAACAGAAAATAAAAAAACATTGTATGTAATGGCAAAAATAAACAAAAGA TGATGTGAAGAAAGAACAAATATTAGAAACATAGGTTCACATTCACAGTGGAAGAAGAAAAACAGAACAGATCATGATGG GAGAGGAGAAAAAGGAAGAACAGATATTAGAAACAAAACAGGACGGAAAAAAACAGAAAACAGAGTGTGAAAAAAAAAGA AAAAGGGAGTCTGAAAATGTGCAGAAAGAAGGAAGGGAAAAAGAAAAGTAAAGAAAACAGGGTATGAAAAAAGTAAACAG AGGCTAAAAACAAAAAACGGAAGAGTACGTAAAAGAAAAAGAAAGAAATAAAATAAAAAACAAAAAAACAGAGCATGGCA GAGTGAAGAGATGGGAGCCAGAAACTCACCGGAAAAGTCATCAGAAAAGCTATTGGGGTTGCCAGAGATGAGGGCCAGAA GCTTGATGTAGAAGGAGGAAGAGAGAAGGGAAAACTTGAAAGGTTTTGAGGCTCTTATAGAGTGAAGATTTTAAGTTATA AAACTTTTCTTCCATTAATTGGGTACAATTAATTCAGTCGGTGGCTGATTCCCACCTCCCAAGCGGTGCCTTTTTGAAAA AAAGTCCTAAAATCACACGTGATCTTCTCTTCCACCGCTATTTTCGCTTTGCCCGTCGCGGCGCTATTCAGTTTTGCGGC GCTATTGCGTTTATCGCGTTTGCCGCTACGTCGCGGCGTCGCGATTGCGGCACGGCAAATTTCCGCTACGTTATAGCGGC ATAGCGGCGCTATAACCGCTATTTAACAACACTGTACCTATTTTGAGCTTATACTTGTCCAGAATCTATTTTCAGCTTAT TTCTATTAGTTTCTCAAATTAGCTTATGAATAAGTGCTTATGCGGTTATTGTTTGCCATAAGCGCTTAATTAAGTTGTTT ACCCTAACACGCCCTTACGATATGATGTTTGGTGTTTCTCTGAGCAGGACACTTTGAGAGGCCTCCATATGATCAGAGCA CCATCAGGTCTGTGTATCATGTTCGTGAATATGACGTTCAAAAACTTAACCAAGTTCAGGAACCCATTGACATTTTTCTC TCACATGATTGGCCGGTGAGAATCACTGATTATGGGGATTGGGAGGAGCTTGTTCGGAAGAAGAGTTATTTTAAGCAGGA GGTAAGATTTATTATTTTTTTGTTTGTAAATGAAATCATTAGGTGTGAAACTAATAGAGGGAAGTGTAGAGCCTCATTAT GCATGATTATTTGTGGAGTATTCATAGAGATGGAGTCCTGGAGTATTTGACAAGATGTACTATTTTTAGTTTTTAAGTAC ACTTCCTGTAACAACAGAATGTCTCATTTCTTTAGCTGATGATTTACCAGATAGAAGAAAAAAGACTTGGGAGCAAACCT GCTGCCCTACTTCTAGAAAGATTGAAACCGCATTATTGGTTTTCAGCTCACTTACACTGCAAGTTTTCCGCTCTTGTTCA ACACGGGGAAGGAGGTCCACTGACAAAATTCCTAGCACTTGATAAATGTATTCCAGGGCGTGATTTCTTACAGGTAAAAT GCCAATTTTTCAGTCTGGGGTTAATCTCCCGTGTTAATCCACTGTTTGAGTTAGTGACTACAATAATGACATGTTCTATG TCTTTAGATCGTGGAAATTGAATCGGAGCCAGGGCCTTATGAGATTCAGTATGATGAAGAATGGTTAGCGATAACACGGA GGTTCAACTCTATTTTTCCTCTGACCACCAAAGGTGCAGATTTTAGGTGTGTAATGCGCATGTGATACTAGCATTTAGGA TTTGATTCCTCATATAAATTAAAATCTTCTTTTGTTTTACAATCTTCTTTTTTCCTTCACCAACAAAAAGAAAATTGATG CAAAATATAATGCTGTATCACTTTCTGACAGAGCTGTAAATCTTGAGATGGAAGATTGTCGTGAATGGGTTAGAAGCAGG CTACGAGAGAGGGGGTGCAAACCTTTTGAATTCGTTAAAACAGCTCCATGCTATGATGATCCTTCTCAATCCAGTTCTGA TGGTGCTTTTACCGGTATTTCTTCATTTCCCATTACAAATTTTACATTCTAAATTGTTCAGTTTGTGCTTGGTTAAAGAT ATTCATAATCATGATCATTCAAGTGTTTGGGAAAATTTGCGAGCTGCACCTGTCTTATCTTATCCATGCATATCTTATGT GATGCTCCAATGCATGCATGTCTAAGATAGTTTGATGGTTAATCAGCATCAACTGTCGTATATTTCAATTTGATATTATG GGTCACAATGACACAGTTAATACACCCTATAGGCAATCACCCCTCAAATGAATTGTAATAAAAAGTTTATTCTTCTAAGT AAATGTCATTCTCCTTTGATGATGTTTGCCATGGTTTCCTTGCGCCATTCTGCCTTGTTTTCTATGGTTTCAAATGTAAA TGTTAAAGTGGCTATTTTATTTATTTTTTGCAGCGAGTCCTCGGAATCCTCAGACAGAATCTCTTCTGCAGCTTCTAGAG CTTCCTTATCTTCTTGATAGGAATCCTGAAGAAAAGAACTTGTCACCTTATCCTTCTCCTTCAATTCAAAGAGGTAACTT TTAACCGTTTTAATTGGGTCATTGAAGGAAACTGATCCATTTTTTATCACAAGTAATAGAGGAGAGTGGGGAATGATACC TAAGATAAATAAATCAAAATCATTTTGGCACTTGAGTGAACTTATAGTCAACAATGTTTATTACTTGTTTCTTCAAATAT CTCTAA
CDS sequence (LotjaGi1g1v0375600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGATAGCAGTGGAGGGTTGTATGCATGGCGATCTAGACAAGGTATACAAAACCCTCCAACACATGGAGAAAACCCA GAACACCAAAATCGACCTCCTCCTCTGTTGCGGCGATTTTCAAGCCGTGAGGAACGAGAATGATTTGAAGTCCCTCAACG TGCTTCCCAAATACCGCGAAATGAAATCCTTCTGGAAGTACTACTCTGGGTTAGAGGTTGCACCTTATCCCACCATCTTC ATCGGTGGTAACCACGAAGCTTCCAATTACCTCTGGGAACTGTATTATGGAGGATGGGTTGCGCCTAATATCTACTACTT GGGCGCTGCTGGGGTGGTTAGGTTTGGGAATATCCGAATCGGTGGATTGTCTGGAATTTTCAATGGTCGTCACTATAATT TAGGACACTTTGAGAGGCCTCCATATGATCAGAGCACCATCAGGTCTGTGTATCATGTTCGTGAATATGACGTTCAAAAA CTTAACCAAGTTCAGGAACCCATTGACATTTTTCTCTCACATGATTGGCCGGTGAGAATCACTGATTATGGGGATTGGGA GGAGCTTGTTCGGAAGAAGAGTTATTTTAAGCAGGAGATAGAAGAAAAAAGACTTGGGAGCAAACCTGCTGCCCTACTTC TAGAAAGATTGAAACCGCATTATTGGTTTTCAGCTCACTTACACTGCAAGTTTTCCGCTCTTGTTCAACACGGGGAAGGA GGTCCACTGACAAAATTCCTAGCACTTGATAAATGTATTCCAGGGCGTGATTTCTTACAGATCGTGGAAATTGAATCGGA GCCAGGGCCTTATGAGATTCAGTATGATGAAGAATGGTTAGCGATAACACGGAGGTTCAACTCTATTTTTCCTCTGACCA CCAAAGGTGCAGATTTTAGAGCTGTAAATCTTGAGATGGAAGATTGTCGTGAATGGGTTAGAAGCAGGCTACGAGAGAGG GGGTGCAAACCTTTTGAATTCGTTAAAACAGCTCCATGCTATGATGATCCTTCTCAATCCAGTTCTGATGGTGCTTTTAC CGCGAGTCCTCGGAATCCTCAGACAGAATCTCTTCTGCAGCTTCTAGAGCTTCCTTATCTTCTTGATAGGAATCCTGAAG AAAAGAACTTGTCACCTTATCCTTCTCCTTCAATTCAAAGAGAAGTAATAGAGGAGAGTGGGGAATGA
Protein sequence (LotjaGi1g1v0375600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKIAVEGCMHGDLDKVYKTLQHMEKTQNTKIDLLLCCGDFQAVRNENDLKSLNVLPKYREMKSFWKYYSGLEVAPYPTIF IGGNHEASNYLWELYYGGWVAPNIYYLGAAGVVRFGNIRIGGLSGIFNGRHYNLGHFERPPYDQSTIRSVYHVREYDVQK LNQVQEPIDIFLSHDWPVRITDYGDWEELVRKKSYFKQEIEEKRLGSKPAALLLERLKPHYWFSAHLHCKFSALVQHGEG GPLTKFLALDKCIPGRDFLQIVEIESEPGPYEIQYDEEWLAITRRFNSIFPLTTKGADFRAVNLEMEDCREWVRSRLRER GCKPFEFVKTAPCYDDPSQSSSDGAFTASPRNPQTESLLQLLELPYLLDRNPEEKNLSPYPSPSIQREVIEESGE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 377 | 377 | 1.4E-196 | – | |
| SUPERFAMILY | 1 | 246 | 246 | 2.37E-28 | – | |
| Pfam | 1 | 229 | 229 | 1.1E-12 | ||
| CDD | 3 | 259 | 257 | 2.85874E-173 | ||
| Gene3D | 7 | 245 | 239 | 5.7E-9 | ||
| SMART | 235 | 368 | 134 | 4.4E-35 | ||
| Pfam | 244 | 365 | 122 | 3.7E-29 | ||
| MobiDBLite | 372 | 395 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | MRNA processing | Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide. | ||
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. | ||
| Molecular function | Hydrolase activity, acting on ester bonds | Catalysis of the hydrolysis of any ester bond. |
Expression pattern of LotjaGi1g1v0375600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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