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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0376600 |
| Transcript ID | LotjaGi1g1v0376600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nuclear nucleic acid-binding protein C1D; TAIR: AT5G25080.1 Sas10/Utp3/C1D family; Swiss-Prot: sp|Q3KPR1|C1D_XENLA Nuclear nucleic acid-binding protein C1D; TrEMBL-Plants: tr|I1K8L9|I1K8L9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0376600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:85553048..85557788) extracted from Lotus japonicus Gifu genome v1.2.
CCCTAGGTTAGGTTTGTGCCTCCAACCAGGGTTAACTGACAATAGTGGAAACAGAGCACACTGCGCTGAACACAGAAACT GGTCTCATTCATTCATTCATTCATTCATCACCATCATCAGAGAATCAGAATGGTGAAAGCAAGTGCAGAATCAGCAGTAC CTGAATCAGTGACGGATTCAGTGACCACCACACTCTCCAACCTTCAAGAATTGCGAACTCACTTCCACCAATTCCTCTCT CTCACCGACCCTGAAACTCTCTCCCAACTCCCTCCTCTGCAGCGCGCTCAATCCCTCTTCCTCCTCTCCAAAATCACCTC CACCCTCCTCGCATGTATGTAAATAATTCATTTTTGTAAATTTTGTTAATGAATTATCTAATTGCTGCAGTTTTAATTTG AAGTTACAATCTTTTCATTATTTTCAGTGAATCTTAGGTGTTCTGGGATTAACCCAGATGATCATCCTGTTAAATCAGAG CTTGTAAGTTCCTGCTTCTGCTAATTCTGTTATTTCACACTACCCAGTTGCTTCAAGTTTTGATGTTTTTGTTTTTGTAT TCACAGGATAGAGTAAACTTGTATGAAGATAAACTGGATCGTTTGCTTGATTTGAGTAAAGGTATATATATTTCATTATT TAAGTTTTTGTGTATGAAATTCAATGTTAAAGTTATAATTGAAACATAGTGCATGTTTGGATCAGCCTCTCTTTCTTCGA ATTCGGAATCAATTATGTCGCCCGGAATTGTTTTTTGGCTTTAGAATTAATTGTAGAAAGATTTCCAAACATGCATATAA TAAGTAATTGGTAACACATGTTATTCAAGTCTCTCAGATTCCGTTAGCCAGCATTGTCAAAGAACGGATATAGAGGCGTT ATGACGTAGCGCTATGAGGGCTCACCGCTATCTGCCATTTGCCGCTATTTCCCGCTTTGAGGGCTTGCAATAACGATTTT TTTGCTTTATGCTATTTTCCGTTATCCACAATTAACATTTAACAACACTGCCATTAGCACTATTCTCTGTTTCAATTATC TGCATTTCGCTGATTTCGGATTTGTTTGTGAAGCCCCGTTACGGCCCTCTACTACCTTGAACTATCAGGCGGCTACACGC TTCATAGAACACTCTCTGCCTGACCTCACCTCAGGTGGGTTATGAATTGTTTTACTATTCCTTACAAGGGTGATTTATGT ATGGCTCTTCCATTTTGATCTCATGTGAGTAAATAAGTGGTTATTTCTTGCAGAGCAAAGGCAGAATATGAGGAACATAA GTAGGGGGGAGGGACCTAAGAAGAACCATCAGGAGCGGGCTGCTAAAAAGAGGAAGTATCAATCTTCTGAGAAGACATCG GTTCAAGCTGCTGCCCAGGAGTTTCTGGAGAAAGCAGCCAGGGAGATTCTTGGGCATAATGATGGCGGTGTTAAGGGACC CATGCAAATTAACAATTCAGAGGATGGCGATGATGATGAAGAATTACCTGTGTCCTGATTTTCCTGATTCTGGTAGAGTC TCTTGTCAGTTCTTATTTGCTTTACCAGCTTATTGTACCAAATATATGTGTTACGTTATAGTAACCGTTATGCTAGGTGC TGAGAATTTTTGATACATTTTGGGCTAAAAATACATTTTAGAGGATCTTCTGACATTTGTCGACAAACCTATTAGATATG TGCAGTGTTGTGGACCACCAGATAGGAACCTATATTGCATTTGATAATCTTAGATATGAATTTTTTTTGCTATTTACTAT TATTTAGTGGTTAACATTGAGATTTGTTTTTCAAGATCTATCTGCTCTTCAACATGGATAGCCTATCATTTTCCAGACTG TAGGCTTTACGGTTTTGGAGATGCAATACATATGAAATTTTCATTGGGTTATGCTCTACAGTTCTAACATGATTATATGA GTAGAGTTCATTGCAACCTGCCAACTCAAATAACATAGTAGGAGCTTAGGACTTCCTAGAGTATCATGTCATTGCCTATT AATGTAAAACCTACTGTTTGTCATGCTAGTAAATTGGGAACTTACCAATTCCAGTGGACATAAAATAGCTGAGACTAGAA AACATAAATGCGAAATGACCGGTAATTTTTCCTTTTCCTTCAATGACGGTTTCGACATAACAATGTTGGGGAGAGTGGGT TGGCATCATTTTTGTCACTTAGCGACACAGTATGAAATGAATTGAATAAGTGATGTACTGATAAATTAAAACAAGAATTA ATTGCCATGTGAGTTGTGAGGGATTTGACTTCTTTAAAGTGAGGAGTGCATTTCAAGGGGGTAAAGCGCTAAAGTGTGAA GTTATAATTGTTGACTAGGAAGTAAATTTTAACAATTTAATTGTTTACTGTATGTGTTTGTATTTTATCACAACATCAGC ATCTGATTTTTCAATCCACAGTTATAACTTATAACCATAGTTATCAATAGTGCGTGACAGTGGCGTTTGCACGCCTACAC ATCGCGGCAGTGTGCCGCTACAAGGGCCTCCATCACATTGCAGTTGACTATCACGGACGTAGCGGCTACTATCGTCGCCT TTCATATACTATTCAGCTATTGCGCCGCAACTGCAGATGGGACCTGAAAACCTGAAAATTCAGAGTCAAAAAGGGGGTCA AAAGTCTGAAAAGCCCATGACGACTATATTCTCTCTTCCACTCACTCATAGTCTGAGTATTGAAAGCCTTCTATGAAAAC TATGTTAGTGTTCCTTCTGGCCAAGTCCTTGTTTTTTCTGGCTAGACTATATTCTTCTTCATCCTCTATTCTGTCCTTAT TCATTTTTTGTTCCTCTTTCTGAGTTTACAGTCACATTCTTGATGTCCTGGTTTTTCATATTTTATCTTCTGTTGCTATT TCTCTTTGTTATCTCATTTGTTCTACAAGCTTTAGGTCACATTCTCTCTTCTTATCCTTATTTTGTGCTGTCTTTTTTTT TCTTAAACTATTCTGCCTTTATTTTAAGTCTAATCTTATTTAAGTCCTCACTTTTGATATTATGAACCTATGTATTTATC TTAAAACCTTATGACATTTTGATTGTTGGTTATGAATGTCTTTAATTTTGAGAAATGTTTTACTTTGGAGCATTATCTTC AATATTACAGTCATCCCATTATGTGCTATCCCCGCTTTAGCAGTTTTAGGATTGAGTTATAACTTATAAGTCATAACTTC ACATTTCACTTTAGAAGAGCCAACTTTGAATTGTAAGTTGGACTTTTGGTTATATTTTGTGGTATGGCAACATTAATGTT TATGTGGATAAAATCATTGACTCAGAAATATAAATTGATAATAATAGCTGAGCTAGACCACTCTTCTTTTGGACAATGCA CCTACTAAAAGTCTGAAGAGAACAAAATAAATTGTCAATTATGTGGAAGAAGGTTGTGTTAGGTTAGGCCTGCGGAAGCT AACGTAAAACTGGCCATATCTTTAATATGGATCTAGTGATCCATATAGCCGACCTCACTTAGTGAGATAAGACTTTTGAT GTTGTTGTTGGAACTTGTTTTTTGGTCCATCTGTCTGGTTACACAATTGGAGGTAACACTATTCCTTACTGCTGATGGAA GGGTACTTGTTTTTCTGGTGTTGTGTTGCTTGGATTTTGCCTCCTTATCATAATCATTTTTTGCTTGATTTCACCTCCAT TAAAGGTTGGTTTTTATCTACTGCATGCAATTTACTGCTGCCGTTCAATATGGAATCTTTGTTTGATGATCAAAATGTTA TAGTTGGCAATAAATAAATGGAGTAAGTTGCCAAATTAATCCATATAAAGTTCTTGCAATCTTAACCTGTTTTGTGCTCC TCTACTGTATTCTTTAAATCACTTACTTCAAAGTGGCCCTTGTGACAGTGTAAATTTAACCACAGGGTGTCAAATTTAGT CGGTGAAAAAAGAGATTCTGGGACCACTGGACAGTTTAATTTTTGCAAGGATAATGTACTCCATTAAAATTCAGGTATTA GTTTAACAGGTTAATTTTTTTTAAGTAACTGCCTCAACTACACATATATATAAGTTCCTGTTTTGACAACTAATCACTCC AACCTAATTACTCCTTGTACCATTGATTAGAGTTATGTTATGACCATGAATTGTATCAGAGGCTGAGTTTCTACATAGAG CACAAAAATGGAAATTCGTAGCGCGTGTATTTCTGAAAGCTTATGCTCTGTTTGTGTAGGCGTTTGACACTAAAATACAT GCTTATTTTCCAATTCACTCTGTAATATAGCGTAGCGCTCTGAGGGCTCATTGCTATTTGCAATTCACTTGGTAATAAAT TAGAGTTCTCACTCTTGAAAAAGAGGTACTCAATAAGCACACTCTCCCTCACGTTGACACACGTCATCCTTTTTAAAATT TTTCACATTCTCTCTAATTTCTTTAAGCTGTGTCAATCACGCGCCCTCCCTGCTCCTGTTTTTCTTCAATTTGCCCACTA TACTCAATTATGTTGTTACAGCACTATTCTCTTCTCCTTTTCAAAATCCCTCAAATTTCTAAACCTTCTCTCAAATCCCT TAGTTTCAGACTTTCAGCAACAATTTCATACAACATTAATCTTTTCCATTCCTTGTCCCTTAATTTCCACAATCAAATAT CCTTTTCTACAGACCTTTTGAATTTTTTTATACTGTATTTTTTGTATATATCGATTTCTGCCTCACTCTTTCTCTCCATC TCTCTTGATTTCTCCTTTTTT
CDS sequence (LotjaGi1g1v0376600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGAAAGCAAGTGCAGAATCAGCAGTACCTGAATCAGTGACGGATTCAGTGACCACCACACTCTCCAACCTTCAAGA ATTGCGAACTCACTTCCACCAATTCCTCTCTCTCACCGACCCTGAAACTCTCTCCCAACTCCCTCCTCTGCAGCGCGCTC AATCCCTCTTCCTCCTCTCCAAAATCACCTCCACCCTCCTCGCATTGAATCTTAGGTGTTCTGGGATTAACCCAGATGAT CATCCTGTTAAATCAGAGCTTGATAGAGTAAACTTGTATGAAGATAAACTGGATCGTTTGCTTGATTTGAGTAAAGCCCC GTTACGGCCCTCTACTACCTTGAACTATCAGGCGGCTACACGCTTCATAGAACACTCTCTGCCTGACCTCACCTCAGAGC AAAGGCAGAATATGAGGAACATAAGTAGGGGGGAGGGACCTAAGAAGAACCATCAGGAGCGGGCTGCTAAAAAGAGGAAG TATCAATCTTCTGAGAAGACATCGGTTCAAGCTGCTGCCCAGGAGTTTCTGGAGAAAGCAGCCAGGGAGATTCTTGGGCA TAATGATGGCGGTGTTAAGGGACCCATGCAAATTAACAATTCAGAGGATGGCGATGATGATGAAGAATTACCTGTGTCCT GA
Protein sequence (LotjaGi1g1v0376600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVKASAESAVPESVTDSVTTTLSNLQELRTHFHQFLSLTDPETLSQLPPLQRAQSLFLLSKITSTLLALNLRCSGINPDD HPVKSELDRVNLYEDKLDRLLDLSKAPLRPSTTLNYQAATRFIEHSLPDLTSEQRQNMRNISRGEGPKKNHQERAAKKRK YQSSEKTSVQAAAQEFLEKAAREILGHNDGGVKGPMQINNSEDGDDDEELPVS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 201 | 194 | 9.7E-66 | – | |
| PANTHER | 8 | 201 | 194 | 9.7E-66 | ||
| Pfam | 22 | 96 | 75 | 3.7E-8 | ||
| MobiDBLite | 140 | 213 | 74 | - | – | |
| MobiDBLite | 142 | 164 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0376600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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