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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0377300 |
| Transcript ID | LotjaGi1g1v0377300.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane 9 superfamily member; TAIR: AT5G10840.1 Endomembrane protein 70 protein family; Swiss-Prot: sp|F4KIB2|TMN8_ARATH Transmembrane 9 superfamily member 8; TrEMBL-Plants: tr|A0A0L9UHB0|A0A0L9UHB0_PHAAN Transmembrane 9 superfamily member; Found in the gene: LotjaGi1g1v0377300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:85684316..85689288) extracted from Lotus japonicus Gifu genome v1.2.
AACATAATAAAAAAACAAAAGAAAGAAAAGAGTAGTAGTGAAGTGAAAATGAAAATATCAAAATAGGAAATAAGGTGAAG AAAAATGAAAAGCGCGTTTTAACCGGAAGCACTTAACATCAGGTATAAGTTTAAGACAGTAGTGGTGACAATCCCAATTT GCACCGGAGAAGAAGAAAATCAACAACCATCAGATCGCGACTACGATTCTTCACCTGCCATCGCTCACAACTCAACAAAA CCACACCGACAAAGAAAATCAACATCCCGATCTCGATCTCGAACGCCATGGCGTTTTTGAGATCTCTCGCTTTCTCCGCA GTTCTTCTTCTTCTCATTCATGGTGCTCACTGCTTCTACCTCCCCGGCGTCGCTCCACAGGACTTTGTGAAGGTAACGCC GACTTGTTTCCTTCATCTGTGATTGATTGAATCTGAGGATTCAGATCTGTGTTGGATTGCACGTAACGTGATGTGATTGA TGATTCTAGGTTTTCCAGTTTGTTTAGTTTATCATTGATTTTCTAATTGTTGGAAGAGGATCAGGAAACTGTGTGAAATG TTGAGTCTTAATTTCAGTGGATCGATTCACTTGGTTTTGATTTCTATTACTTATCTTGCATTTATCAGTCTCAGCATTGC TGATGTTGGTTGAAATTAACTAGAAACAGTTTTTGGTGTTGTTTGATGTGAAACTTGGCTATGTATCTTTATAAAATGTT GGAGGATTGGACTGGAAACTAGGGTGTATAAGTATAACTTAGCGGATCGCTCTAGTACCTTCTATTTTATTGCTTTTCTT TGGATTGAGAAGTTGATTTTTTAATATTTAGCTGTAGTACCATTTGATGCATGCAATTGAAACTTCACAGAAGAAGCTGA TTTGATTCGTGATAGTGGAATCGGAGACAACGGATGGTCTTGAAAATCGATGAATGAAAGAAAGGAATGTGACACTAACC GCAACCGTCTAGTTCCTTTCGCTCGTTTATTGGTTTTCAAGACGATCTGTTGTTTCACTGATCCATCCATTACTGTGAAT TGTATCATAAACTTTTTGGCTTCATCCTCCTTGTCTTCTGCTTTTCATTTTACTTTTGTTTACTGACCCATTTATTTCTA TACCTCTAGTCTTCTGCTTTTTAAGGTTATTTATAAATAAAAAGGATGTCATCAGATTGCCTTCACGATTAAATTCTTGC ATCCTATAACTTTACGTCGTACCAGCTACTGTGGCACTTATGAATGATAGAAAAAAATATTTGACCGCTTGTAGCCCCTT TTAAAGTATTCACTATGCATATAAGACAGTTTGGTATTCAATTGCCATACATTGTTTCAAATAGGATATTTGTTTTTGTC ATGCTCTCAATCTGGCCAAGGTGAATAATGCTCAGATTTTATTACAGATCCACTTCTTAAGTCATTAACTGACGTTTTAG TTTTTACATATTTCTTTGGTGCAGGGAGATCCATTGCAAGTGAAAGTAAACAAATTAACATCAATAAAGACCCAGCTGCC ATACTCATATTATTCACTTCCTTATTGTGCCCCCAAAAAAATTCAGGACAGTGCAGAAAATCTTGGGGAAGTGCTTCGTG GGGACCGCATTGAAAATTCTCGTTATGTGGTCAGTATTACATATTAATTCGTGGCTAATTAATTTTAGGTAAATTACAAG ATAGGATTCTTGGTGAAATATTTTCAGTTTAGTAACAACTAGCCACTGAATTGATTAACCATGTTTGAAGAGTTGTTAAT GAGTAATCACTTAACTTGATTAACTACATGAGTGGTTGTTTTAACCTAATTTTGTTTAGCACTCTCTTAAACATTTTTTA ACATCTCTTAATATTTATGGTTATTAACTGATCCTTATTCCATGATATTCTGCAGTTCAAAATGCGCGAGCCAGAAATGT GCAATATTGTGTGTAAGATTAAGCTTGATGCTAAAACTGCAAAAGCGTTCAAAGAGAAGATCAATGATGAGTATCGGGTG AACATGTATGTTACATTGTTAATCTATTATTTTCTGCCACAACCTCGATGTGTTGTATCTTATAACGGTTCTGCCTCTAA TTCACAGGATCCTAGATAACCTTCCTCTAGTTGTTCCCATAAAACGGAATGATCAGGATTCTACTGTTTATCAGCTTGGT TTCCATGTTGGACTCAAAGGCCAGTATAGTGGGGTATGATTACTATTTTTTAGCTCCATTGCTATTGTTATGAATGCCAA GTAGTGCCTTTACTTACTTTATCTGGATGCACAGAGCAAGGAGGAAAAGTTTTTTATTCACAACCATTTGGCATTTACTG TCAAGTATCATAGAGATGTGCAAACTGAATCCTCTAGAATCGTGGGTTTTGAGGTCAAGCCATTCAGGTCATTATTTTAT GCTACAAATGCTGTGTTAATTTATTCCATTTTATTTTCTATGATTGTAGGAGTCTTGTGCATGGGGTTGTCTTTTATAAT TGGTTCATCTTTTTGTTGTATTTACTATCTAATAGTGAATTCTCAAATCTGAGTTTTGATGTGCAGTGTCAAACACGAAT ATGAACAAGGTCAATGGTTTGAAAAGAAGACTCGTTTGACAACCTGTGACCCTCATGCTAAACACACCGTTATCAACTCT AACACTCCTCAAGAGGTTGAAGAGAACAAGGAAATTATCTTCACATATGATGTTGATTTCCAGGTGAGATTATGGAGATC TTAATATAGTATAATTGTACTTTCCTTTCCTTTAGAAGTTTTATTGTCATACTCAAGTCAAGTAGTAAGGCATTCAGTTT TATATGGAAATTCTTGTTTGTTGCTGGGGTTATAAAATATAAAAAAAACTTTTGCATTGGGGGGCATTTTTATAGTTTGG TATTCTTTTAACTAACTTTTCTTTCTCTTCCATCTAAGTTGACTCTTCTGTGTTATCCTCCTCCTTGTTTTGTTTTTACG ATGAAATACGTTGGTGGTTGTATTTCTTATTATTTTCTCTTATCTTGTGCTGCTGCTTTCAGGAAAGTGATGTGAAGTGG GCTTCAAGATGGGATGCATATTTGCTCATGAATGATGACCAAATCCACTGGTTCTCAATTGTTAACTCCTTAATGATTGT TCTCTTCCTTTCGGGCATGGTGGCAATGATTATGCTGCGGACCCTGTACCGTGACATTGCAAAATATAATGAGCTTGAGA CCCAGGAAGAAGCCCAAGAAGAGACTGGTTGGAAACTTGTTCACGGGGATGTCTTTAGGCCCCCTAGCAACTCTGATTTG CTGTGTGTTTATGTTGGGACTGGTGTTCAGTTCTTTTGGATGGTACTAGTAACCATGATGTTTGCCATCCTCGGGTTCCT TTCTCCTTCAAACCGAGGTGGGCTAATGACAGCCATGCTCTTGCTTTGGGTGTTCATGGGAATTTTCGCTGGTTACTCCT CAGCTCGCTTGTACAAAATGTTCAAAGGATCGGACTGGAAAAAGATTTCCCTCAGGACTGCAACCATGTTTCCTGCAACT GTCTCTCTCATCTTCTTTATATTAAATGCTCTCATATGGGGCCAAAAATCATCTGGAGCTGTGCCATTTGGTACTATGTT TGCTCTGGTCTTTTTATGGTTTGGGATCTCAGTCCCACTTGTTTTTGTGGGCGGCTATGTTGGATTTAAGAAGCCTGCGA TTGAGAATCCTGTGAAGACAAACAAAATCCCAAGGCAGATACCTGAGCAGGCCTGGTACATGAACCCAGTCTTCTCTGTT TTGATTGGGGGAATACTCCCATTCGGAGCTGTTTTCATTGAACTTTTCTTCATCCTTACCTCAATCTGGTTAAATCAGTT TTACTACATCTTTGGATTCCTATTTTTGGTCCTCCTCATCCTCATTGTCACCTGTGCTGAAATAACCATTGTGCTCTGCT ACTTCCAGTTGTGCAGTGAGGATTACTTGTGGTGGTGGCGGTCATACCTCACCTCTGGTTCTTCTGCACTTTACCTCTTT CTTTATGCAACATTCTACTTCTTCACCAAGCTTGAAATCACAAAGTTGGTGTCTGCAATATTTTACTTTGGGTACATGCT TATAGCTTCTTATGCGTTTTTCGTGGTAACCGGTACTATTGGATTTTATGCATGCCTTTGGTTCACTCGGCTCATATACT CCTCAGTCAAAATTGATTAGTTATAGCCTGTCAGCGGCTTGGATTAGTCTACAACACTTCTTAAAGGATGAAGAACTGAT TGTGTAAGGATTTTGAAATTCATGTACTCACTCTATCTTGTTCAGATGTAACCTATTTTATGCAATTTTGAATTGTGATG TCAACTATTCTTTTGTTTCAGTATCATTTTAATTGCCTTTGTCAAAGTAGGCTTTTTTCTGTGGTAGATCAGATATACCA TTTGGACAGAATTGTAATCTCAACAATTGGGTGGGCATATGATGAATGAATGAGTCTTTAACTTCAGACTAGTTATTTGC TGTGCTTCCAAGAAAGCAGAATCTGTTTAAGATTGCTATAGCGGCACAACCTCTGTTCTCGTGATTGCTTTCCTCACTGT CATTCAGCAAAAGATGATTATTCAATGATTAATATTTTTTTTTGACTTCCAATGATTAATTTAAATTGTCTGCAAACGTG CAAAATTTAAGATCTATCTCCGATAAGAATCACAGGCCTGAAGACTGAATACCTCCCCATCACAATATGACACTTTAGGA ATGTTGCTACTTGTGAAGGAGTGGTTAGGTATTCTTTTGTTGCTTTGATTTTGCTTCCTCGAAGAAGATAAGTCCTTGTT CTCCTCTCATGCGGAGCTATGGGAGTTATTGTTGGGATTAAGAGTTATTGTTGGGATTAAGGTTGCTCCGCCAAGGAGAC TCGAAAAGGTTATTACTGAATTGAATTCTTCCTGTAGTGTTAATTTTTTGGGATTCGAGTGTGCTGATTCTCATCTGTGC GCGCAAATGTCGA
CDS sequence (LotjaGi1g1v0377300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTTTTTGAGATCTCTCGCTTTCTCCGCAGTTCTTCTTCTTCTCATTCATGGTGCTCACTGCTTCTACCTCCCCGG CGTCGCTCCACAGGACTTTGTGAAGGGAGATCCATTGCAAGTGAAAGTAAACAAATTAACATCAATAAAGACCCAGCTGC CATACTCATATTATTCACTTCCTTATTGTGCCCCCAAAAAAATTCAGGACAGTGCAGAAAATCTTGGGGAAGTGCTTCGT GGGGACCGCATTGAAAATTCTCGTTATGTGTTCAAAATGCGCGAGCCAGAAATGTGCAATATTGTGTGTAAGATTAAGCT TGATGCTAAAACTGCAAAAGCGTTCAAAGAGAAGATCAATGATGAGTATCGGGTGAACATGATCCTAGATAACCTTCCTC TAGTTGTTCCCATAAAACGGAATGATCAGGATTCTACTGTTTATCAGCTTGGTTTCCATGTTGGACTCAAAGGCCAGTAT AGTGGGAGCAAGGAGGAAAAGTTTTTTATTCACAACCATTTGGCATTTACTGTCAAGTATCATAGAGATGTGCAAACTGA ATCCTCTAGAATCGTGGGTTTTGAGGTCAAGCCATTCAGTGTCAAACACGAATATGAACAAGGTCAATGGTTTGAAAAGA AGACTCGTTTGACAACCTGTGACCCTCATGCTAAACACACCGTTATCAACTCTAACACTCCTCAAGAGGTTGAAGAGAAC AAGGAAATTATCTTCACATATGATGTTGATTTCCAGGAAAGTGATGTGAAGTGGGCTTCAAGATGGGATGCATATTTGCT CATGAATGATGACCAAATCCACTGGTTCTCAATTGTTAACTCCTTAATGATTGTTCTCTTCCTTTCGGGCATGGTGGCAA TGATTATGCTGCGGACCCTGTACCGTGACATTGCAAAATATAATGAGCTTGAGACCCAGGAAGAAGCCCAAGAAGAGACT GGTTGGAAACTTGTTCACGGGGATGTCTTTAGGCCCCCTAGCAACTCTGATTTGCTGTGTGTTTATGTTGGGACTGGTGT TCAGTTCTTTTGGATGGTACTAGTAACCATGATGTTTGCCATCCTCGGGTTCCTTTCTCCTTCAAACCGAGGTGGGCTAA TGACAGCCATGCTCTTGCTTTGGGTGTTCATGGGAATTTTCGCTGGTTACTCCTCAGCTCGCTTGTACAAAATGTTCAAA GGATCGGACTGGAAAAAGATTTCCCTCAGGACTGCAACCATGTTTCCTGCAACTGTCTCTCTCATCTTCTTTATATTAAA TGCTCTCATATGGGGCCAAAAATCATCTGGAGCTGTGCCATTTGGTACTATGTTTGCTCTGGTCTTTTTATGGTTTGGGA TCTCAGTCCCACTTGTTTTTGTGGGCGGCTATGTTGGATTTAAGAAGCCTGCGATTGAGAATCCTGTGAAGACAAACAAA ATCCCAAGGCAGATACCTGAGCAGGCCTGGTACATGAACCCAGTCTTCTCTGTTTTGATTGGGGGAATACTCCCATTCGG AGCTGTTTTCATTGAACTTTTCTTCATCCTTACCTCAATCTGGTTAAATCAGTTTTACTACATCTTTGGATTCCTATTTT TGGTCCTCCTCATCCTCATTGTCACCTGTGCTGAAATAACCATTGTGCTCTGCTACTTCCAGTTGTGCAGTGAGGATTAC TTGTGGTGGTGGCGGTCATACCTCACCTCTGGTTCTTCTGCACTTTACCTCTTTCTTTATGCAACATTCTACTTCTTCAC CAAGCTTGAAATCACAAAGTTGGTGTCTGCAATATTTTACTTTGGGTACATGCTTATAGCTTCTTATGCGTTTTTCGTGG TAACCGGTACTATTGGATTTTATGCATGCCTTTGGTTCACTCGGCTCATATACTCCTCAGTCAAAATTGATTAG
Protein sequence (LotjaGi1g1v0377300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFLRSLAFSAVLLLLIHGAHCFYLPGVAPQDFVKGDPLQVKVNKLTSIKTQLPYSYYSLPYCAPKKIQDSAENLGEVLR GDRIENSRYVFKMREPEMCNIVCKIKLDAKTAKAFKEKINDEYRVNMILDNLPLVVPIKRNDQDSTVYQLGFHVGLKGQY SGSKEEKFFIHNHLAFTVKYHRDVQTESSRIVGFEVKPFSVKHEYEQGQWFEKKTRLTTCDPHAKHTVINSNTPQEVEEN KEIIFTYDVDFQESDVKWASRWDAYLLMNDDQIHWFSIVNSLMIVLFLSGMVAMIMLRTLYRDIAKYNELETQEEAQEET GWKLVHGDVFRPPSNSDLLCVYVGTGVQFFWMVLVTMMFAILGFLSPSNRGGLMTAMLLLWVFMGIFAGYSSARLYKMFK GSDWKKISLRTATMFPATVSLIFFILNALIWGQKSSGAVPFGTMFALVFLWFGISVPLVFVGGYVGFKKPAIENPVKTNK IPRQIPEQAWYMNPVFSVLIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFLVLLILIVTCAEITIVLCYFQLCSEDY LWWWRSYLTSGSSALYLFLYATFYFFTKLEITKLVSAIFYFGYMLIASYAFFVVTGTIGFYACLWFTRLIYSSVKID
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| PANTHER | 7 | 637 | 631 | 0.0 | – | |
| PANTHER | 7 | 637 | 631 | 0.0 | ||
| Phobius | 18 | 22 | 5 | - | – | |
| Phobius | 23 | 274 | 252 | - | – | |
| Pfam | 54 | 593 | 540 | 1.9E-221 | ||
| Phobius | 275 | 297 | 23 | - | – | |
| TMHMM | 275 | 297 | 23 | - | – | |
| SUPERFAMILY | 275 | 458 | 184 | 2.88E-5 | ||
| Phobius | 298 | 338 | 41 | - | – | |
| Phobius | 339 | 365 | 27 | - | – | |
| TMHMM | 341 | 363 | 23 | - | – | |
| Phobius | 366 | 370 | 5 | - | – | |
| Phobius | 371 | 390 | 20 | - | – | |
| TMHMM | 373 | 395 | 23 | - | – | |
| Phobius | 391 | 410 | 20 | - | – | |
| TMHMM | 408 | 430 | 23 | - | – | |
| Phobius | 411 | 432 | 22 | - | – | |
| Phobius | 433 | 443 | 11 | - | – | |
| Phobius | 444 | 467 | 24 | - | – | |
| TMHMM | 445 | 467 | 23 | - | – | |
| Phobius | 468 | 487 | 20 | - | – | |
| Phobius | 488 | 521 | 34 | - | – | |
| TMHMM | 495 | 517 | 23 | - | – | |
| Phobius | 522 | 526 | 5 | - | – | |
| TMHMM | 527 | 549 | 23 | - | – | |
| Phobius | 527 | 555 | 29 | - | – | |
| Phobius | 556 | 566 | 11 | - | – | |
| TMHMM | 562 | 584 | 23 | - | – | |
| Phobius | 567 | 586 | 20 | - | – | |
| Phobius | 587 | 597 | 11 | - | – | |
| Phobius | 598 | 626 | 29 | - | – | |
| TMHMM | 604 | 626 | 23 | - | – | |
| Phobius | 627 | 637 | 11 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi1g1v0377300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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