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LotjaGi1g1v0377700.2

Overview

Field Value
Gene ID LotjaGi1g1v0377700
Transcript ID LotjaGi1g1v0377700.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description DNA-directed RNA polymerase subunit beta; TAIR: AT3G23780.1 nuclear RNA polymerase D2A; Swiss-Prot: sp|Q9LK40|NRPD2_ARATH DNA-directed RNA polymerases IV and V subunit 2; TrEMBL-Plants: tr|G7J9U6|G7J9U6_MEDTR DNA-directed RNA polymerase subunit beta; Found in the gene: LotjaGi1g1v0377700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:85736738..85737777) extracted from Lotus japonicus Gifu genome v1.2.

ATGCATGGTCAAAAGGGTGTCTTAGGATTTCTGGAGTCTCAGGAAAATTTTCATTTCACAAGCCAAGGCATTGTTCCTGA TATTGTCATTAATCCGCATGCATTTCCCTCACGACAAACTCCTGGGCAACTCCTTGAAGCTGCTTTAGGAAAGGGGATTG CTGGTGCTTTAGAAAAGAGGTTTTCTCGTCGTGGATTATTGAGACATGCTACCCCTTTCTCCACTCCCTCTGTCGAAGCC ATTATGGACCAGCTTCACAGGTGCAGTTTAATCTTGTTATTCAGTTTACTTCAAATGCAGTTTGGCGTGTTGTATGTTAT ATGGGCCATTCACTAGAGGTAGAACTTGTATTTTATCTTCTGCTCTTGCTATGATGTTTACTATTTGCCAAAAATGTCTT CCACGCTGATGGTCTCTTGCATTTTTCTGGGGTCACTTTAAATTTAGGAATTACTTTCCTAGTTCCACTTTGAAGTTGTG TATTTTGTTTTGTTGTTTACTGAGCCTTGATTCACTTTGGTTTTTTGGTATATCACAGAGCTGGGTTTTCAAGGTCGGGA ACTGAGAGGGTATATGATGGGAGGACTGGTGAGATGGTGCGTTCGCTCATATTTATGGGCCCCACCTTCTATCAGAGACT ACACCACATGTCTGAGGACAAAGTAAAATTCAGGAACACTGGTCCGGTTCACCCGCTAACCCGACAGCCTGTTGCTGACC GGAAGCGATTTGGAGGTATCAAGTTTGGTGAAATGGAGCGTGATTGCCTCATAGCACATGGCGCATCAGCAAACCTGTAT GAACGCCTCTTCACTCTGAGTGACTCGTCCCAGATACACATTTGCAGTAAATGCAAAAATGTTGCAAATGTGATCTTAAG GCCGGTGGCTGGTGGCCGTAAAATACGAGGTCCCTATTGCCGCTTCTGTGAATCTGCTGATGACATTGTGGTAGCCAATG TCCCTTATGGAGCTAAGTTATTGAGCCAAGAGCTTTTTAGCATGGGCATTAATCTCAAATTTGAAACTGAACTTTGCTAG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0377700.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCATGGTCAAAAGGGTGTCTTAGGATTTCTGGAGTCTCAGGAAAATTTTCATTTCACAAGCCAAGGCATTGTTCCTGA TATTGTCATTAATCCGCATGCATTTCCCTCACGACAAACTCCTGGGCAACTCCTTGAAGCTGCTTTAGGAAAGGGGATTG CTGGTGCTTTAGAAAAGAGGTTTTCTCGTCGTGGATTATTGAGACATGCTACCCCTTTCTCCACTCCCTCTGTCGAAGCC ATTATGGACCAGCTTCACAGAGCTGGGTTTTCAAGGTCGGGAACTGAGAGGGTATATGATGGGAGGACTGGTGAGATGGT GCGTTCGCTCATATTTATGGGCCCCACCTTCTATCAGAGACTACACCACATGTCTGAGGACAAAGTAAAATTCAGGAACA CTGGTCCGGTTCACCCGCTAACCCGACAGCCTGTTGCTGACCGGAAGCGATTTGGAGGTATCAAGTTTGGTGAAATGGAG CGTGATTGCCTCATAGCACATGGCGCATCAGCAAACCTGTATGAACGCCTCTTCACTCTGAGTGACTCGTCCCAGATACA CATTTGCAGTAAATGCAAAAATGTTGCAAATGTGATCTTAAGGCCGGTGGCTGGTGGCCGTAAAATACGAGGTCCCTATT GCCGCTTCTGTGAATCTGCTGATGACATTGTGGTAGCCAATGTCCCTTATGGAGCTAAGTTATTGAGCCAAGAGCTTTTT AGCATGGGCATTAATCTCAAATTTGAAACTGAACTTTGCTAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0377700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MHGQKGVLGFLESQENFHFTSQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAGALEKRFSRRGLLRHATPFSTPSVEA IMDQLHRAGFSRSGTERVYDGRTGEMVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEME RDCLIAHGASANLYERLFTLSDSSQIHICSKCKNVANVILRPVAGGRKIRGPYCRFCESADDIVVANVPYGAKLLSQELF SMGINLKFETELC
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR20856:SF21
1 253 253 3.3E-145 –
SUPERFAMILY
SSF64484
1 251 251 6.1E-96 –
PANTHER
PTHR20856
1 253 253 3.3E-145
IPR015712
Gene3D
G3DSA:2.40.270.10
1 136 136 2.2E-52
IPR037033
Pfam
PF00562
2 150 149 2.3E-50
IPR007120
Gene3D
G3DSA:3.90.1800.10
137 251 115 2.3E-39 –
Pfam
PF04560
152 250 99 2.4E-30
IPR007641

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003899
Molecular function DNA-directed 5'-3' RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
Subterm of
GO:0006351
Biological process Transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
Subterm of
Part of
GO:0032549
Molecular function Ribonucleoside binding Interacting selectively and non-covalently with a ribonucleoside, a compound consisting of a purine or pyrimidine nitrogenous base linked to ribose.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0377700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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