Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

PF00562

Source: Pfam

Description

RNA polymerase Rpb2, domain 6

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003899
Molecular function DNA-directed 5'-3' RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
Subterm of
GO:0006351
Biological process Transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
Subterm of
Part of

Associated Lotus transcripts 15

Transcript Name Description Predicted domains Domain count
Lj0g3v0053899.1
– RNA polymerase beta subunit [Lotus japonicus] gi|13518436|ref|NP_084796.1|
Domains
16
Lj1g3v1815480.1
– DNA-directed RNA polymerase subunit beta [Medicago truncatula] gi|357466021|ref|XP_003603295.1|
Domains
14
Lj3g3v0965630.1
– DNA-directed RNA polymerase III subunit RPC2 [Medicago truncatula] gi|357514369|ref|XP_003627473.1|
Domains
9
Lj3g3v1906470.1
– PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Glycine max] gi|356548837|ref|XP_003542805.1|
Domains
23
Ljchlorog3v0000380.1
– RNA polymerase beta subunit [Lotus japonicus] gi|13518436|ref|NP_084796.1|
Domains
16
LotjaGi1g1v0377700.1
– DNA-directed RNA polymerase subunit beta; TAIR: AT3G23780.1 nuclear RNA polymerase D2A; Swiss-Prot: sp|Q9LK40|NRPD2_ARATH DNA-directed RNA polymerases IV and V subunit 2; TrEMBL-Plants: tr|A0A0B2RBE2|A0A0B2RBE2_GLYSO DNA-directed RNA polymerase subunit beta; Found in the gene: LotjaGi1g1v0377700
Domains
29
LotjaGi1g1v0377700.2
– DNA-directed RNA polymerase subunit beta; TAIR: AT3G23780.1 nuclear RNA polymerase D2A; Swiss-Prot: sp|Q9LK40|NRPD2_ARATH DNA-directed RNA polymerases IV and V subunit 2; TrEMBL-Plants: tr|G7J9U6|G7J9U6_MEDTR DNA-directed RNA polymerase subunit beta; Found in the gene: LotjaGi1g1v0377700
Domains
11
LotjaGi3g1v0300900_LC.2
– DNA-directed RNA polymerase subunit beta; TAIR: AT5G45140.1 nuclear RNA polymerase C2; Swiss-Prot: sp|F4KD38|NRPC2_ARATH DNA-directed RNA polymerase III subunit 2; TrEMBL-Plants: tr|K7L1D3|K7L1D3_SOYBN DNA-directed RNA polymerase subunit beta; Found in the gene: LotjaGi3g1v0300900_LC
Domains
26
LotjaGi3g1v0315900.1
– DNA-directed RNA polymerase subunit beta; TAIR: AT1G29940.1 nuclear RNA polymerase A2; Swiss-Prot: sp|F4I366|NRPA2_ARATH DNA-directed RNA polymerase I subunit 2; TrEMBL-Plants: tr|I1M0N3|I1M0N3_SOYBN DNA-directed RNA polymerase subunit beta; Found in the gene: LotjaGi3g1v0315900
Domains
28
LotjaGi3g1v0315900.2
– DNA-directed RNA polymerase subunit beta; TAIR: AT1G29940.1 nuclear RNA polymerase A2; Swiss-Prot: sp|F4I366|NRPA2_ARATH DNA-directed RNA polymerase I subunit 2; TrEMBL-Plants: tr|A0A0R0GQW5|A0A0R0GQW5_SOYBN DNA-directed RNA polymerase subunit beta; Found in the gene: LotjaGi3g1v0315900
Domains
28
LotjaGi5g1v0143500_LC.1
– DNA-directed RNA polymerase subunit beta; TAIR: ATCG00190.1 RNA polymerase subunit beta (ChrC); Swiss-Prot: sp|Q9BBS9|RPOB_LOTJA DNA-directed RNA polymerase subunit beta; TrEMBL-Plants: tr|A0A1C7D303|A0A1C7D303_9FABA DNA-directed RNA polymerase subunit beta; Found in the gene: LotjaGi5g1v0143500_LC
Domains
11
LotjaGi5g1v0143500_LC.2
– DNA-directed RNA polymerase subunit beta; TAIR: ATCG00190.1 RNA polymerase subunit beta (ChrC); Swiss-Prot: sp|Q9BBS9|RPOB_LOTJA DNA-directed RNA polymerase subunit beta; TrEMBL-Plants: tr|A0A1C7D4C0|A0A1C7D4C0_ROBPS DNA-directed RNA polymerase subunit beta; Found in the gene: LotjaGi5g1v0143500_LC
Domains
11
LotjaGi5g1v0143500_LC.3
– DNA-directed RNA polymerase subunit beta; TAIR: ATCG00190.1 RNA polymerase subunit beta (ChrC); Swiss-Prot: sp|Q9BBS9|RPOB_LOTJA DNA-directed RNA polymerase subunit beta; TrEMBL-Plants: tr|A0A0F6NF16|A0A0F6NF16_LATLI DNA-directed RNA polymerase subunit beta; Found in the gene: LotjaGi5g1v0143500_LC
Domains
8
LotjaGi5g1v0334100.1
– DNA-directed RNA polymerase subunit beta; TAIR: AT5G45140.1 nuclear RNA polymerase C2; Swiss-Prot: sp|F4KD38|NRPC2_ARATH DNA-directed RNA polymerase III subunit 2; TrEMBL-Plants: tr|K7L1D3|K7L1D3_SOYBN DNA-directed RNA polymerase subunit beta; Found in the gene: LotjaGi5g1v0334100
Domains
30
LotjaGi6g1v0332200.1
– DNA-directed RNA polymerase subunit beta; TAIR: AT4G21710.1 DNA-directed RNA polymerase family protein; Swiss-Prot: sp|Q42877|RPB2_SOLLC DNA-directed RNA polymerase II subunit RPB2; TrEMBL-Plants: tr|V7BQ99|V7BQ99_PHAVU DNA-directed RNA polymerase subunit beta; Found in the gene: LotjaGi6g1v0332200
Domains
31

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 6.67