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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0378700 |
| Transcript ID | LotjaGi1g1v0378700.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polynucleotidyl transferase, ribonuclease H-like superfamily protein; TAIR: AT2G32070.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q9SKZ2|CAF1G_ARATH Probable CCR4-associated factor 1 homolog 7; TrEMBL-Plants: tr|I3SY01|I3SY01_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0378700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:85890369..85891198) extracted from Lotus japonicus Gifu genome v1.2.
TTGTTTGAGAAATGTCGATTTTACAGAAAGGCGATTCGGTTCAAATCAGGGAGGTTTGGAATGATAATTTGGAGGAGGAG TTTGCTCTGATCCGTGAAATTGTTGACGATTTCAGCTATGTAGCGATGGATACTGAGTTTCCTGGTGTGGTTCTTCGTCC TTTAGGTAACTTCAAGAACATCAATGACTATAACTACCAGACTCTGAAGGATAACGTTGATATGCTGAAGCTGATCCAGC TTGGACTTACGTTCTCGGATGAGAACGGGAATTTGCCTACTTGTGGAACGGAAACTCCCTGCATCTGGCAGTTTAACTTT AGGGAGTTTAATGTCAGCGAGGATATCTTCGCGAGTGACTCGATCGAGCTGCTGCGCCAGAGCGGGATTGATCTCAAGAA GATCAATGAGAAGGGGATTGATGTGAGCCGGTTCGGGGAGCTTCTGATGTCGTCGGGGGTTGTGTTGAATGATAATGTGC ACTGGGTTACGTTTCACAGCGGTTATGATTTCGGGTATCTGCTGAAGCTGTTGACGTGCCGTGTGTTGCCTGAGTCGCAG GCCGGGTTTTTTGAGCTGATCAAGATTTATTTCCCCATGTTGTATGATATTAAGCATCTGATGAAGTTCTGCAACAATCT CCATGGTGGATTGAACAAGCTCGCCGAGTTGTTGGAGGTGGATAGGGTTGGTATGTGCCATCAAGCCGGATCGGATAGTT TACTCACTTCGTGTACATTTAGGAAGTTGAGGGATACATACTTCAGTGGCTCCACAGAGAAATATGCTGGTGTGTTGTAT GGTTTAGGTGTTGAGAACAAGACAGACTAA
CDS sequence (LotjaGi1g1v0378700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGATTTTACAGAAAGGCGATTCGGTTCAAATCAGGGAGGTTTGGAATGATAATTTGGAGGAGGAGTTTGCTCTGAT CCGTGAAATTGTTGACGATTTCAGCTATGTAGCGATGGATACTGAGTTTCCTGGTGTGGTTCTTCGTCCTTTAGGTAACT TCAAGAACATCAATGACTATAACTACCAGACTCTGAAGGATAACGTTGATATGCTGAAGCTGATCCAGCTTGGACTTACG TTCTCGGATGAGAACGGGAATTTGCCTACTTGTGGAACGGAAACTCCCTGCATCTGGCAGTTTAACTTTAGGGAGTTTAA TGTCAGCGAGGATATCTTCGCGAGTGACTCGATCGAGCTGCTGCGCCAGAGCGGGATTGATCTCAAGAAGATCAATGAGA AGGGGATTGATGTGAGCCGGTTCGGGGAGCTTCTGATGTCGTCGGGGGTTGTGTTGAATGATAATGTGCACTGGGTTACG TTTCACAGCGGTTATGATTTCGGGTATCTGCTGAAGCTGTTGACGTGCCGTGTGTTGCCTGAGTCGCAGGCCGGGTTTTT TGAGCTGATCAAGATTTATTTCCCCATGTTGTATGATATTAAGCATCTGATGAAGTTCTGCAACAATCTCCATGGTGGAT TGAACAAGCTCGCCGAGTTGTTGGAGGTGGATAGGGTTGGTATGTGCCATCAAGCCGGATCGGATAGTTTACTCACTTCG TGTACATTTAGGAAGTTGAGGGATACATACTTCAGTGGCTCCACAGAGAAATATGCTGGTGTGTTGTATGGTTTAGGTGT TGAGAACAAGACAGACTAA
Protein sequence (LotjaGi1g1v0378700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSILQKGDSVQIREVWNDNLEEEFALIREIVDDFSYVAMDTEFPGVVLRPLGNFKNINDYNYQTLKDNVDMLKLIQLGLT FSDENGNLPTCGTETPCIWQFNFREFNVSEDIFASDSIELLRQSGIDLKKINEKGIDVSRFGELLMSSGVVLNDNVHWVT FHSGYDFGYLLKLLTCRVLPESQAGFFELIKIYFPMLYDIKHLMKFCNNLHGGLNKLAELLEVDRVGMCHQAGSDSLLTS CTFRKLRDTYFSGSTEKYAGVLYGLGVENKTD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 269 | 269 | 2.1E-114 | ||
| SUPERFAMILY | 5 | 267 | 263 | 8.35E-91 | ||
| PANTHER | 10 | 271 | 262 | 5.9E-172 | – | |
| PANTHER | 10 | 271 | 262 | 5.9E-172 | ||
| Pfam | 15 | 137 | 123 | 8.2E-11 | ||
| Pfam | 159 | 243 | 85 | 4.9E-6 | ||
| Coils | 267 | 272 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Poly(A)-specific ribonuclease activity | Catalysis of the exonucleolytic cleavage of poly(A) to 5'-AMP. | ||
| Cellular component | CCR4-NOT complex | The evolutionarily conserved CCR4-NOT complex is involved in several aspects of mRNA metabolism, including repression and activation of mRNA initiation, control of mRNA elongation, and the deadenylation and subsequent degradation of mRNA. In Saccharomyces the CCR4-NOT complex comprises a core complex of 9 proteins (Ccr4p, Caf1p, Caf40p, Caf130p, Not1p, Not2p, Not3p, Not4p, and Not5p), Caf4p, Caf16p, and several less well characterized proteins. |
Expression pattern of LotjaGi1g1v0378700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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