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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0384000 |
| Transcript ID | LotjaGi1g1v0384000.1 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phospholipase D; TAIR: AT3G15730.1 phospholipase D alpha 1; Swiss-Prot: sp|O04865|PLDA1_VIGUN Phospholipase D alpha 1; TrEMBL-Plants: tr|G7JB26|G7JB26_MEDTR Phospholipase D; Found in the gene: LotjaGi1g1v0384000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:86737921..86742513) extracted from Lotus japonicus Gifu genome v1.2.
CTTCATCATAATTCATAAGGACGCTACCGTCATCAGCATTTTCCCTTCGAACCTTTATGCATTTCCATGTAAGAGCACTT AATTACTACATGAAGTTTCCCATTTTCATGCCATTGATTCTAGTTAATATTCCATAAAATCTGCTGCATAAAATGGATGT GTTGTATAAACTTAAACCTATATATAACACTTCTTTTCACAGCACATATAGGGAGAAAGATAGAATAACATAATGTCACA TTTGCTTCATGGGAGGCTCGATGTTATTATATATGAGGTCGATACATTACAAACTCTTAATCGGTGCATGTTCAATATCT GCAACAAGGTGCCTTAACTTAATTGAAAATCTTTGTCTCTTCAATTTGAACTCTACTTGGTATCTGAACTCTTATTATGT TTTTGTTCATTCATATCTTCAATTTTTGTAAACAAGGGTCCAAGTTCCGGCACGGGGAAGAAATTTTTATCCCAACTGAA AAGTTGTTTGCTATGCCAATACCAATGCCAACCTGAGGTATCTTTAATTCTTGACATGAGTTTGTAGCTATTTCACATTT TATTTTATTTTCTTATTGACAAGTTTATTGCATGTTTGAAAACGCGGTAGAAAACTATAATGAATTATATGGTGGATAGA AGCAATTTCATTTACTTCATATTTGGAAGTCAAAATGATAGTGGATAGAAGCAATTTTACTCGGTTCATGTTTGAAAACT CATTCGAAAGACATGGTGCAATCAAAATAATTGTGGATAGAGGCAAAAACCGAGGGAAATTGCTTCTATCAACTATCATT TTGACGACATGACTTTTTGAATGAGTTTCCACACCTGCATAAGATGTGTTTGGAAAGATAACCTAATTAAGGGCTAATGA CCATAAGCACTTATCGCATGACGCATAAACGCTTATTGATAAACAAATCTTAGAAATTTGTTAAAATAAGTTGAAAATAT GCTAAATAAGCATAAACTTCTATTCATAAGCTACTATGAACAACTTATGAAAATAAAACTTATAGGTACACTTGCATGAA CATTTATGTTATAAAATAAACTCAAATAAACTCTTTCAACCGAAACCTTAGCTTAAGTGAGCTGTTCACCCTAATTTTGA CTTCTTTTTCCACCAATCATGCACTAATTCCATGTAATATGTAATGTAAGCAACATGTACATGTGAAATTTCTTTTAAAG TACTAATTCTCAACCATTAAAAACATTTCACAGATTACTGGAATAGGTCTCTATGCAACAGTTGATTTGGATAAAGCAAG AGTTGCAAGGACTAGAGTAATAACAAATCAAACCTCCAGCCCCAAATGGAATGAGACCTTTCACATATACTCTGCCCATT CAATTTCCAACATCATATTCACTGTCAAACAAGCCAACCCTGTGAGTGCAACTCTAATTGGCAGAGCCTATGTCCCTGTT GATCAACTTCTGCAGGGGAACATAGTGGATAAATGGGTTAAGATTCTAGATGTGAATCATAATCCCCTCCAAGGTGGCCC TGAAATCCATGTCAGAATACAGTTTTTTGATGTAAAAAATGATGCAAACTGGTCTCAAGGACTAAGAACACCACAATTTC AAGGAGTTCCCCACACTTTCTTCAATCAAAAACAGGGTTGCAGAGTTACCCTGTACCATGATGCCCATGTTCTTCATGGC TCTGTGCCGTGGATTCCATTGTACAAATCGAAATACTATGTTGCTGGGAAATGCTGGGAGGATATTTACAATGCAATTGT TGATGCTAAGTACTTTATCTACATAACTGGTTGGTCTGTGTACACTGAAATCACCTTGATCAGAGACTCAGAAAATAGAG ACTCAGAAAAAAGCATCACACTTGGGAAGCTGCTAAAGAAGAAAGCTGATGAAGGTGTCACTGTTCTCATGCTTGTTTGG GATGACAGAACCTCTGTTCCTGATTTCAAGAAAGATGGTTTGATGGCAACCCATGATCAGGAAACTGCAGTGTATTTCCG AAACACAAAGGTGCATTGTGTTCTGTGCCCGCGTGATCCTGGTAATGGAAGAAGCATAGTTCAAGGGTTTGAAATCTCAA CCATGTTCACTCATCACCAGAAGAGTGTAATTCTTGACAGCCATTTTCAAGGATCAGAGAAGCGAACCGTTACTAGTTTT GTTGGTGGGATTGATCTCTGTGATGGGAGATATGACACACAAGAACATCCTCTATTTTCATCTCTGAAAACTGAGCATCA TGATGATTTCCACCAGCCAAATTTCCCAGGGGCTTCCATTAACAAAGGAGGTCCAAGAGAGCCATGGCATGATATTCACT GCAAATTGGAAGGACCAATTGCATTTGATGTGTTGTGTAATTTTGAGCAAAGGTGGGATAAGCAAGTTGGAAGGAAGCAA TTTTTACTCTCTTCAAGCTTTTTTGATAAGTATCTTGTAGATAAATCCACTGCAGTAGAGAGAGATGAAAATGAGAAATG GAATGTTCAGTTGTTCAGGTCAATTGATGGTGGTGCTGCTTCTGGTTTCCCACAAGAACCAGAGGAAGCTTCTGAAAAGG GTCTTGTCAGTGGCAAAGATAACATCATTGATAGAAGCATTCAAGACGCATACATAAATGCTATAAGAAGAGCAAAGAAC TTCATCTACATTGAAAATCAGTATTTCCTAGGGAGTTCATATGGTTGGAAATCATCTGATATCAAAGTTGAGGATATCAA TGCTTTGCATCTTATACCAAAGGAGCTTTCACTGAAGATTGTGAGTAAGATTGAAGCTGGAGAGAGGTTTGCTGTTTACA TTGTGATACCAATGTGGCCAGAAGGTGTGCCTGAGAGTGGTTCAGTTCAAGCAATATTGGATTGGCAGAGGAGGACAATG GAGATGATGTATTCTGATATAGCTGAAGCCATTAGGAGAAAGGGAATTAGAGCTAATCCAAGAGATTACTTGACATTTTT CTGCCTTGGAAACCGTGAGGGTAAGAAAGATGATGAGCTTACTCCTACAGAGGCACCAGAGCCAGGCAGTGATTATAGTA GAGCACAAAAGTCCAGAAGATTCATGATCTATGTTCATTCCAAGATGATGATAGGTAAGAGTTTCAAAATACTTATTTCT TCAAACACTTAAATGTTCCGAAACACATTAGAAAATCATTTCACTGTGATTTTATACCATGAATCTAAATATGCACTTAA AGAAGTTTTTAGTGTCAATTAAATGGTCTGATTTATTTTGGTCCTTATTATCTAGTCTTTACAGGTTTGATTATTACTTT GACATATAGTTTTGGTTTCGATATGCGCCTTTTAATATCTCAATATTAATTGGTGATATGACTAACACAGTGATCACCAA TGTCATGTGTCTAGAGTAATCATTCGTGACATATTTCGCTTGCAAATGAGATGAATGGCTAGTTTTTTTTTATAGAAAAG AAATTATACTCTATGAAAATATATCATTTCTTGATCTCTAAGAAATTTGTTGTTAAAAGTGCTAGCTATTATATTTGATT TGGCAACAACATAAGTCATATAACCAGTTAATTGTGGAATATTTATAAACCAGGAGCGAAGTTATTTGTAAAAGTAAGAG AACAAACCCTACTAGTTAGTCGGTATGGACCAAAACCCCAAGTTTGAGTATAAGATGAGAGACTAAAAATTTATTTAAGC ATTTTTATGATATTAAAATGTCTATGATCTTCTATAATTACATTTGTGTGGCACTTTTGAATCATTTGTATTATGTTCTT TTCACATTTGGTAAAGAGCTAACAAATTGTGGTAACTTTTGCTTCCATTTCAGTGGATGATGAGTACATAATCATTGGTT CTGCCAACATAAACCAGAGATCAATGGATGGTGGAAGAGATACAGAGATTGCAATGGGTGCATTCCAACCACGCCATGCC ACATACAATGGTCCCCCAAGAGGACAAATCTATGGATTCAGGCGTGCACTATGGTTTGAGCACCTTGGTGATCTTGGTGA CACAAGCATCTTTAACAATCCAGAAAGCTTGAACTGCATCAATCTTGTGAATCGCCTTGCTGAGAACAACTGGGACATTT ACTCAAAGGAAACATTTGATGAATTCAGAGCATTTCACCACCTCATGCGTTACCCCATAGAAGTGACCAACAATGGAGCC ATAAAAACATTTCCAGGGCTTGAATATTTTCCAGATACAAAGGCTCGGATTCTGGGTTCCAAATCAGAGTACCTTCCTCC AATTCTCACCACCTAGCCACTATCCTAAGTACTCCAGCTTATCATGAGACAGAGTTTAGAAAGTTGAACCATGTAATTGA ATTGCTTAATTATTTGGAGGAGAGTAGATGCAATAACTTGATTATATATTGATGTAAATCATTACTATTACCATTTGTTA TATAAGGCCATGTTTTAAATTGAATAATTAAGGGTGTACATATAGAATTTGCCCAGACCCTTCCAACACATTACACACAC ATTAAGACAGATGTTTGGGAAGGTTAAAAACCATCATTAATGTATATGTCATTAGGAGGCTTTGAGTAAAAGTATAAAAA TAAGAAAATAGCATATTTTGCAACACTTTTTTT
CDS sequence (LotjaGi1g1v0384000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCACATTTGCTTCATGGGAGGCTCGATGTTATTATATATGAGGTCGATACATTACAAACTCTTAATCGGTGCATGTT CAATATCTGCAACAAGGGTCCAAGTTCCGGCACGGGGAAGAAATTTTTATCCCAACTGAAAAGTTGTTTGCTATGCCAAT ACCAATGCCAACCTGAGATTACTGGAATAGGTCTCTATGCAACAGTTGATTTGGATAAAGCAAGAGTTGCAAGGACTAGA GTAATAACAAATCAAACCTCCAGCCCCAAATGGAATGAGACCTTTCACATATACTCTGCCCATTCAATTTCCAACATCAT ATTCACTGTCAAACAAGCCAACCCTGTGAGTGCAACTCTAATTGGCAGAGCCTATGTCCCTGTTGATCAACTTCTGCAGG GGAACATAGTGGATAAATGGGTTAAGATTCTAGATGTGAATCATAATCCCCTCCAAGGTGGCCCTGAAATCCATGTCAGA ATACAGTTTTTTGATGTAAAAAATGATGCAAACTGGTCTCAAGGACTAAGAACACCACAATTTCAAGGAGTTCCCCACAC TTTCTTCAATCAAAAACAGGGTTGCAGAGTTACCCTGTACCATGATGCCCATGTTCTTCATGGCTCTGTGCCGTGGATTC CATTGTACAAATCGAAATACTATGTTGCTGGGAAATGCTGGGAGGATATTTACAATGCAATTGTTGATGCTAAGTACTTT ATCTACATAACTGGTTGGTCTGTGTACACTGAAATCACCTTGATCAGAGACTCAGAAAATAGAGACTCAGAAAAAAGCAT CACACTTGGGAAGCTGCTAAAGAAGAAAGCTGATGAAGGTGTCACTGTTCTCATGCTTGTTTGGGATGACAGAACCTCTG TTCCTGATTTCAAGAAAGATGGTTTGATGGCAACCCATGATCAGGAAACTGCAGTGTATTTCCGAAACACAAAGGTGCAT TGTGTTCTGTGCCCGCGTGATCCTGGTAATGGAAGAAGCATAGTTCAAGGGTTTGAAATCTCAACCATGTTCACTCATCA CCAGAAGAGTGTAATTCTTGACAGCCATTTTCAAGGATCAGAGAAGCGAACCGTTACTAGTTTTGTTGGTGGGATTGATC TCTGTGATGGGAGATATGACACACAAGAACATCCTCTATTTTCATCTCTGAAAACTGAGCATCATGATGATTTCCACCAG CCAAATTTCCCAGGGGCTTCCATTAACAAAGGAGGTCCAAGAGAGCCATGGCATGATATTCACTGCAAATTGGAAGGACC AATTGCATTTGATGTGTTGTGTAATTTTGAGCAAAGGTGGGATAAGCAAGTTGGAAGGAAGCAATTTTTACTCTCTTCAA GCTTTTTTGATAAGTATCTTGTAGATAAATCCACTGCAGTAGAGAGAGATGAAAATGAGAAATGGAATGTTCAGTTGTTC AGGTCAATTGATGGTGGTGCTGCTTCTGGTTTCCCACAAGAACCAGAGGAAGCTTCTGAAAAGGGTCTTGTCAGTGGCAA AGATAACATCATTGATAGAAGCATTCAAGACGCATACATAAATGCTATAAGAAGAGCAAAGAACTTCATCTACATTGAAA ATCAGTATTTCCTAGGGAGTTCATATGGTTGGAAATCATCTGATATCAAAGTTGAGGATATCAATGCTTTGCATCTTATA CCAAAGGAGCTTTCACTGAAGATTGTGAGTAAGATTGAAGCTGGAGAGAGGTTTGCTGTTTACATTGTGATACCAATGTG GCCAGAAGGTGTGCCTGAGAGTGGTTCAGTTCAAGCAATATTGGATTGGCAGAGGAGGACAATGGAGATGATGTATTCTG ATATAGCTGAAGCCATTAGGAGAAAGGGAATTAGAGCTAATCCAAGAGATTACTTGACATTTTTCTGCCTTGGAAACCGT GAGGGTAAGAAAGATGATGAGCTTACTCCTACAGAGGCACCAGAGCCAGGCAGTGATTATAGTAGAGCACAAAAGTCCAG AAGATTCATGATCTATGTTCATTCCAAGATGATGATAGTGGATGATGAGTACATAATCATTGGTTCTGCCAACATAAACC AGAGATCAATGGATGGTGGAAGAGATACAGAGATTGCAATGGGTGCATTCCAACCACGCCATGCCACATACAATGGTCCC CCAAGAGGACAAATCTATGGATTCAGGCGTGCACTATGGTTTGAGCACCTTGGTGATCTTGGTGACACAAGCATCTTTAA CAATCCAGAAAGCTTGAACTGCATCAATCTTGTGAATCGCCTTGCTGAGAACAACTGGGACATTTACTCAAAGGAAACAT TTGATGAATTCAGAGCATTTCACCACCTCATGCGTTACCCCATAGAAGTGACCAACAATGGAGCCATAAAAACATTTCCA GGGCTTGAATATTTTCCAGATACAAAGGCTCGGATTCTGGGTTCCAAATCAGAGTACCTTCCTCCAATTCTCACCACCTA G
Protein sequence (LotjaGi1g1v0384000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSHLLHGRLDVIIYEVDTLQTLNRCMFNICNKGPSSGTGKKFLSQLKSCLLCQYQCQPEITGIGLYATVDLDKARVARTR VITNQTSSPKWNETFHIYSAHSISNIIFTVKQANPVSATLIGRAYVPVDQLLQGNIVDKWVKILDVNHNPLQGGPEIHVR IQFFDVKNDANWSQGLRTPQFQGVPHTFFNQKQGCRVTLYHDAHVLHGSVPWIPLYKSKYYVAGKCWEDIYNAIVDAKYF IYITGWSVYTEITLIRDSENRDSEKSITLGKLLKKKADEGVTVLMLVWDDRTSVPDFKKDGLMATHDQETAVYFRNTKVH CVLCPRDPGNGRSIVQGFEISTMFTHHQKSVILDSHFQGSEKRTVTSFVGGIDLCDGRYDTQEHPLFSSLKTEHHDDFHQ PNFPGASINKGGPREPWHDIHCKLEGPIAFDVLCNFEQRWDKQVGRKQFLLSSSFFDKYLVDKSTAVERDENEKWNVQLF RSIDGGAASGFPQEPEEASEKGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSYGWKSSDIKVEDINALHLI PKELSLKIVSKIEAGERFAVYIVIPMWPEGVPESGSVQAILDWQRRTMEMMYSDIAEAIRRKGIRANPRDYLTFFCLGNR EGKKDDELTPTEAPEPGSDYSRAQKSRRFMIYVHSKMMIVDDEYIIIGSANINQRSMDGGRDTEIAMGAFQPRHATYNGP PRGQIYGFRRALWFEHLGDLGDTSIFNNPESLNCINLVNRLAENNWDIYSKETFDEFRAFHHLMRYPIEVTNNGAIKTFP GLEYFPDTKARILGSKSEYLPPILTT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 826 | 826 | 0.0 | – | |
| PANTHER | 1 | 826 | 826 | 0.0 | ||
| PIRSF | 1 | 826 | 826 | 0.0 | ||
| CDD | 4 | 164 | 161 | 9.7062E-55 | – | |
| SUPERFAMILY | 5 | 166 | 162 | 5.06E-19 | – | |
| SMART | 8 | 140 | 133 | 4.4E-8 | ||
| Gene3D | 61 | 174 | 114 | 2.0E-13 | ||
| Pfam | 63 | 142 | 80 | 3.5E-13 | ||
| SUPERFAMILY | 168 | 449 | 282 | 3.14E-27 | – | |
| CDD | 219 | 392 | 174 | 1.35788E-85 | – | |
| Pfam | 342 | 378 | 37 | 9.7E-8 | ||
| SMART | 342 | 378 | 37 | 0.1 | ||
| ProSiteProfiles | 342 | 378 | 37 | 9.73 | ||
| Gene3D | 482 | 712 | 231 | 1.6E-21 | – | |
| SUPERFAMILY | 500 | 738 | 239 | 3.31E-28 | – | |
| SMART | 669 | 696 | 28 | 1.9E-8 | ||
| ProSiteProfiles | 669 | 696 | 28 | 15.45 | ||
| Pfam | 670 | 696 | 27 | 1.8E-7 | ||
| Pfam | 745 | 816 | 72 | 1.7E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Phospholipase D activity | Catalysis of the reaction: a phosphatidylcholine + H2O = choline + a phosphatidate. | ||
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Phosphatidylcholine metabolic process | The chemical reactions and pathways involving phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline. They are important constituents of cell membranes. |
Expression pattern of LotjaGi1g1v0384000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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