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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0385400 |
| Transcript ID | LotjaGi1g1v0385400.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cellulose synthase; TAIR: AT4G32410.1 cellulose synthase 1; Swiss-Prot: sp|A2Y0X2|CESA1_ORYSI Probable cellulose synthase A catalytic subunit 1 [UDP]-forming]; TrEMBL-Plants: tr|V7ATW9|V7ATW9_PHAVU Cellulose synthase; Found in the gene: LotjaGi1g1v0385400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:86908081..86913779) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAAGCAAACGCCGGAATGGTTGCTGGATCCCACAAGCGGAACGAGCTTGTTCGGATTCGTCACGATTCTTCTGACAG TGGGGTTAGTTAGTCTTTCAAACCAAATCTCAATCATCGATTACGATTACGATTACGATTTCTTCTTACACTGCCTTTTC AAGTTCAGATCAGATCTATGTGGTCACTGTTGATCTTCAATTTTTCTTTCTTAATTGTCAATTTATATATAGATAGGTTT TTTGATTCTAATTTGGTTTAATGTAATGCATATGCATCGCTGCAGCCGAAACCGTTGAAGAATTTGAATGGACAAATCTG TCAAATATGTGGTGATAATGTTGGAATTTCCGCTACTGGTGATGTCTTTGTTGCTTGCAATGAGTGTGGATTCCCGGTTT GCCGTCCGTGTTATGAATACGAACGGAAGGATGGGAATCAGTCTTGTCCTCAGTGCAAGACGCGGTATAAGAGGCAAAGA GGTCGGTTAGTTAGTTAGCTTGTTTCATTTTGATTGATCAGATTTTGTATCTTAATTTTGAAATTGACTAGAGTAGTTGA ATCTGGATTTCAGGGAGTGCACGAGTGGATGGAGATGAAGATGAAGATGATGTTGATGATCTAGAAAATGAGTTCAATTA TGTTCAAGGGAATGCTAAAGCTAGCAGGCAGTGGGAAGAAGGTTCTGACCTTTCTTTATCTTCGAGACGTGATCCTCAGC AGCCGATTCCGCTTCTCACCAATGGCCAAACGGTAATCTATTGAACTGTTGTTGTCTTTGCAATGTGGTTTCTATTTATA GATCTTAAGTTAGATTTTGTCTGCGTGTTTTTACAGGGAGACATAGAAAGTTATTTCCTAAACTAGATCTCTCTATCACT TTCTCTTGTTACTAAGTTATTGCCTGTAGTCTTGAGCTGTGATGAAGTGAATGACAAACAGCAAAATATTTTATGATGAA CTTCTTTATGCAATGTAATTAATGTTATATATGTTCCTATCTGGGAGTATATTTCATGAAATAGTGCATGTATTTTATTT TTGTCTTTCACTGACTGCCAGTGCTCAGTTGTTCACTGATAATCTGCTCTTTCTATTTTCTACTCCATGTTTCAACTTTC AATACTGTAACTAATTGTTTCTTGATATTGTCAGGTGTCTGGCGAGATTCCATGTGCTACACCCGATACTCAATCTGTCC GAACTACTTCAGGTCCGTTAGGCCCAGGTGATAAAGCTCACTCACTTCACTATACGGATCCAAGGCAACCAGGTATGTAG TTAGCTTGAAGCGATGCTGTAACGAGATATTTCATAGTTCTTACGGATTTTCGATTGACTATGTCTTCATTATTACAGTT CCAGTACGAATTGTGGACCCATCAAAGGACTTAAATTCTTACGGTCTGGGAAATGTTGACTGGAAAGAAAGAGTTGAAGG TTGGAAGCTCAAGCAGGAGAAAAATATGGTACAAATGACTGGTAAATACCCTGAAGGGAAGGGAGGAGACATTGAAGGGA CTGGTTCTAATGGAGAAGAACTTCAGATGTAAGCCAGTTATGCAATTTTGATGATTCTTAATGACTAGATGATCCTGAAT GGAATTATTGCAGCAATCTTTGTGTATTCAAGTTAGACAATTAAGTTGTTGTTCTGGGAGACAAAATGTAATTTAAAATG GAATCTTTGTGTATGCAAGTTAGACATTTTAACTTGCATTATGTCTCCTTGTTTTATTGAACAGATATATTATTAGTTGC TCATGGTTGTATTGCACCATGTTGATTTATTTTTTGGGCTTCCTAAGTCTAGATTTTTTTTGTTCATAACTTACAGGTAG AATATAGAAGCTTTCAATATTCATGAAGTTTGAATTACATTGCTTTTATTTGATGTTAAGCGGTCAATTGATTTTATTCT TGACAGGGTTGATGATGCTCGACAACCTATGAGTCGTATAGTGCCTATTTCTTCAACTCAGATAACCCCTTATCGTGTTG TTATCATACTCCGGCTGATTATTCTTGGCTTTTTCTTACAATATCGTGTAACTCACCCGGTAAAAGATGCATATCCGCTG TGGATGACATCAGTTATCTGTGAGATTTGGTTTGCCTTCTCCTGGCTCTTGGATCAGTTTCCAAAATGGTCTCCCATTAA TCGTGAAACATATCTTGAGAGGCTTGCTCTAAGGTTTACATTGTTCCTTATCCATGTTCTATTGGGCCTAGCTTCTTTAT TTACCTATGATATGTCATTTTTATTTATTTCACTAATCCTAGTTTCTCTTGTTTAGATATGATCGTGAAGGAGAGCCATC GCAGCTGGATCCTGTTGACGTTTTTGTTAGTACAGTGGATCCTCTCAAAGAGCCGCCTCTTATTACTGCAAACACTGTTT TGTCTATACTTGCTGTTGATTACCCTGTGGACAAGGTTTCCTGCTATGTATCAGATGATGGTTCTGCTATGTTGACCTTT GAAGCCCTATCAGAAACAGCTGAGTTTGCGAAGAAGTGGGTGCCTTTTTGCAAAAAGCACAATATTGAGCCAAGAGCCCC CGAGTTTTATTTTTCCCAGAAGATTGATTACTTAAAAGACAAGATTCAACCCTCTTTTGTAAAAGAGCGACGGGCAATGA AGGTTGTTCTTGAAGCATTGTTTCTGTTTCCAATTCAATATATCTAGATATCATGTTTTAATGTGCCAAGTGGAAACTTT ATTGAGTGTTGACAAATCAATATTTTTTTTGTAAAAATAAGGCTTGTGAAGTCTTCTATGGTGGCCTGTTGGGGTATGTG GGTCCAGAAATTTAACTATAGATTCTAATGTTTAACAGAGAGAATATGAAGAGTTCAAAATACGAATCAATGCCCTTGTA GCAAAAGCTCAGAAGGTGCCAGAGGAAGGCTGGACAATGCAGGATGGAACTCCTTGGCCTGGAAATAATCCTAGGGATCA TCCTGGAATGATTCAGGTCTTACCATTTTTTCCGTAGTTTATATAGTCTCTACCATTTGTAATGTTGTCTAGGTAGTTTA ATATTTTGTTTTATGCAGGTGTTTTTAGGTCATAGCGGTGGGCTTGATACAGATGGAAATGAGCTTCCTAGGCTTGTTTA TGTTTCTCGTGAAAAGAGACCAGGCTTCCAACATCACAAGAAGGCTGGAGCTATGAATGCTTTGGTTTGTCAAGCTGAAA CTTCTAATTTTATTTGTTTTATGGCTTTACTGATTAATGCTTTTCTTTTTCTTTAAAGCTGTGTCTTGATTTGCTTCTTT CAAGTTTATGGCTATTATGTCGCTGTATGTTTTGCTCATATGCTGTGATTCAACATAGATCAACGATGTGTTATAGACAG TGTAGCAAATTCTAAAGCTTTTTTAGGATGTCAATGATGTTGCTAGTTGATCATATGTGGATTTTTTGTATGTAAGAATT ATTATTCTTCCTTTCTGCCAACCAATCGAGCATTTCCTTGCTGTGCCATAATTGGTATAATAGCTACGCACTTTTTTACT AGTAAGCAATTTTGGGCATATCTAACCTTGGTTTATCTTGTGTTATGCAGATCCGAGTTTCAGCTGTCTTGACCAATGGT GCATATCTTTTGAATGTTGATTGTGATCACTATTTCAATAACAGCAAAGCTCTTAAAGAAGCGATGTGTTTCATGATGGA CCCTGCTTATGGAAAGAAGACATGCTATGTGCAATTCCCTCAGAGGTTCGATGGCATTGACTTGCACGATCGATATGCCA ATCGTAACATTGTGTTCTTCGATGTAGGTCTTACTTTATTTAATAATTTTTCTAAGTAGCAACAGAGAAAATAATTATTT TGTTGCGTTGCTCTCCACTGCGTTGGCTAAATTTCATTTCTTTTTTCTACCTGTTAGATCAACATGAAAGGTCAGGATGG TATTCAAGGCCCAGTCTATGTGGGAACTGGTTGCTGTTTCAATAGGCAGGCTTTGTATGGTTATGATCCTGTTTTGACTG AGGAAGATTTGGAACCTAATATTATTGTCAAGAGTTGCTGGGGTTCTAGAAAGAAGGGCAGGGGTGGTAATAAGAAGTAC ATTGACAAGAAGAGAGCAGTTAAAAGAACCGAATCCACCATTCCCATATTTAATATGGAAGATATAGAGGAGGGTGTTGA AGGTATGCAATTATGAAAAAGTCTCTGGTAACTCCCTTATTTATGGATGTTTATGCATGTAGAATTTTGCATGTTGATTA CCGTGTAATTTCATGATTCATTGTGCCCCCATTTCACTGATCAAATCCATATGTAATTTATACTAGCCATAGCTTGTTTG CCAGGCATTTATAGTGTTGTCTGGAAACTGAGATGACAATATCTTGTATCCTTGTTGATATGTATATCCTCCTCTTTCAG GTTATGATGATGAAAGGTCACTTCTCATGTCTCAGAAAAGCTTGGAGAAGCGTTTTGGGCAATCTCCAGTTTTTATTGCT GCCACCTTCATGGAACAGGGTGGCATTCCACCTTCAACCAACCCTGCAACTCTTCTTAAGGAAGCAATTCATGTCATCAG TTGTGGTTATGAAGACAAGACAGAATGGGGCAAAGAGGTGAGATTTGTATAAAGAAATATGAGATTATGAGATTAATAGG AAGCTTGTTTAGTTATTAATTAAACATTTTCTGACTTCGCCAGATCGGATGGATCTATGGTTCTGTGACGGAAGATATCT TGACTGGGTTTAAGATGCATGCTCGTGGTTGGATTTCCATTTATTGCATGCCACCCCGCCCAGCATTCAAGGGTTCTGCT CCCATCAATCTTTCTGACCGTCTCAATCAGGTGCTTCGTTGGGCCTTGGGTTCTATTGAAATCTTTATGAGCAGGCATTG TCCCTTGTGGTATGGCTACAACGGGAAGTTGAAGGGCCTCCAGAGGCTTGCTTATATTAACACTGTTGTCTACCCCTTCA CCTCAATCCCATTGCTTGCTTACTGTACACTCCCTGCTTTTTGTCTCATCACAAATAAATTTATTATTCCAGAGGTAAGT GATTTCTTCTATCTCATTTCTTGTTGATAAATCTATAGCTTCTGATAGTGGATCTGAGGTTTCTGAATCTTATGCAGATA AGTAACTTTGCCAGCATGTGGTTCATTCTCCTTTTCGTCTCCATTTTCACTACTGCAATTCTTGAGCTCAGGTGGAGTGG GGTCGGTATAGAAGATTGGTGGAGAAATGAACAGTTCTGGGTTATTGGAGGAACATCAGCACATCTCTTTGCAGTGTTCC AAGGGCTTCTTAAAGTGCTTGCTGGGATTGATACAAATTTCACTGTTACATCTAAGGCAAATGATGAAGATGGCGACTTT CAAGAGCTATATATATTCAAATGGACATCACTTCTCATCCCTCCTACAACAGTGCTTATTGTGAATTTGGTAGGGATAGT GGCTGGTGTGTCCTTTGCCATAAACAGTGGTTACCAATCTTGGGGTCCACTATTTGGTAAGCTATTCTTTGCTATCTGGG TCATTGCACATTTATACCCATTCTTGAAGGGTCTCTTGGGTAGGCAAAATCGTACCCCCACCATTGTTATTGTTTGGTCC ATTCTTCTTGCTTCAATATTCTCCTTGCTGTGGGTGAGGATTGACCCCTTCACCACAGATTCCAGCAAAAGCAATGGTCA ATGTGGCATCAACTGTTAG
CDS sequence (LotjaGi1g1v0385400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAGGTCAGGATGGTATTCAAGGCCCAGTCTATGTGGGAACTGGTTGCTGTTTCAATAGGCAGGCTTTGTATGGTTA TGATCCTGTTTTGACTGAGGAAGATTTGGAACCTAATATTATTGTCAAGAGTTGCTGGGGTTCTAGAAAGAAGGGCAGGG GTGGTAATAAGAAGTACATTGACAAGAAGAGAGCAGTTAAAAGAACCGAATCCACCATTCCCATATTTAATATGGAAGAT ATAGAGGAGGGTGTTGAAGGTTATGATGATGAAAGGTCACTTCTCATGTCTCAGAAAAGCTTGGAGAAGCGTTTTGGGCA ATCTCCAGTTTTTATTGCTGCCACCTTCATGGAACAGGGTGGCATTCCACCTTCAACCAACCCTGCAACTCTTCTTAAGG AAGCAATTCATGTCATCAGTTGTGGTTATGAAGACAAGACAGAATGGGGCAAAGAGATCGGATGGATCTATGGTTCTGTG ACGGAAGATATCTTGACTGGGTTTAAGATGCATGCTCGTGGTTGGATTTCCATTTATTGCATGCCACCCCGCCCAGCATT CAAGGGTTCTGCTCCCATCAATCTTTCTGACCGTCTCAATCAGGTGCTTCGTTGGGCCTTGGGTTCTATTGAAATCTTTA TGAGCAGGCATTGTCCCTTGTGGTATGGCTACAACGGGAAGTTGAAGGGCCTCCAGAGGCTTGCTTATATTAACACTGTT GTCTACCCCTTCACCTCAATCCCATTGCTTGCTTACTGTACACTCCCTGCTTTTTGTCTCATCACAAATAAATTTATTAT TCCAGAGATAAGTAACTTTGCCAGCATGTGGTTCATTCTCCTTTTCGTCTCCATTTTCACTACTGCAATTCTTGAGCTCA GGTGGAGTGGGGTCGGTATAGAAGATTGGTGGAGAAATGAACAGTTCTGGGTTATTGGAGGAACATCAGCACATCTCTTT GCAGTGTTCCAAGGGCTTCTTAAAGTGCTTGCTGGGATTGATACAAATTTCACTGTTACATCTAAGGCAAATGATGAAGA TGGCGACTTTCAAGAGCTATATATATTCAAATGGACATCACTTCTCATCCCTCCTACAACAGTGCTTATTGTGAATTTGG TAGGGATAGTGGCTGGTGTGTCCTTTGCCATAAACAGTGGTTACCAATCTTGGGGTCCACTATTTGGTAAGCTATTCTTT GCTATCTGGGTCATTGCACATTTATACCCATTCTTGAAGGGTCTCTTGGGTAGGCAAAATCGTACCCCCACCATTGTTAT TGTTTGGTCCATTCTTCTTGCTTCAATATTCTCCTTGCTGTGGGTGAGGATTGACCCCTTCACCACAGATTCCAGCAAAA GCAATGGTCAATGTGGCATCAACTGTTAG
Protein sequence (LotjaGi1g1v0385400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKGQDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKSCWGSRKKGRGGNKKYIDKKRAVKRTESTIPIFNMED IEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSV TEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEIFMSRHCPLWYGYNGKLKGLQRLAYINTV VYPFTSIPLLAYCTLPAFCLITNKFIIPEISNFASMWFILLFVSIFTTAILELRWSGVGIEDWWRNEQFWVIGGTSAHLF AVFQGLLKVLAGIDTNFTVTSKANDEDGDFQELYIFKWTSLLIPPTTVLIVNLVGIVAGVSFAINSGYQSWGPLFGKLFF AIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRIDPFTTDSSKSNGQCGINC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 455 | 455 | 1.6E-284 | – | |
| PANTHER | 1 | 455 | 455 | 1.6E-284 | – | |
| ProSiteProfiles | 1 | 17 | 17 | 5.0 | – | |
| Phobius | 1 | 239 | 239 | - | – | |
| Pfam | 1 | 453 | 453 | 5.5E-235 | ||
| TMHMM | 239 | 261 | 23 | - | – | |
| Phobius | 240 | 261 | 22 | - | – | |
| Phobius | 262 | 272 | 11 | - | – | |
| Phobius | 273 | 296 | 24 | - | – | |
| TMHMM | 273 | 295 | 23 | - | – | |
| Phobius | 297 | 307 | 11 | - | – | |
| Phobius | 308 | 327 | 20 | - | – | |
| TMHMM | 310 | 332 | 23 | - | – | |
| Phobius | 328 | 360 | 33 | - | – | |
| TMHMM | 358 | 380 | 23 | - | – | |
| Phobius | 361 | 384 | 24 | - | – | |
| Phobius | 385 | 389 | 5 | - | – | |
| Phobius | 390 | 412 | 23 | - | – | |
| TMHMM | 390 | 412 | 23 | - | – | |
| Phobius | 413 | 423 | 11 | - | – | |
| Phobius | 424 | 444 | 21 | - | – | |
| TMHMM | 425 | 444 | 20 | - | – | |
| Phobius | 445 | 462 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Cellulose synthase (UDP-forming) activity | Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1). | ||
| Biological process | Cellulose biosynthetic process | The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. |
Expression pattern of LotjaGi1g1v0385400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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