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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0386200 |
| Transcript ID | LotjaGi1g1v0386200.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Plant tudor-like RNA-binding protein; TAIR: AT4G32440.1 Plant Tudor-like RNA-binding protein; Swiss-Prot: sp|Q08A72|EML4_ARATH Protein EMSY-LIKE 4; TrEMBL-Plants: tr|I1JUF7|I1JUF7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0386200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:86959035..86965341) extracted from Lotus japonicus Gifu genome v1.2.
CACCCGCAAACCAAAAATTCGGATTTCTCTTTTCACTCTTCTCTTGTTGTTGTTCATCGAGTCTCGGAAACCCTCATCGC TAGGTTGCTTGTGGTTGATCACCGAGTCTCGGAAACCCTCGTTCCTTTAAAACGAGGCAAAGAGACTCGCTGCGATTCTG CAATCGTTGATCACCGTCGAAAAGGTCAGTGTTCATCTTCTTCATCTGTTCTGTTTGATGCTATCTTTTGCGATTTACGT TTTCCAATTTCTTCAATTCGCGACGTGTTTGAATTTCGATTTCGATTTCGTTTTATCGCTTTCTAGTTCCTGATTCTATG CTTATTTTGATTCGTTTGCCTTTCTGTGTATTGTACCCGTTCTGGATTTTGAATCACCTTTCGAATAACCCTAGTTTCAT TTGTATTTGGGGCAAAGAAATTCAGTATTTGTAGCTATTTACATTCAGTAGCCAATTTCCGTTGAGTTTTCCGCTCCAAT AAATTATTGTTTTTGGTTAGTAAATTGTTCTCTTGTAAATTTTCATTCCATTAACACATGTTGATTTGAGTGATGATTGT TTTTTAGCTTCTAGGGTTATAGTTTACAATTGTACTGGAAGGATTTCTTGAAGTTGTGAAAACAAACAATAAATCTGTAA CCCTATATGTGTACCGAATGTTAATAATTGTGAGATTTTGTTTCGTGGGGACTAATAATGTTCATGAATGTCACAGGTTG GAGTTTGAATTGATTTGAAGTAGTCACAATGAGATTCAAGAAGGGAAGTAAGGTGGAGATCCTAGGCAAAAACGAAGGGC TTCCTGTGGAATGGCGTTGTGCTCGAATTATTTCTGGTAATGGGCGCACTTACAGTATCCAGTATGACTGTTCTAGCATG ACAAGTGAGGAGGCCAGTGTTGATAGGGTTCAAAGGAAGGCCATCAGACCATGCCCCCCTCTTATTCAAGGCACTGGGAG CTGGAAATCTAATGATTTTGCGGAGGTTTATGATGCTGGTTCATGGAGAGCTGCTACTGTTTTGAAGTCCATAGGCCAAG ACTTTTACTTGGTTAGGTTGTGGTTGTCTTGCAAGGAGTTTAAGGTGCACAAAGTTGACATGAGGATACGCCAATTTTGG CAAGATGATCAATGGACCCAAGGGATCCTTAACCCAGTGGTAAATTTCGACTTTCTTTTATAAGTGTCAATCGTTGATTA TTATCTTATTTTTATTTTATTCCTTTTATCAAGTATTGTTAAAGTTTTGGCATTTGTGTAGTGTTTGTTAGATTATAACC GAATTCCAACCCATTTATATCGTTTTACATGTTATTATTGATATTGCTAATTGCTTCTAAATGGAGAAAGTTTTTATTTG CCATGATTACTCTGAAATTTGTTTCCACTCCGTGTCCTTATATTTTCTGGTGCTTTTCACAGGCCCTAGGTGAATCTGCA GCAGGGAAGACTAGGCGGAATTTGATTTCAAACAACTATACGGTGATGCCTGAAGTGCAACAAGCTAGAAATTCTTGTTT ACCAGGATCAGATGCCAGTGATCTCCTGGAGCCTCATCTAACCCCAACAGTGAAGAGAGTGTTCCCTTATGGCTCCTCTC TTGCTGAGGATTATCCCAGGAAAAGGAGGCTTGTTGTCAATATGGGTGAGTGTGACAGAATCAGAGCACCAACCACAGCC CCATTGCTGGAAAAGGTAGATGCTATTGCTTACCCACAAAATAATATGGGTGAAAAATACTTGCATTCTTCCTTTACTCA TAATATCAAACAATATTATGAAATTAGGGAGGACACTCTTTTTGAAAGAATTGAAGAACCAGATTACTCTTGTGGTGGTC TGAGTTCAGTTGGCAGTTGTAGTGTGACAAGTTGTAGTTCAAATAAATTTTTCAGTGATACATTAGCAGGTCCTTCCCAG TATGAAGATGAACTTTGTAGTGATGCGGAATCTGTAGATGTTGGAAATGTGGATGGGGACAAAGGATGCACCGATTCTCC GAAAGAGGTTGTACCCGAAAGAATTCATAGGTTAGAGTTGCATGCTTATTACAGTACGTTAGAGGCAATGTATACTTCTG GTCCTTTAAGTTGGGAACAAGAAGGATTATTGACTAATCTTCGTATTTCACTCAATATTTCAAATGATGAGCATTTGATG GGGATAAAGAAATTAGTATCTAGTCAGCATTTCTAAATGTTTAGACAGGATAGGTTGTCGTACAATTGTTTAAAAAATTT ATGTACAGCATTATTTGGTTTTGTGCTAGAGAAGATATTCTTCTGAGTCATCCTATGTTATTCATTCTGTATTATGGAAA CTATGATGCTACAGTTATTATGAACTGATCAAGTTATATGGCACTTTGTTTATTTGTCTTCTTTTAGTTTATTAGGACTT GTAGTGTTAATTTATGTTTTTATGTCCTTTTCAATATTTAAAGTTTAGCTTGCATACCCCCAGTGATTCATAGCTATGAG AGATTCGTCTGCTTGTCTCTTTAATTTATTTATACTGCTTATGTTTATCATTTAATTTCCCAGCAATGATTAACAACTTG ATGATTATGACTTTGACACCTACTTCACAAAACTACGATTAAAACTAAGATATTGTTTAATTTGGCAAAGTTTTATTAGC TGTCTAATTGTAGCATGAGCTTTTCCACCGTTTGATTGTTATTGATGAATCAACATAATTTTCCAGGGCCAGGGTAGGAG GCTTGCTTGCCTTGCTTCCAATGGCTAAATACAATGGCTAGGTTTGCCTCTTTTCTCTCCGCAAATTAATTGGTGACATC TACCAATGATTTTCTTGCAGAGATAAGAAATTTCTGACTACTGTTTGCTCTGTTTCCTAATAATATAGTTTGTTTCAGGT CTGCTTTGAACTCTCGTCATGTCATGTCAGAACATGAGCTTTTTTAAATCTGCGGACACAGCACTTACATGGAAGATCCT CTTTAGTACATATGATCAGATAACTGCTGTTTATTTCACTAGTTTGCATGCTGTGTCAATTATCTTCGTGTGACTATAAC ACTTTATCATGTAAGTTGAAAAGCAAGTTATGCTAGGATGTAACAGTGTTATTAGGGTTGTTAATTGTGCTGCCACATGG TGTCAGGTGATCTCCAAGTGATTTAAGGGCTGTACAGTGCGACTCTAAATCACTGTTACTTTGTTTGATGGGTAAAAACC ATACTCCGTCCCCATTTTTGTGTGACCCACATAGTTCTTAAGGGTTCTTTGGTCATTTCTATAGTGCACCCACTCCTCTT AGGGTTTTTACCCTAAGTCTCCCACTCTCCTTTGTTCGTGAAATGCATCATCTTCACGAATGTTTTAAAAATTAGACCGG TGTTTGAATCGGAGAAGGCATTGATTTAGAGTTTTTTTGTTCGGCCACAGTTATCTGTTAATAATTAAATATATGTTTTT AATATCATAATATTTCAATTGACTAACCAACGTGAATTTAAAAATATCAAGATATATAAATCTTTAAATTAATATAAATA GGCCTTATTGTATTTTGTAAGAAAAAGAAATAATAATAGGTTAAATGGTGCTCACTTTTACAGAAATATTATATATTTGT TCTTTCTATTTCTTGAGAATTGTTTTGTATTGAATATAGATTTTGAAAAATTTAAAAAGACTACAATCCTGTTCTTTAGC GTTGTTTTTAATTGGTTTCAACCGTTTTTAGACTAGGTTGACCGGTTCTCTACTAATTTCTTTGCCATCTGAATTTTTGA CCTGACTAGTTCACTGGTTGTCCAATGGAGTCGACAAGTCCGGTCCAATTTTTCAAACATCGGTCTTCATTTCCCAATCC ATTATCCATTGGTTTGGTTGTCTCTCTTCTATCCCGTTCTTCCATTTTTTTTAATGTTTGTTTGTGTGGTGTATTACTGA CTGTATTCTACCCTCCACAGCCCTCTGTTTTCGCATCTCTGTGACCTCTCTTGTTATGTTTTTTTCTTTTTTGTTGTATA TTTTGGTGAATGTGCATTTGTTTCTATGACTTCTTATCATTATTGACTAATATGTCTTTAATTTATGGTAACTTTTTTTT TTTATCTATGTACAATTTAGAAAAAGGTTAGGGTAGCTCTTGTAAATAGTTAAGGCAATTGTATGTTAGATAGGTTGCGT GAGTAAGTGTTATTATACCTATGTCTTGCTATGGTAAATTATTTTGAAATTAAGGTTGAGTTTTTTTGAATTTTCTTTTG CTGCCATGTGTTCCGGTCCACAGGAAAAGGTGTACATGCTTCTGAAGCAAGCCCCCTTCGTGGCCTCACGATATTGTTGG CAGGTACTGGATGAAAATTGTTTAACACTTGTAGGATCAGTTTTGGATTTTATGTTGAAAATTTACCGCATCTAATTATT GTTTAAGAAACACAAATAAGCATGCACTTGTGTCTCCAAATATCTGCTTTTCATTTTTCTCGCTTGAGCAGTTTCTGTGC ATGTAGATATCTCTTCAGATGCTCAAAATGTCTGACTTCACTTTTTTATTCCATTATCAAAGATTCTCAGTTTGTCTTTT TTCTATTGATTTGGATTCTGACACCGCATTATTTTGTTAATTTATTTTTTCATTGAGGCTGAGTTCATTCTGTTTTTCTC TCCAATTAATAATGATGCTTGTAGAGTTCACCACTGTCTAATTAGATGCCATTGCTTTCCTGGTAAGTAACTTTTTGCTA TCAGATTTTTTTTTTAAACTTTAGCTTGTAGCCTCGATATTGATGAATAAAACCCTGTACTTGTAAATATATTCTAAAAT TCATCTAGGTTAGTTATTCTTGTTACGCAGATTTTTTTTTCTGTTTATACTCTTAAGACTCTTTTTATTACTGCAGCTAA TTAAGCTTTGACTTGCATATATCAAAAGGCTATTGGAAAGGTATCATAAGATGATACGAACAAGTAACTTAGATGCATAC TGAATTTGTTTACCTGCATTTCACATATAAAGTCTGACTTGTTTTCTTAATATGAATCATGGCTCTCTATTTAGTATTTA CAGTTCAAACATCAGTGCTAACCCTTCAATTGACATTATATAACAATGACGACAATAACAAAAACATAAACAAAGACCTT TTCCTACAAGGTAGGCCGGGTACATTAATCATAGTGTAATGCCTTGTCATGTAATAAGGCGCAAAAAATCCTCGTCATTG TCAAACAAATTTAACCATGCTGCTATATCATCTTTGGACCTGCTATATAATGCCAAAAAGGTATTTAAAATATACAACAT TTGCATACAAATGCAGCTGCTAGCGTAAAAAAAGAGATTTACTCGTGTTATGAGAATGTTGATAGTATTATCCTAAGTTG ATATAATTGCTGTCATCTATTTACTAAGAAATTTAGCGCTTAGTGCATGAGATTATCTTGTCCTAATTCATACAGATTTG CTCGTGTTTGTTCAGGGTGTCTGGAAACCCAATGTTTTTTTTCCTTCACGTTTAGGGATTTTGAGGATTGAAAGTGTATT CAAACATGTTATTTATCTCAGCTGGTTGTCAAGGGCACCTATCTGAGTTGGCTGTCAAGTGCACATGGGTTACAATTTTT GTTTTTTGATTTAGTACCAATATTTGGCTCGTAAGTTGAGTTTGTAATTTATTTGAGTTCATGTTCTGTATATCTTTAGA ATAACGAAACCTTCTATTTCTAGTCACAACAATTATCATTATGCATTTTTTTTTTACTTGTTTCAAAGGTGTGCGAAGAG TAAAAGCTCTTTACTAATAAACTGGGAATATAACAGAACAAGAAGCCATGCAAACAATGATTTTTGTTATTGAAATTTCA GGTATTGAGAGAAATAGCAATTGAACTGAAGTATATTTACAAAATACGCATATTCATTTAATCTCAGGTCGTGATACAAT TTCGGTAATAGATAGGCATGAACCCAAAGGGATATAACACCTTCAATGAAGTGCACATTTTTTTTTTGGGTTTAATGTCC TTGAACAATTAAAAAGCAAGATTACATTCCATGTGTATCAAACTGATTTAGTGAATTTGATAAAGACTTACTTTGGAAGA TGGGAAGTCGAAATCAAATTTCATGATTTAAATTGAGCTATTTATTCTAAAGATGCAGTTCACTACATATCCCAATAAAA ATACTTAGAGCATCTCCAATGGTAGTATCTAATGTTAATACATACTCATATGAGTATCTATTACCGTTGGAGTACATATT CAATTCCAACATGGCAAAGATGAGTATGTGGGAATAGATACTCCACACTAGACTTGAAAAGTGAGCT
CDS sequence (LotjaGi1g1v0386200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGATTCAAGAAGGGAAGTAAGGTGGAGATCCTAGGCAAAAACGAAGGGCTTCCTGTGGAATGGCGTTGTGCTCGAAT TATTTCTGGTAATGGGCGCACTTACAGTATCCAGTATGACTGTTCTAGCATGACAAGTGAGGAGGCCAGTGTTGATAGGG TTCAAAGGAAGGCCATCAGACCATGCCCCCCTCTTATTCAAGGCACTGGGAGCTGGAAATCTAATGATTTTGCGGAGGTT TATGATGCTGGTTCATGGAGAGCTGCTACTGTTTTGAAGTCCATAGGCCAAGACTTTTACTTGGTTAGGTTGTGGTTGTC TTGCAAGGAGTTTAAGGTGCACAAAGTTGACATGAGGATACGCCAATTTTGGCAAGATGATCAATGGACCCAAGGGATCC TTAACCCAGTGGCCCTAGGTGAATCTGCAGCAGGGAAGACTAGGCGGAATTTGATTTCAAACAACTATACGGTGATGCCT GAAGTGCAACAAGCTAGAAATTCTTGTTTACCAGGATCAGATGCCAGTGATCTCCTGGAGCCTCATCTAACCCCAACAGT GAAGAGAGTGTTCCCTTATGGCTCCTCTCTTGCTGAGGATTATCCCAGGAAAAGGAGGCTTGTTGTCAATATGGGTGAGT GTGACAGAATCAGAGCACCAACCACAGCCCCATTGCTGGAAAAGGTAGATGCTATTGCTTACCCACAAAATAATATGGGT GAAAAATACTTGCATTCTTCCTTTACTCATAATATCAAACAATATTATGAAATTAGGGAGGACACTCTTTTTGAAAGAAT TGAAGAACCAGATTACTCTTGTGGTGGTCTGAGTTCAGTTGGCAGTTGTAGTGTGACAAGTTGTAGTTCAAATAAATTTT TCAGTGATACATTAGCAGGTCCTTCCCAGTATGAAGATGAACTTTGTAGTGATGCGGAATCTGTAGATGTTGGAAATGTG GATGGGGACAAAGGATGCACCGATTCTCCGAAAGAGGTTGTACCCGAAAGAATTCATAGGTTAGAGTTGCATGCTTATTA CAGTACGTTAGAGGCAATGTATACTTCTGGTCCTTTAAGTTGGGAACAAGAAGGATTATTGACTAATCTTCGTATTTCAC TCAATATTTCAAATGATGAGCATTTGATGGGGATAAAGAAATTAGTATCTAGTCAGCATTTCTAA
Protein sequence (LotjaGi1g1v0386200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRFKKGSKVEILGKNEGLPVEWRCARIISGNGRTYSIQYDCSSMTSEEASVDRVQRKAIRPCPPLIQGTGSWKSNDFAEV YDAGSWRAATVLKSIGQDFYLVRLWLSCKEFKVHKVDMRIRQFWQDDQWTQGILNPVALGESAAGKTRRNLISNNYTVMP EVQQARNSCLPGSDASDLLEPHLTPTVKRVFPYGSSLAEDYPRKRRLVVNMGECDRIRAPTTAPLLEKVDAIAYPQNNMG EKYLHSSFTHNIKQYYEIREDTLFERIEEPDYSCGGLSSVGSCSVTSCSSNKFFSDTLAGPSQYEDELCSDAESVDVGNV DGDKGCTDSPKEVVPERIHRLELHAYYSTLEAMYTSGPLSWEQEGLLTNLRISLNISNDEHLMGIKKLVSSQHF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 380 | 380 | 3.8E-85 | – | |
| PANTHER | 1 | 380 | 380 | 3.8E-85 | – | |
| SMART | 1 | 67 | 67 | 1.9E-8 | ||
| Pfam | 6 | 64 | 59 | 1.3E-9 | ||
| SMART | 70 | 126 | 57 | 0.31 | ||
| Gene3D | 326 | 394 | 69 | 1.4E-8 | ||
| SMART | 334 | 393 | 60 | 2.5E-19 | ||
| ProSiteProfiles | 334 | 394 | 61 | 15.252 | ||
| Pfam | 337 | 389 | 53 | 2.1E-12 | ||
| SUPERFAMILY | 337 | 392 | 56 | 6.28E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0386200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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