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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0386200 |
Transcript ID | LotjaGi1g1v0386200.4 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Plant tudor-like RNA-binding protein; TAIR: AT4G32440.1 Plant Tudor-like RNA-binding protein; Swiss-Prot: sp|Q08A72|EML4_ARATH Protein EMSY-LIKE 4; TrEMBL-Plants: tr|I1JUF7|I1JUF7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0386200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:86959038..86964819) extracted from Lotus japonicus Gifu genome v1.2.
CCGCAAACCAAAAATTCGGATTTCTCTTTTCACTCTTCTCTTGTTGTTGTTCATCGAGTCTCGGAAACCCTCATCGCTAG GTTGCTTGTGGTTGATCACCGAGTCTCGGAAACCCTCGTTCCTTTAAAACGAGGCAAAGAGACTCGCTGCGATTCTGCAA TCGTTGATCACCGTCGAAAAGGTCAGTGTTCATCTTCTTCATCTGTTCTGTTTGATGCTATCTTTTGCGATTTACGTTTT CCAATTTCTTCAATTCGCGACGTGTTTGAATTTCGATTTCGATTTCGTTTTATCGCTTTCTAGTTCCTGATTCTATGCTT ATTTTGATTCGTTTGCCTTTCTGTGTATTGTACCCGTTCTGGATTTTGAATCACCTTTCGAATAACCCTAGTTTCATTTG TATTTGGGGCAAAGAAATTCAGTATTTGTAGCTATTTACATTCAGTAGCCAATTTCCGTTGAGTTTTCCGCTCCAATAAA TTATTGTTTTTGGTTAGTAAATTGTTCTCTTGTAAATTTTCATTCCATTAACACATGTTGATTTGAGTGATGATTGTTTT TTAGCTTCTAGGGTTATAGTTTACAATTGTACTGGAAGGATTTCTTGAAGTTGTGAAAACAAACAATAAATCTGTAACCC TATATGTGTACCGAATGTTAATAATTGTGAGATTTTGTTTCGTGGGGACTAATAATGTTCATGAATGTCACAGGTTGGAG TTTGAATTGATTTGAAGTAGTCACAATGAGATTCAAGAAGGGAAGTAAGGTGGAGATCCTAGGCAAAAACGAAGGGCTTC CTGTGGAATGGCGTTGTGCTCGAATTATTTCTGGTAATGGGCGCACTTACAGTATCCAGTATGACTGTTCTAGCATGACA AGTGAGGAGGCCAGTGTTGATAGGGTTCAAAGGAAGGCCATCAGACCATGCCCCCCTCTTATTCAAGGCACTGGGAGCTG GAAATCTAATGATTTTGCGGAGGTTTATGATGCTGGTTCATGGAGAGCTGCTACTGTTTTGAAGTCCATAGGCCAAGACT TTTACTTGGTTAGGTTGTGGTTGTCTTGCAAGGAGTTTAAGGTGCACAAAGTTGACATGAGGATACGCCAATTTTGGCAA GATGATCAATGGACCCAAGGGATCCTTAACCCAGTGGTAAATTTCGACTTTCTTTTATAAGTGTCAATCGTTGATTATTA TCTTATTTTTATTTTATTCCTTTTATCAAGTATTGTTAAAGTTTTGGCATTTGTGTAGTGTTTGTTAGATTATAACCGAA TTCCAACCCATTTATATCGTTTTACATGTTATTATTGATATTGCTAATTGCTTCTAAATGGAGAAAGTTTTTATTTGCCA TGATTACTCTGAAATTTGTTTCCACTCCGTGTCCTTATATTTTCTGGTGCTTTTCACAGGCCCTAGGTGAATCTGCAGCA GGGAAGACTAGGCGGAATTTGATTTCAAACAACTATACGGTGATGCCTGAAGTGCAACAAGCTAGAAATTCTTGTTTACC AGGATCAGATGCCAGTGATCTCCTGGAGCCTCATCTAACCCCAACAGTGAAGAGAGTGTTCCCTTATGGCTCCTCTCTTG CTGAGGATTATCCCAGGAAAAGGAGGCTTGTTGTCAATATGGGTGAGTGTGACAGAATCAGAGCACCAACCACAGCCCCA TTGCTGGAAAAGGTAGATGCTATTGCTTACCCACAAAATAATATGGGTGAAAAATACTTGCATTCTTCCTTTACTCATAA TATCAAACAATATTATGAAATTAGGGAGGACACTCTTTTTGAAAGAATTGAAGAACCAGATTACTCTTGTGGTGGTCTGA GTTCAGTTGGCAGTTGTAGTGTGACAAGTTGTAGTTCAAATAAATTTTTCAGTGATACATTAGCAGGTCCTTCCCAGTAT GAAGATGAACTTTGTAGTGATGCGGAATCTGTAGATGTTGGAAATGTGGATGGGGACAAAGGATGCACCGATTCTCCGAA AGAGGTTGTACCCGAAAGAATTCATAGGTTAGAGTTGCATGCTTATTACAGTACGTTAGAGGCAATGTATACTTCTGGTC CTTTAAGTTGGGAACAAGAAGGATTATTGACTAATCTTCGTATTTCACTCAATATTTCAAATGATGAGCATTTGATGGGG ATAAAGAAATTAGTATCTAGTCAGCATTTCTAAATGTTTAGACAGGATAGGTTGTCGTACAATTGTTTAAAAAATTTATG TACAGCATTATTTGGTTTTGTGCTAGAGAAGATATTCTTCTGAGTCATCCTATGTTATTCATTCTGTATTATGGAAACTA TGATGCTACAGTTATTATGAACTGATCAAGTTATATGGCACTTTGTTTATTTGTCTTCTTTTAGTTTATTAGGACTTGTA GTGTTAATTTATGTTTTTATGTCCTTTTCAATATTTAAAGTTTAGCTTGCATACCCCCAGTGATTCATAGCTATGAGAGA TTCGTCTGCTTGTCTCTTTAATTTATTTATACTGCTTATGTTTATCATTTAATTTCCCAGCAATGATTAACAACTTGATG ATTATGACTTTGACACCTACTTCACAAAACTACGATTAAAACTAAGATATTGTTTAATTTGGCAAAGTTTTATTAGCTGT CTAATTGTAGCATGAGCTTTTCCACCGTTTGATTGTTATTGATGAATCAACATAATTTTCCAGGGCCAGGGTAGGAGGCT TGCTTGCCTTGCTTCCAATGGCTAAATACAATGGCTAGGTTTGCCTCTTTTCTCTCCGCAAATTAATTGGTGACATCTAC CAATGATTTTCTTGCAGAGATAAGAAATTTCTGACTACTGTTTGCTCTGTTTCCTAATAATATAGTTTGTTTCAGGTCTG CTTTGAACTCTCGTCATGTCATGTCAGAACATGAGCTTTTTTAAATCTGCGGACACAGCACTTACATGGAAGATCCTCTT TAGTACATATGATCAGATAACTGCTGTTTATTTCACTAGTTTGCATGCTGTGTCAATTATCTTCGTGTGACTATAACACT TTATCATGTAAGTTGAAAAGCAAGTTATGCTAGGATGTAACAGTGTTATTAGGGTTGTTAATTGTGCTGCCACATGGTGT CAGGTGATCTCCAAGTGATTTAAGGGCTGTACAGTGCGACTCTAAATCACTGTTACTTTGTTTGATGGGTAAAAACCATA CTCCGTCCCCATTTTTGTGTGACCCACATAGTTCTTAAGGGTTCTTTGGTCATTTCTATAGTGCACCCACTCCTCTTAGG GTTTTTACCCTAAGTCTCCCACTCTCCTTTGTTCGTGAAATGCATCATCTTCACGAATGTTTTAAAAATTAGACCGGTGT TTGAATCGGAGAAGGCATTGATTTAGAGTTTTTTTGTTCGGCCACAGTTATCTGTTAATAATTAAATATATGTTTTTAAT ATCATAATATTTCAATTGACTAACCAACGTGAATTTAAAAATATCAAGATATATAAATCTTTAAATTAATATAAATAGGC CTTATTGTATTTTGTAAGAAAAAGAAATAATAATAGGTTAAATGGTGCTCACTTTTACAGAAATATTATATATTTGTTCT TTCTATTTCTTGAGAATTGTTTTGTATTGAATATAGATTTTGAAAAATTTAAAAAGACTACAATCCTGTTCTTTAGCGTT GTTTTTAATTGGTTTCAACCGTTTTTAGACTAGGTTGACCGGTTCTCTACTAATTTCTTTGCCATCTGAATTTTTGACCT GACTAGTTCACTGGTTGTCCAATGGAGTCGACAAGTCCGGTCCAATTTTTCAAACATCGGTCTTCATTTCCCAATCCATT ATCCATTGGTTTGGTTGTCTCTCTTCTATCCCGTTCTTCCATTTTTTTTAATGTTTGTTTGTGTGGTGTATTACTGACTG TATTCTACCCTCCACAGCCCTCTGTTTTCGCATCTCTGTGACCTCTCTTGTTATGTTTTTTTCTTTTTTGTTGTATATTT TGGTGAATGTGCATTTGTTTCTATGACTTCTTATCATTATTGACTAATATGTCTTTAATTTATGGTAACTTTTTTTTTTT ATCTATGTACAATTTAGAAAAAGGTTAGGGTAGCTCTTGTAAATAGTTAAGGCAATTGTATGTTAGATAGGTTGCGTGAG TAAGTGTTATTATACCTATGTCTTGCTATGGTAAATTATTTTGAAATTAAGGTTGAGTTTTTTTGAATTTTCTTTTGCTG CCATGTGTTCCGGTCCACAGGAAAAGGTGTACATGCTTCTGAAGCAAGCCCCCTTCGTGGCCTCACGATATTGTTGGCAG GTACTGGATGAAAATTGTTTAACACTTGTAGGATCAGTTTTGGATTTTATGTTGAAAATTTACCGCATCTAATTATTGTT TAAGAAACACAAATAAGCATGCACTTGTGTCTCCAAATATCTGCTTTTCATTTTTCTCGCTTGAGCAGTTTCTGTGCATG TAGATATCTCTTCAGATGCTCAAAATGTCTGACTTCACTTTTTTATTCCATTATCAAAGATTCTCAGTTTGTCTTTTTTC TATTGATTTGGATTCTGACACCGCATTATTTTGTTAATTTATTTTTTCATTGAGGCTGAGTTCATTCTGTTTTTCTCTCC AATTAATAATGATGCTTGTAGAGTTCACCACTGTCTAATTAGATGCCATTGCTTTCCTGGTAAGTAACTTTTTGCTATCA GATTTTTTTTTTAAACTTTAGCTTGTAGCCTCGATATTGATGAATAAAACCCTGTACTTGTAAATATATTCTAAAATTCA TCTAGGTTAGTTATTCTTGTTACGCAGATTTTTTTTTCTGTTTATACTCTTAAGACTCTTTTTATTACTGCAGCTAATTA AGCTTTGACTTGCATATATCAAAAGGCTATTGGAAAGGTATCATAAGATGATACGAACAAGTAACTTAGATGCATACTGA ATTTGTTTACCTGCATTTCACATATAAAGTCTGACTTGTTTTCTTAATATGAATCATGGCTCTCTATTTAGTATTTACAG TTCAAACATCAGTGCTAACCCTTCAATTGACATTATATAACAATGACGACAATAACAAAAACATAAACAAAGACCTTTTC CTACAAGGTAGGCCGGGTACATTAATCATAGTGTAATGCCTTGTCATGTAATAAGGCGCAAAAAATCCTCGTCATTGTCA AACAAATTTAACCATGCTGCTATATCATCTTTGGACCTGCTATATAATGCCAAAAAGGTATTTAAAATATACAACATTTG CATACAAATGCAGCTGCTAGCGTAAAAAAAGAGATTTACTCGTGTTATGAGAATGTTGATAGTATTATCCTAAGTTGATA TAATTGCTGTCATCTATTTACTAAGAAATTTAGCGCTTAGTGCATGAGATTATCTTGTCCTAATTCATACAGATTTGCTC GTGTTTGTTCAGGGTGTCTGGAAACCCAATGTTTTTTTTCCTTCACGTTTAGGGATTTTGAGGATTGAAAGTGTATTCAA ACATGTTATTTATCTCAGCTGGTTGTCAAGGGCACCTATCTGAGTTGGCTGTCAAGTGCACATGGGTTACAATTTTTGTT TTTTGATTTAGTACCAATATTTGGCTCGTAAGTTGAGTTTGTAATTTATTTGAGTTCATGTTCTGTATATCTTTAGAATA ACGAAACCTTCTATTTCTAGTCACAACAATTATCATTATGCATTTTTTTTTTACTTGTTTCAAAGGTGTGCGAAGAGTAA AAGCTCTTTACTAATAAACTGG
CDS sequence (LotjaGi1g1v0386200.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGATTCAAGAAGGGAAGTAAGGTGGAGATCCTAGGCAAAAACGAAGGGCTTCCTGTGGAATGGCGTTGTGCTCGAAT TATTTCTGGTAATGGGCGCACTTACAGTATCCAGTATGACTGTTCTAGCATGACAAGTGAGGAGGCCAGTGTTGATAGGG TTCAAAGGAAGGCCATCAGACCATGCCCCCCTCTTATTCAAGGCACTGGGAGCTGGAAATCTAATGATTTTGCGGAGGTT TATGATGCTGGTTCATGGAGAGCTGCTACTGTTTTGAAGTCCATAGGCCAAGACTTTTACTTGGTTAGGTTGTGGTTGTC TTGCAAGGAGTTTAAGGTGCACAAAGTTGACATGAGGATACGCCAATTTTGGCAAGATGATCAATGGACCCAAGGGATCC TTAACCCAGTGGCCCTAGGTGAATCTGCAGCAGGGAAGACTAGGCGGAATTTGATTTCAAACAACTATACGGTGATGCCT GAAGTGCAACAAGCTAGAAATTCTTGTTTACCAGGATCAGATGCCAGTGATCTCCTGGAGCCTCATCTAACCCCAACAGT GAAGAGAGTGTTCCCTTATGGCTCCTCTCTTGCTGAGGATTATCCCAGGAAAAGGAGGCTTGTTGTCAATATGGGTGAGT GTGACAGAATCAGAGCACCAACCACAGCCCCATTGCTGGAAAAGGTAGATGCTATTGCTTACCCACAAAATAATATGGGT GAAAAATACTTGCATTCTTCCTTTACTCATAATATCAAACAATATTATGAAATTAGGGAGGACACTCTTTTTGAAAGAAT TGAAGAACCAGATTACTCTTGTGGTGGTCTGAGTTCAGTTGGCAGTTGTAGTGTGACAAGTTGTAGTTCAAATAAATTTT TCAGTGATACATTAGCAGGTCCTTCCCAGTATGAAGATGAACTTTGTAGTGATGCGGAATCTGTAGATGTTGGAAATGTG GATGGGGACAAAGGATGCACCGATTCTCCGAAAGAGGTTGTACCCGAAAGAATTCATAGGTTAGAGTTGCATGCTTATTA CAGTACGTTAGAGGCAATGTATACTTCTGGTCCTTTAAGTTGGGAACAAGAAGGATTATTGACTAATCTTCGTATTTCAC TCAATATTTCAAATGATGAGCATTTGATGGGGATAAAGAAATTAGTATCTAGTCAGCATTTCTAA
Protein sequence (LotjaGi1g1v0386200.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRFKKGSKVEILGKNEGLPVEWRCARIISGNGRTYSIQYDCSSMTSEEASVDRVQRKAIRPCPPLIQGTGSWKSNDFAEV YDAGSWRAATVLKSIGQDFYLVRLWLSCKEFKVHKVDMRIRQFWQDDQWTQGILNPVALGESAAGKTRRNLISNNYTVMP EVQQARNSCLPGSDASDLLEPHLTPTVKRVFPYGSSLAEDYPRKRRLVVNMGECDRIRAPTTAPLLEKVDAIAYPQNNMG EKYLHSSFTHNIKQYYEIREDTLFERIEEPDYSCGGLSSVGSCSVTSCSSNKFFSDTLAGPSQYEDELCSDAESVDVGNV DGDKGCTDSPKEVVPERIHRLELHAYYSTLEAMYTSGPLSWEQEGLLTNLRISLNISNDEHLMGIKKLVSSQHF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 380 | 380 | 3.8E-85 | – | |
PANTHER | 1 | 380 | 380 | 3.8E-85 | – | |
SMART | 1 | 67 | 67 | 1.9E-8 | ||
Pfam | 6 | 64 | 59 | 1.3E-9 | ||
SMART | 70 | 126 | 57 | 0.31 | ||
Gene3D | 326 | 394 | 69 | 1.4E-8 | ||
SMART | 334 | 393 | 60 | 2.5E-19 | ||
ProSiteProfiles | 334 | 394 | 61 | 15.252 | ||
Pfam | 337 | 389 | 53 | 2.1E-12 | ||
SUPERFAMILY | 337 | 392 | 56 | 6.28E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0386200.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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