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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0387200 |
| Transcript ID | LotjaGi1g1v0387200.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 1-deoxy-D-xylulose-5-phosphate synthase; TAIR: AT5G11380.1 1-deoxy-D-xylulose 5-phosphate synthase 3; Swiss-Prot: sp|O78328|DXS_CAPAN Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic; TrEMBL-Plants: tr|K7KTK7|K7KTK7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0387200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:87049884..87055504) extracted from Lotus japonicus Gifu genome v1.2.
TTCATTGATAGAGTATGTGCACGGTCTGATATTGATGATTTTGACTGGGAATGGGACGAAGTTCCGACACCTATTCTTGA CACGGTTGAAAATCCTCTTTGCTTGAAGAACCTTTCTCTTAAGGTTGGTTGTAAGCTTGTAACCATTCTTTCTTCATTTT GCTTTTACATCACATATACTTGCAATCACAAAGCATCTAAATACCTAAATATTTGTGCTTGCAGGAACTGAAACAACTAG CTGCTGAAATCCGTATGGACCTATCTTCTCTTATGTCAGATACACAAATATCACCGAAAGCAAGTATGGCAGTAGCGGAG CTGACGGTTGCAATGCATCATGTTTTTCATGCTCCAGTAGACAAGATATTGTGGGATGTTGGGGATCAAGTAAGATTTTA AGTGATAAACAAAAATGCAAGGGCGTCTTTCGTATTTTAAATTTCCCCTCTCCTTTGGGGTGGAAAGTTGAATGTGAATC AATGATTGACCTATTTTGGTTAATGTAAACTATTCATTATTTGTGTGCAGACATATGCACATAAGATTCTTACAGGAAGG CGATCACTTATGAAGACAATGAGACAAAAGAATGGTCTTTCTGGTTTTACATCCCGATCTGAGAGTGAATATGATGCATT TGGTTCAGGTCATGGGTGCAACAGTATTTCTGCTGGACTTGGTAGTTTATAAATCCTTTCCCGTTTTGATAATATTAGTT TCTTATTACATCATTCAGGTTCATATTTTATTTTTTTGTCATTTGCTGTATGAGTGTATGTATTGTAGGTAGGTTGATAA ATTATATTTTTTCTGCTGTAAATAGGGCCACTTCACGTTTTACTTCTTAGATGAATTAATAAAATTCCTACAGGTGAAGT TTCAAATTATCTCAAACTCATATTTGGTGTATTCTATTTCAGGCATGGCAGTGGCACGGGATATTAAAGGGAGGCGAGAG CGAATAGTTGCAGTTATCAGCAATTGGACTACGATGGCTGGTCAGGTGTATGAGGCAATGAGCAATGCAGGATGTTTGGA CTCAAATCTGGTGGTGATTTTGAATGACAGCCGTCACTCTTTACTCCCCAAAATCGATGAGGGCCCAACAACTTCTGTCA GTGCCCTGTCTAGTACCCTAAGCAGGCTCCAGTCCAGTAAATCTTTCCGAAGATTTAGAGAAGCTGCTAAGGTATGTTTC TATTTCCCCTCCTGTGTAGAGAAATAATGCTAGAAAGCTATAAATTCGTCTTCAGCATTTGTTGCTGACATGCAGCCGCA TGGTCCATATGACAATGCCACGCCATTCATGTTGTTGATTAGCCTCATTTTGTTGGTGTAATCTTCGCTTTCGCTCCTTC CATGGGGGTTCTGTCCTCAGGGGCTTCTTGTGGATAATATAAATACTTTATTTTTCAAAAAGAAAAAAATTGGCATGCTA AATGACTTATAATTCAAAATGGATTAGTACATGGACTGTTATGTATAATTTGTGGCCTGCCAAAAATACTCATCACTTTA CGTTTTAATTTATTGTGACAACTGAGATCTTTCTGTGTGCATTGAGAAAGATAAATAGAAGTGCAAATCTCCCCCTCCCA AACGCTTGTGCGTATGTGCATTTTTACTCTTAGTGTTTCCATGTTACCTTCTCATTCAACATAAGTGATGCGTCTAATAA GTAACAAAGATAGTCCTTCTTTAAGACCCCAATTTTCATATCTTCATGCCCTATGCTTCATATTCACATTATGTTTAAGT GATTGGTAATTCGTCTGCTTTATCACAGGGTGTTACTAAACGAATTGGTAGGGGTATGCATGAATGGGCAGCTAAAGTTG ATGAATATGCCCGTGGTATGATGGGTCCACTAGGTGCTACTCTTTTTGAAGAGCTTGGATTGTACTACATTGGACCAGTG GATGGACACAATATGGAAGATCTAGTATGTGTGTTGCAAGAAGTAGCATCCCTGGATTCAATGGGTCCTGTGTTAGTTCA TGTGATAACCGATAAAAATCAGGGAGTAGAAAACAATCAGAAAAGTGATATAACGGACAGGCATCAGAATGGTACTAATT TCTATCGCAATTGTATTGCATATGCTCCATTCCATGTCATATCTTCTTGTGTGATTGCTTATCTTGCCTATACTGATCTT ACACTCTAGTTTCGTTTTTCTTGGGTTTTCCTCTTTCTCTCTCTTTCCCATTTGAGTTTATTTCAGATGCTTAAGCCTTT CAGAAAGTGAAATGAATCCCTTCATTATTGATTAGCTTAAATATAGACCCTATGCAATAACATTATGATAACTTATAAAG GACACGATGCTCCATAAAACAACCAAGTCTCATCTTACTAGGTAGAGTTTGCTTCATGGATAAAAGGACTCCATTGGGTT CTGTGAAAAACTAAAATTTGATTAAATCCTTTTAATATGCTTTTCAAGCCTTTTGGCCTTTTCTTAATCTGAGCTGAAGC AGCACTGCATTTATTTGGCTTCTTATCTAGGTTCAGGTGGATACAATTAACATTTCATCTAGGTGTAGTACAAATGCCTT AAAAAATTTAAATGATATGTAACCAAACATTTATTTGTTTCCTATGTAATTTTTCAGATTCTGTTGAAACTGATTTTTTA AACCATGATGTTCGCCCTCAAGCGTATGGTGATTGCTTTGTGGAGACTTTGGTTGCAGAAGCAGAGAAAGACAAAGATAT TGTGGTTGTTCATGCAGGAATGTTGATGGAGCCATCACTTGAACTGTTTCGAGAAAAATTTCCAGATAGATTTTTTGATG TGGGAATGGCTGAGCAACATGCTGTGACATTTGCTTCTGGTTTGTCATGTGGTGGATTGAAGCCATTTTGCATTATACCT TCTTCCTTCCTACAAAGAGCCTATGACCAGGTCTGACCCAATTTCAGCTTAAACTAACATGATAACCACTACCTGTTCAC AGAAAATCAGAATTTCTTGAAAAATGGAATATTTTTAGTTCATATAAATTATTTAATTAAATAATTTCTGAAAAAAAGGA ATCAAGGGTAAAAGATACATCTGGAAACATGTTAAACAGTAAGAAGCATTGCAGCAATACTATTATTGTTATATTATGAA TAGAGAGATAGAAAAAAATGAAAGTAGTAACAGTACTGCATATCTGGTGCATGCGCTGCCAAGTTGTAAGGATTGAAGGG GATTTTACTTTATGAACCTTCAGGGAGTTTTATAGAACTGGACCAGAAATGGAGAAGAAGAAAGAATTCTTTATTGAAAA GTAAGAAACTGTATACAATTCTCTAGCATTTGAGAGGTTAGAACTCTCCCAAAACAGATCCTATTTCCAGAATATCCTAA CTAGTTAACAGCTGCCACATAACCCAAGCAACCTCTAAGCTGATTGCCATCTCATTCACAAACAAACTGCCTAATACATT GATATGTTAAGATCCTCCCTCCCATAATCTAGGTCCATTAGTTGGCCTAGTATCTAATTCTATCAGAGTTTGGTACTCGA GGATCTCTGACAGCATTAGCAAAACTATGTAACCTGAGAAAATAGATATCATATTATTATGTGTATTTTTAATTTGCAAT TGTGCGTGGATAGGTGGCATTGTGATTAAAACAACCTGATCTGACTGATAATTTTTTTTTGTAAATCCAACAAAATGTAT TGGAATAGACAAAGGCCCCGTTTGGAAACACAGCTTAATTAAGCGCTTATGGTCATAAGCGCTTATGACATAAGCACTTA TTCATAAGCTATTTTAAAATATTTATTGCAATAAATCGAAAATGAGCTATATATAAGCATGAGCTCTTTTTCATAAGCTA TCCTGAGTAGCTTATGAAAATAAGCTCAAAACAGCTTATGGCCTACCATAAGCTGTTTGCATAAGCTCTCCCAAACACCG GCATAAGAGCTTATACTATCAGATAAGCTCAAATAAGCTCTTCCAAAGGGGCCTTTCTCAGTAGAAAAATTTCCCCAATG GCCTTTCTACTTGTATGCAGAATGGATAGCTTGTACACTACACATTATATAATGATTTTATACTAGTAATTACAGTTTTT AACATGTTAATTGTTACATGTCCGTATAGGTGGTTCATGATGTTGATCAACAGAAAATTCCAGTGCGTTTTGTCATTACA AGTGCGGGAGTGGTTGGTTCTGATGGTCCCCTCCATTGTGGGGCATTTGACATAACCTTCATGTCATGCTTGCCAAACAT GATAGTCATGGCGCCATCTGATGAGGTTGAACTCATGCACATGGTGGCTACTGCTGCTCAAATCAATGATCGGCCCGTAT GCTTTCGGTATCCTAGGGGTGTCTTGGTTGGGGAAGACTACACTATACCCAATGGAATCCCCATTAAGGTAATTGGGTGA TATAGTTTTTTTTTTTCTTCTTTTTTTGGCTGTATTGTGGGTTTTGTTGAAACACATTACACATTGCTTTAAAAGGGTGA ACTAATCTAGGGAAGTGCCATTCATTTTTACCTTCCCCTAAATTTTATCAAAGTATTATATAGCATATTGTCCTCCTTTA AATTTGGAGCGGTTGTATGTATTCATATACAGATTGGAAAAGGAAGAATTCTTGCTGAAGGTAAAGATGTTGCTTTACTG GGATATGGATCAATGGTTCAGAACTGTCTGAAGGCTCACTCACTTCTTGCAAAGCTTGGTGTTGAGGTGACTGTTGCTGA CGCAAGGTTCTGCAAGCCCCTTGACATCAAGCTTCTGAGGCATCTTTGTAAACACCATTCTTTTCTAATTACTGTTGAGG AAGGTTCCGTAGGGGGATTTGGTTCCCATGTTGCTCAGTTTATTGCACTGGATGGACTGCTTGATAGAGGAATCAAGGTA ATTCGAGTAAGCTAGGTGAAATGATTATATTTGTTTTATGGTTTTTAGTATATTTGGGCCTAGGAACGTGTTATTGGCTT CTATTTATAACTGGCTTAAAAATATCAGATTAAAGATAACTGAATTTCTTTCATTTGTATACCTCTCTGAATTTCTTGGT GGGAATGTATAGCTTTTTTTTTATAGGCAACATGATTGATAGGTGGCCCCTTAGTGTGTAATAGCAAGTTAAGTATCATA CAACAAATTGTTTATTTTAATTTCGAAGGTCATTTGGCAAATTCATGTATAGTGTTTGGTGCATTTTTAAGTATACATAG CCCTTACATATCTTGCGCAGCAAAGTATGACTGAATTTTGCATTTGGTCAAAGTTTCTGATATTCTGTTTCATATTTTGT GGATCAACTCTTCCAGTGGCGACCAATTGTCTTACCAGACAGATACATTGAGCATGCATCTCCAAATGAGCAGCTTGACC AAGCAGGGTTGACTGGACATCACATTGCTGCAACCGCGTTGAGTTTGCTCGGCCGTACCCGTGAAGCTCTCCAGTTTATG TGCTTCTGACTTACACGCTTCATGTTCTTTTCCAGAAAGTTGGATAGTTGCATAGGAGAATCAAGAATGCAAAGGGCAGT TAGGTTTACCGGTCTCTTTCTATTTATAATGTTGTGTAGTTCTCCTTTACAAGTCTGGTGAAAAAGAGATCATGAATGCT ATTTTAATTGTACAGCACTGA
CDS sequence (LotjaGi1g1v0387200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACCTATCTTCTCTTATGTCAGATACACAAATATCACCGAAAGCAAGTATGGCAGTAGCGGAGCTGACGGTTGCAAT GCATCATGTTTTTCATGCTCCAGTAGACAAGATATTGTGGGATGTTGGGGATCAAACATATGCACATAAGATTCTTACAG GAAGGCGATCACTTATGAAGACAATGAGACAAAAGAATGGTCTTTCTGGTTTTACATCCCGATCTGAGAGTGAATATGAT GCATTTGGTTCAGGTCATGGGTGCAACAGTATTTCTGCTGGACTTGGCATGGCAGTGGCACGGGATATTAAAGGGAGGCG AGAGCGAATAGTTGCAGTTATCAGCAATTGGACTACGATGGCTGGTCAGGTGTATGAGGCAATGAGCAATGCAGGATGTT TGGACTCAAATCTGGTGGTGATTTTGAATGACAGCCGTCACTCTTTACTCCCCAAAATCGATGAGGGCCCAACAACTTCT GTCAGTGCCCTGTCTAGTACCCTAAGCAGGCTCCAGTCCAGTAAATCTTTCCGAAGATTTAGAGAAGCTGCTAAGGGTGT TACTAAACGAATTGGTAGGGGTATGCATGAATGGGCAGCTAAAGTTGATGAATATGCCCGTGGTATGATGGGTCCACTAG GTGCTACTCTTTTTGAAGAGCTTGGATTGTACTACATTGGACCAGTGGATGGACACAATATGGAAGATCTAGTATGTGTG TTGCAAGAAGTAGCATCCCTGGATTCAATGGGTCCTGTGTTAGTTCATGTGATAACCGATAAAAATCAGGGAGTAGAAAA CAATCAGAAAAGTGATATAACGGACAGGCATCAGAATGATTCTGTTGAAACTGATTTTTTAAACCATGATGTTCGCCCTC AAGCGTATGGTGATTGCTTTGTGGAGACTTTGGTTGCAGAAGCAGAGAAAGACAAAGATATTGTGGTTGTTCATGCAGGA ATGTTGATGGAGCCATCACTTGAACTGTTTCGAGAAAAATTTCCAGATAGATTTTTTGATGTGGGAATGGCTGAGCAACA TGCTGTGACATTTGCTTCTGGTTTGTCATGTGGTGGATTGAAGCCATTTTGCATTATACCTTCTTCCTTCCTACAAAGAG CCTATGACCAGGTGGTTCATGATGTTGATCAACAGAAAATTCCAGTGCGTTTTGTCATTACAAGTGCGGGAGTGGTTGGT TCTGATGGTCCCCTCCATTGTGGGGCATTTGACATAACCTTCATGTCATGCTTGCCAAACATGATAGTCATGGCGCCATC TGATGAGGTTGAACTCATGCACATGGTGGCTACTGCTGCTCAAATCAATGATCGGCCCGTATGCTTTCGGTATCCTAGGG GTGTCTTGGTTGGGGAAGACTACACTATACCCAATGGAATCCCCATTAAGATTGGAAAAGGAAGAATTCTTGCTGAAGGT AAAGATGTTGCTTTACTGGGATATGGATCAATGGTTCAGAACTGTCTGAAGGCTCACTCACTTCTTGCAAAGCTTGGTGT TGAGGTGACTGTTGCTGACGCAAGGTTCTGCAAGCCCCTTGACATCAAGCTTCTGAGGCATCTTTGTAAACACCATTCTT TTCTAATTACTGTTGAGGAAGGTTCCGTAGGGGGATTTGGTTCCCATTGGCGACCAATTGTCTTACCAGACAGATACATT GAGCATGCATCTCCAAATGAGCAGCTTGACCAAGCAGGGTTGACTGGACATCACATTGCTGCAACCGCGTTGAGTTTGCT CGGCCGTACCCGTGAAGCTCTCCAGTTTATGTGCTTCTGA
Protein sequence (LotjaGi1g1v0387200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDLSSLMSDTQISPKASMAVAELTVAMHHVFHAPVDKILWDVGDQTYAHKILTGRRSLMKTMRQKNGLSGFTSRSESEYD AFGSGHGCNSISAGLGMAVARDIKGRRERIVAVISNWTTMAGQVYEAMSNAGCLDSNLVVILNDSRHSLLPKIDEGPTTS VSALSSTLSRLQSSKSFRRFREAAKGVTKRIGRGMHEWAAKVDEYARGMMGPLGATLFEELGLYYIGPVDGHNMEDLVCV LQEVASLDSMGPVLVHVITDKNQGVENNQKSDITDRHQNDSVETDFLNHDVRPQAYGDCFVETLVAEAEKDKDIVVVHAG MLMEPSLELFREKFPDRFFDVGMAEQHAVTFASGLSCGGLKPFCIIPSSFLQRAYDQVVHDVDQQKIPVRFVITSAGVVG SDGPLHCGAFDITFMSCLPNMIVMAPSDEVELMHMVATAAQINDRPVCFRYPRGVLVGEDYTIPNGIPIKIGKGRILAEG KDVALLGYGSMVQNCLKAHSLLAKLGVEVTVADARFCKPLDIKLLRHLCKHHSFLITVEEGSVGGFGSHWRPIVLPDRYI EHASPNEQLDQAGLTGHHIAATALSLLGRTREALQFMCF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 597 | 596 | 0.0 | ||
| PANTHER | 2 | 597 | 596 | 0.0 | – | |
| Pfam | 16 | 259 | 244 | 9.4E-78 | ||
| CDD | 16 | 264 | 249 | 4.22958E-89 | ||
| TIGRFAM | 16 | 584 | 569 | 9.4E-167 | ||
| SUPERFAMILY | 20 | 355 | 336 | 9.61E-42 | ||
| Gene3D | 293 | 462 | 170 | 6.9E-57 | – | |
| SMART | 294 | 459 | 166 | 1.0E-48 | ||
| SUPERFAMILY | 294 | 482 | 189 | 5.44E-53 | ||
| Pfam | 295 | 455 | 161 | 8.4E-31 | ||
| CDD | 300 | 453 | 154 | 1.72783E-62 | – | |
| SUPERFAMILY | 467 | 587 | 121 | 4.45E-29 | ||
| Gene3D | 472 | 590 | 119 | 2.2E-26 | ||
| Pfam | 472 | 549 | 78 | 2.9E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | 1-deoxy-D-xylulose-5-phosphate synthase activity | Catalysis of the reaction: D-glyceraldehyde 3-phosphate + H(+) + pyruvate = 1-deoxy-D-xylulose 5-phosphate + CO(2). | ||
| Biological process | Terpenoid biosynthetic process | The chemical reactions and pathways resulting in the formation of terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure. |
Expression pattern of LotjaGi1g1v0387200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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