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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0387200 |
| Transcript ID | LotjaGi1g1v0387200.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 1-deoxy-D-xylulose-5-phosphate synthase; TAIR: AT5G11380.1 1-deoxy-D-xylulose 5-phosphate synthase 3; Swiss-Prot: sp|O78328|DXS_CAPAN Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic; TrEMBL-Plants: tr|K7KTK7|K7KTK7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0387200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:87050056..87055501) extracted from Lotus japonicus Gifu genome v1.2.
ATTGATAGAGTATGTGCACGGTCTGATATTGATGATTTTGACTGGGAATGGGACGAAGTTCCGACACCTATTCTTGACAC GGTTGAAAATCCTCTTTGCTTGAAGAACCTTTCTCTTAAGGTTGGTTGTAAGCTTGTAACCATTCTTTCTTCATTTTGCT TTTACATCACATATACTTGCAATCACAAAGCATCTAAATACCTAAATATTTGTGCTTGCAGGAACTGAAACAACTAGCTG CTGAAATCCGTATGGACCTATCTTCTCTTATGTCAGATACACAAATATCACCGAAAGCAAGTATGGCAGTAGCGGAGCTG ACGGTTGCAATGCATCATGTTTTTCATGCTCCAGTAGACAAGATATTGTGGGATGTTGGGGATCAAGTAAGATTTTAAGT GATAAACAAAAATGCAAGGGCGTCTTTCGTATTTTAAATTTCCCCTCTCCTTTGGGGTGGAAAGTTGAATGTGAATCAAT GATTGACCTATTTTGGTTAATGTAAACTATTCATTATTTGTGTGCAGACATATGCACATAAGATTCTTACAGGAAGGCGA TCACTTATGAAGACAATGAGACAAAAGAATGGTCTTTCTGGTTTTACATCCCGATCTGAGAGTGAATATGATGCATTTGG TTCAGGTCATGGGTGCAACAGTATTTCTGCTGGACTTGGTAGTTTATAAATCCTTTCCCGTTTTGATAATATTAGTTTCT TATTACATCATTCAGGTTCATATTTTATTTTTTTGTCATTTGCTGTATGAGTGTATGTATTGTAGGTAGGTTGATAAATT ATATTTTTTCTGCTGTAAATAGGGCCACTTCACGTTTTACTTCTTAGATGAATTAATAAAATTCCTACAGGTGAAGTTTC AAATTATCTCAAACTCATATTTGGTGTATTCTATTTCAGGCATGGCAGTGGCACGGGATATTAAAGGGAGGCGAGAGCGA ATAGTTGCAGTTATCAGCAATTGGACTACGATGGCTGGTCAGGTGTATGAGGCAATGAGCAATGCAGGATGTTTGGACTC AAATCTGGTGGTGATTTTGAATGACAGCCGTCACTCTTTACTCCCCAAAATCGATGAGGGCCCAACAACTTCTGTCAGTG CCCTGTCTAGTACCCTAAGCAGGCTCCAGTCCAGTAAATCTTTCCGAAGATTTAGAGAAGCTGCTAAGGTATGTTTCTAT TTCCCCTCCTGTGTAGAGAAATAATGCTAGAAAGCTATAAATTCGTCTTCAGCATTTGTTGCTGACATGCAGCCGCATGG TCCATATGACAATGCCACGCCATTCATGTTGTTGATTAGCCTCATTTTGTTGGTGTAATCTTCGCTTTCGCTCCTTCCAT GGGGGTTCTGTCCTCAGGGGCTTCTTGTGGATAATATAAATACTTTATTTTTCAAAAAGAAAAAAATTGGCATGCTAAAT GACTTATAATTCAAAATGGATTAGTACATGGACTGTTATGTATAATTTGTGGCCTGCCAAAAATACTCATCACTTTACGT TTTAATTTATTGTGACAACTGAGATCTTTCTGTGTGCATTGAGAAAGATAAATAGAAGTGCAAATCTCCCCCTCCCAAAC GCTTGTGCGTATGTGCATTTTTACTCTTAGTGTTTCCATGTTACCTTCTCATTCAACATAAGTGATGCGTCTAATAAGTA ACAAAGATAGTCCTTCTTTAAGACCCCAATTTTCATATCTTCATGCCCTATGCTTCATATTCACATTATGTTTAAGTGAT TGGTAATTCGTCTGCTTTATCACAGGGTGTTACTAAACGAATTGGTAGGGGTATGCATGAATGGGCAGCTAAAGTTGATG AATATGCCCGTGGTATGATGGGTCCACTAGGTGCTACTCTTTTTGAAGAGCTTGGATTGTACTACATTGGACCAGTGGAT GGACACAATATGGAAGATCTAGTATGTGTGTTGCAAGAAGTAGCATCCCTGGATTCAATGGGTCCTGTGTTAGTTCATGT GATAACCGATAAAAATCAGGGAGTAGAAAACAATCAGAAAAGTGATATAACGGACAGGCATCAGAATGGTACTAATTTCT ATCGCAATTGTATTGCATATGCTCCATTCCATGTCATATCTTCTTGTGTGATTGCTTATCTTGCCTATACTGATCTTACA CTCTAGTTTCGTTTTTCTTGGGTTTTCCTCTTTCTCTCTCTTTCCCATTTGAGTTTATTTCAGATGCTTAAGCCTTTCAG AAAGTGAAATGAATCCCTTCATTATTGATTAGCTTAAATATAGACCCTATGCAATAACATTATGATAACTTATAAAGGAC ACGATGCTCCATAAAACAACCAAGTCTCATCTTACTAGGTAGAGTTTGCTTCATGGATAAAAGGACTCCATTGGGTTCTG TGAAAAACTAAAATTTGATTAAATCCTTTTAATATGCTTTTCAAGCCTTTTGGCCTTTTCTTAATCTGAGCTGAAGCAGC ACTGCATTTATTTGGCTTCTTATCTAGGTTCAGGTGGATACAATTAACATTTCATCTAGGTGTAGTACAAATGCCTTAAA AAATTTAAATGATATGTAACCAAACATTTATTTGTTTCCTATGTAATTTTTCAGATTCTGTTGAAACTGATTTTTTAAAC CATGATGTTCGCCCTCAAGCGTATGGTGATTGCTTTGTGGAGACTTTGGTTGCAGAAGCAGAGAAAGACAAAGATATTGT GGTTGTTCATGCAGGAATGTTGATGGAGCCATCACTTGAACTGTTTCGAGAAAAATTTCCAGATAGATTTTTTGATGTGG GAATGGCTGAGCAACATGCTGTGACATTTGCTTCTGGTTTGTCATGTGGTGGATTGAAGCCATTTTGCATTATACCTTCT TCCTTCCTACAAAGAGCCTATGACCAGGTCTGACCCAATTTCAGCTTAAACTAACATGATAACCACTACCTGTTCACAGA AAATCAGAATTTCTTGAAAAATGGAATATTTTTAGTTCATATAAATTATTTAATTAAATAATTTCTGAAAAAAAGGAATC AAGGGTAAAAGATACATCTGGAAACATGTTAAACAGTAAGAAGCATTGCAGCAATACTATTATTGTTATATTATGAATAG AGAGATAGAAAAAAATGAAAGTAGTAACAGTACTGCATATCTGGTGCATGCGCTGCCAAGTTGTAAGGATTGAAGGGGAT TTTACTTTATGAACCTTCAGGGAGTTTTATAGAACTGGACCAGAAATGGAGAAGAAGAAAGAATTCTTTATTGAAAAGTA AGAAACTGTATACAATTCTCTAGCATTTGAGAGGTTAGAACTCTCCCAAAACAGATCCTATTTCCAGAATATCCTAACTA GTTAACAGCTGCCACATAACCCAAGCAACCTCTAAGCTGATTGCCATCTCATTCACAAACAAACTGCCTAATACATTGAT ATGTTAAGATCCTCCCTCCCATAATCTAGGTCCATTAGTTGGCCTAGTATCTAATTCTATCAGAGTTTGGTACTCGAGGA TCTCTGACAGCATTAGCAAAACTATGTAACCTGAGAAAATAGATATCATATTATTATGTGTATTTTTAATTTGCAATTGT GCGTGGATAGGTGGCATTGTGATTAAAACAACCTGATCTGACTGATAATTTTTTTTTGTAAATCCAACAAAATGTATTGG AATAGACAAAGGCCCCGTTTGGAAACACAGCTTAATTAAGCGCTTATGGTCATAAGCGCTTATGACATAAGCACTTATTC ATAAGCTATTTTAAAATATTTATTGCAATAAATCGAAAATGAGCTATATATAAGCATGAGCTCTTTTTCATAAGCTATCC TGAGTAGCTTATGAAAATAAGCTCAAAACAGCTTATGGCCTACCATAAGCTGTTTGCATAAGCTCTCCCAAACACCGGCA TAAGAGCTTATACTATCAGATAAGCTCAAATAAGCTCTTCCAAAGGGGCCTTTCTCAGTAGAAAAATTTCCCCAATGGCC TTTCTACTTGTATGCAGAATGGATAGCTTGTACACTACACATTATATAATGATTTTATACTAGTAATTACAGTTTTTAAC ATGTTAATTGTTACATGTCCGTATAGGTGGTTCATGATGTTGATCAACAGAAAATTCCAGTGCGTTTTGTCATTACAAGT GCGGGAGTGGTTGGTTCTGATGGTCCCCTCCATTGTGGGGCATTTGACATAACCTTCATGTCATGCTTGCCAAACATGAT AGTCATGGCGCCATCTGATGAGGTTGAACTCATGCACATGGTGGCTACTGCTGCTCAAATCAATGATCGGCCCGTATGCT TTCGGTATCCTAGGGGTGTCTTGGTTGGGGAAGACTACACTATACCCAATGGAATCCCCATTAAGGTAATTGGGTGATAT AGTTTTTTTTTTTCTTCTTTTTTTGGCTGTATTGTGGGTTTTGTTGAAACACATTACACATTGCTTTAAAAGGGTGAACT AATCTAGGGAAGTGCCATTCATTTTTACCTTCCCCTAAATTTTATCAAAGTATTATATAGCATATTGTCCTCCTTTAAAT TTGGAGCGGTTGTATGTATTCATATACAGATTGGAAAAGGAAGAATTCTTGCTGAAGGTAAAGATGTTGCTTTACTGGGA TATGGATCAATGGTTCAGAACTGTCTGAAGGCTCACTCACTTCTTGCAAAGCTTGGTGTTGAGGTGACTGTTGCTGACGC AAGGTTCTGCAAGCCCCTTGACATCAAGCTTCTGAGGCATCTTTGTAAACACCATTCTTTTCTAATTACTGTTGAGGAAG GTTCCGTAGGGGGATTTGGTTCCCATGTTGCTCAGTTTATTGCACTGGATGGACTGCTTGATAGAGGAATCAAGGTAATT CGAGTAAGCTAGGTGAAATGATTATATTTGTTTTATGGTTTTTAGTATATTTGGGCCTAGGAACGTGTTATTGGCTTCTA TTTATAACTGGCTTAAAAATATCAGATTAAAGATAACTGAATTTCTTTCATTTGTATACCTCTCTGAATTTCTTGGTGGG AATGTATAGCTTTTTTTTTATAGGCAACATGATTGATAGGTGGCCCCTTAGTGTGTAATAGCAAGTTAAGTATCATACAA CAAATTGTTTATTTTAATTTCGAAGGTCATTTGGCAAATTCATGTATAGTGTTTGGTGCATTTTTAAGTATACATAGCCC TTACATATCTTGCGCAGCAAAGTATGACTGAATTTTGCATTTGGTCAAAGTTTCTGATATTCTGTTTCATATTTTGTGGA TCAACTCTTCCAGTGGCGACCAATTGTCTTACCAGACAGATACATTGAGCATGCATCTCCAAATGAGCAGCTTGACCAAG CAGGGTTGACTGGACATCACATTGCTGCAACCGCGTTGAGTTTGCTCGGCCGTACCCGTGAAGCTCTCCAGTTTATGTGC TTCTGA
CDS sequence (LotjaGi1g1v0387200.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACCTATCTTCTCTTATGTCAGATACACAAATATCACCGAAAGCAAGTATGGCAGTAGCGGAGCTGACGGTTGCAAT GCATCATGTTTTTCATGCTCCAGTAGACAAGATATTGTGGGATGTTGGGGATCAAACATATGCACATAAGATTCTTACAG GAAGGCGATCACTTATGAAGACAATGAGACAAAAGAATGGTCTTTCTGGTTTTACATCCCGATCTGAGAGTGAATATGAT GCATTTGGTTCAGGTCATGGGTGCAACAGTATTTCTGCTGGACTTGGCATGGCAGTGGCACGGGATATTAAAGGGAGGCG AGAGCGAATAGTTGCAGTTATCAGCAATTGGACTACGATGGCTGGTCAGGTGTATGAGGCAATGAGCAATGCAGGATGTT TGGACTCAAATCTGGTGGTGATTTTGAATGACAGCCGTCACTCTTTACTCCCCAAAATCGATGAGGGCCCAACAACTTCT GTCAGTGCCCTGTCTAGTACCCTAAGCAGGCTCCAGTCCAGTAAATCTTTCCGAAGATTTAGAGAAGCTGCTAAGGGTGT TACTAAACGAATTGGTAGGGGTATGCATGAATGGGCAGCTAAAGTTGATGAATATGCCCGTGGTATGATGGGTCCACTAG GTGCTACTCTTTTTGAAGAGCTTGGATTGTACTACATTGGACCAGTGGATGGACACAATATGGAAGATCTAGTATGTGTG TTGCAAGAAGTAGCATCCCTGGATTCAATGGGTCCTGTGTTAGTTCATGTGATAACCGATAAAAATCAGGGAGTAGAAAA CAATCAGAAAAGTGATATAACGGACAGGCATCAGAATGATTCTGTTGAAACTGATTTTTTAAACCATGATGTTCGCCCTC AAGCGTATGGTGATTGCTTTGTGGAGACTTTGGTTGCAGAAGCAGAGAAAGACAAAGATATTGTGGTTGTTCATGCAGGA ATGTTGATGGAGCCATCACTTGAACTGTTTCGAGAAAAATTTCCAGATAGATTTTTTGATGTGGGAATGGCTGAGCAACA TGCTGTGACATTTGCTTCTGGTTTGTCATGTGGTGGATTGAAGCCATTTTGCATTATACCTTCTTCCTTCCTACAAAGAG CCTATGACCAGGTGGTTCATGATGTTGATCAACAGAAAATTCCAGTGCGTTTTGTCATTACAAGTGCGGGAGTGGTTGGT TCTGATGGTCCCCTCCATTGTGGGGCATTTGACATAACCTTCATGTCATGCTTGCCAAACATGATAGTCATGGCGCCATC TGATGAGGTTGAACTCATGCACATGGTGGCTACTGCTGCTCAAATCAATGATCGGCCCGTATGCTTTCGGTATCCTAGGG GTGTCTTGGTTGGGGAAGACTACACTATACCCAATGGAATCCCCATTAAGATTGGAAAAGGAAGAATTCTTGCTGAAGGT AAAGATGTTGCTTTACTGGGATATGGATCAATGGTTCAGAACTGTCTGAAGGCTCACTCACTTCTTGCAAAGCTTGGTGT TGAGGTGACTGTTGCTGACGCAAGGTTCTGCAAGCCCCTTGACATCAAGCTTCTGAGGCATCTTTGTAAACACCATTCTT TTCTAATTACTGTTGAGGAAGGTTCCGTAGGGGGATTTGGTTCCCATGTTGCTCAGTTTATTGCACTGGATGGACTGCTT GATAGAGGAATCAAGTGGCGACCAATTGTCTTACCAGACAGATACATTGAGCATGCATCTCCAAATGAGCAGCTTGACCA AGCAGGGTTGACTGGACATCACATTGCTGCAACCGCGTTGAGTTTGCTCGGCCGTACCCGTGAAGCTCTCCAGTTTATGT GCTTCTGA
Protein sequence (LotjaGi1g1v0387200.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDLSSLMSDTQISPKASMAVAELTVAMHHVFHAPVDKILWDVGDQTYAHKILTGRRSLMKTMRQKNGLSGFTSRSESEYD AFGSGHGCNSISAGLGMAVARDIKGRRERIVAVISNWTTMAGQVYEAMSNAGCLDSNLVVILNDSRHSLLPKIDEGPTTS VSALSSTLSRLQSSKSFRRFREAAKGVTKRIGRGMHEWAAKVDEYARGMMGPLGATLFEELGLYYIGPVDGHNMEDLVCV LQEVASLDSMGPVLVHVITDKNQGVENNQKSDITDRHQNDSVETDFLNHDVRPQAYGDCFVETLVAEAEKDKDIVVVHAG MLMEPSLELFREKFPDRFFDVGMAEQHAVTFASGLSCGGLKPFCIIPSSFLQRAYDQVVHDVDQQKIPVRFVITSAGVVG SDGPLHCGAFDITFMSCLPNMIVMAPSDEVELMHMVATAAQINDRPVCFRYPRGVLVGEDYTIPNGIPIKIGKGRILAEG KDVALLGYGSMVQNCLKAHSLLAKLGVEVTVADARFCKPLDIKLLRHLCKHHSFLITVEEGSVGGFGSHVAQFIALDGLL DRGIKWRPIVLPDRYIEHASPNEQLDQAGLTGHHIAATALSLLGRTREALQFMCF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 613 | 612 | 0.0 | – | |
| PANTHER | 2 | 613 | 612 | 0.0 | ||
| Pfam | 16 | 259 | 244 | 1.0E-77 | ||
| TIGRFAM | 16 | 601 | 586 | 2.1E-172 | ||
| CDD | 16 | 264 | 249 | 8.2049E-89 | ||
| SUPERFAMILY | 20 | 355 | 336 | 1.05E-41 | ||
| Gene3D | 293 | 462 | 170 | 7.3E-57 | – | |
| SMART | 294 | 459 | 166 | 1.0E-48 | ||
| SUPERFAMILY | 294 | 482 | 189 | 5.44E-53 | ||
| Pfam | 295 | 455 | 161 | 8.8E-31 | ||
| CDD | 300 | 453 | 154 | 2.75873E-62 | – | |
| SUPERFAMILY | 467 | 603 | 137 | 2.88E-35 | ||
| Gene3D | 472 | 604 | 133 | 5.2E-35 | ||
| Pfam | 472 | 595 | 124 | 8.6E-32 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | 1-deoxy-D-xylulose-5-phosphate synthase activity | Catalysis of the reaction: D-glyceraldehyde 3-phosphate + H(+) + pyruvate = 1-deoxy-D-xylulose 5-phosphate + CO(2). | ||
| Biological process | Terpenoid biosynthetic process | The chemical reactions and pathways resulting in the formation of terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure. |
Expression pattern of LotjaGi1g1v0387200.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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