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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0389200 |
| Transcript ID | LotjaGi1g1v0389200.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine/threonine protein phosphatase 2A regulatory subunit B; TAIR: AT5G25510.1 Protein phosphatase 2A regulatory B subunit family protein; Swiss-Prot: sp|Q93YV6|2A5I_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform; TrEMBL-Plants: tr|A0A0L9UH95|A0A0L9UH95_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0389200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:87269230..87271695) extracted from Lotus japonicus Gifu genome v1.2.
ATGCTGAAGCAATTTCTCAGTAAGCTTCCTCGCAAGGGAGCGAAACCTGACTCGGACGAGTCGTGCCGTGGTGACCCGTC ACGCTCTAGCACCTCCCGGGACGATTCGCATCACGCGGCAGGTAGGAACAACCGGTCACATGGCGGCGGCGGAGGCGGGT CCTCTGCGAAACGAACCTCGTCTTCTGCGGTTTTCCCGGCGAGTACCGTGTCGGTGATTGAACCGTTGGTGCCGTTCAAG GAGGTTCACAGCTCGGAGAGGATGAACCTGTTTGTGAGCAAGTTGAGTCTCTGTTGCGTCACGTTTGATTTCACCGACCT TGGTAAGAACACGGTGGAGAAAGATGTGAAGAGGCGAACATTGGTTGAACTTGTTGATTTTGTGTCTTCTGTTGGGTCTG GGAAATTTGTTGAACCTGCTATCCTTGCTATGTGTAGAATGTGTGCTATTAATCTCTTTCGTGTTTTCCCGCCGCATTAC CGGGCGAACCGGGGTGGTGAGCATGATGATGATGAACCGGTGTTCGATCCTGCTTGGCCTCATTTGCAGCTTGTGTATGA ATTGCTGCTTAAATTTATTACATCTTCATGCCTTGATGCCAAGGTGGCCAAGAAGTATTTCGACCATTTGTTTATTTCTA GGTTGCTCGAGTTGTTTGATTCGGAGGATCCTAGGGAAAGGGATTGTTTGAAAACAATTCTGCATAGGCTTTATGGGAAG TTCATGGTGCACAGACCCTACATTCGAAAATCTATGAACTATGTGTTTTATAGGTTTGTGTTTGAGACTGAGAAACACAA TGGGATTGCTGAGTTGTTGGAGATTTTCGGGAGCGTAATCAGCGGGTTCGCTTTGCCCTTGAAAGAGGAACACAAGATCT TCTTGTGGAGAGTTTTGATCCCCTTGCACAAGCCAAAGTCTTTGGGGGTGTACTTCCAACAATTGTCATACTGTGTTATG CAGTTTATAGAGAAGGAGCCCAAGTTAGCGAGCATTGTGATTAGGGGTTTGTTGAGATTTTGGCCAATAACATATAGTCA GAAAGAGGTGATGTTCCTGGGTGAGCTGGAAGAAATATTGGAAGCAATTAACATGGTAGAGTTTCAGAGGATCATGGTCC CATTGTTTTGGCGGATTGGATGCTGCATTAGCAGTTTGCACTTTCAGGTACACTTATAGTGAATCCATTTGGCAAATCTT CATTATTTGGATTGTCCTTTGTTATTTTTGTTAGAGGAATGAAATCTAAGCTTTATAGCTATAGTTTGGATGGTGCCCTA GATCTAAAACTCTAGCAGTTTATTGAAAACTTGCTTCGGATGTGAAACTTTTAGTATTCCAAGATAGTTTTGTTATTCCC AATAATAGAGTTCGGTAACAAAGAAATTCTTCCAAGTCACACCTTCGTTGAGCTCGTAACAATCCAATTAGGTCCCCGGG TGAAAATACATTGACATTCCATCTTCTGACACCATATTCTAGCATGACACGATTATTAAACAAACTAGCAAAGACCCCCA TATGATCTCTATAAAATGCTGCATCATAGAAACTAATATAATCAATATGAATCTCGAGAGTGGGTGGTTGACCACTGCCC ATGTCCTGGAGTCTCTCTGGCTGAGGAGGGGCTTGCAATTTTTGCTTCAGGTTCAAAGTCAAAACGTGTTCTCAAGGTGC TTTTGTTCATTTGCATTAATTTGGGGTCGAGCTCAGAGATCATCAATAGGGTATCAAAGTAGTTCATTTAATTTCAAGTT CCTTGAACTTCCTCTTTAGAATGGCATATTGCCTTGTGAAAAAACAAAACTGTGATTCTTTTTACCTAGATTGGTTTATG TATCTTTTGAGAATCACTTGTTGCCTTTAACTTGTTTGTTAGTTCCTAAATTACACCCTTTTCATAATTCAACACTGATT GCTTCAGGTAGCTGAAAGAGCCCTTTTCTTATGGAACAACGACCATATTGTCAACTTGATTGCGCACAACCGTCAGGTGA TCCTGCCCATCATACTTCCAGCTTTAGAAAGGAATTCTCAAAACCACTGGAACCCGGCAGTGTTCAACTTAACACACAAT GTCAGAAAGATGTTCATGGAGATGGATGAGAAGCTGTTCCTGTCTTGTCATTCTCAGTTTAAGGAGGAAGAAGAAATGCT AAACTCGGAAGCCGAGAAGCGGAAGGAAGCCTGGAAACAACTAGAGCATGCAGCCAGTCTCAAGCCTGTAGTTGGAAATA CTGCTGTTTTAGTGTCTCCAATTTGATAACCACAATCATCATCTTTTTCCTCTTGTTATGGTTAGAAACCATAAACAAGA AACATGGCTAATGGCTGTTATTGAGAGTAGCTTCTCTTTTTGGGGTCCTATATGCTTTTGATGCTTATGGCAGCCAAATC TTGTAACTTGTAAGTTGTAATGTGCATTTGATTAAGACTGTATAATAGCAACTTGCCTCTTCCTGA
CDS sequence (LotjaGi1g1v0389200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGAAGCAATTTCTCAGTAAGCTTCCTCGCAAGGGAGCGAAACCTGACTCGGACGAGTCGTGCCGTGGTGACCCGTC ACGCTCTAGCACCTCCCGGGACGATTCGCATCACGCGGCAGGTAGGAACAACCGGTCACATGGCGGCGGCGGAGGCGGGT CCTCTGCGAAACGAACCTCGTCTTCTGCGGTTTTCCCGGCGAGTACCGTGTCGGTGATTGAACCGTTGGTGCCGTTCAAG GAGGTTCACAGCTCGGAGAGGATGAACCTGTTTGTGAGCAAGTTGAGTCTCTGTTGCGTCACGTTTGATTTCACCGACCT TGGTAAGAACACGGTGGAGAAAGATGTGAAGAGGCGAACATTGGTTGAACTTGTTGATTTTGTGTCTTCTGTTGGGTCTG GGAAATTTGTTGAACCTGCTATCCTTGCTATGTGTAGAATGTGTGCTATTAATCTCTTTCGTGTTTTCCCGCCGCATTAC CGGGCGAACCGGGGTGGTGAGCATGATGATGATGAACCGGTGTTCGATCCTGCTTGGCCTCATTTGCAGCTTGTGTATGA ATTGCTGCTTAAATTTATTACATCTTCATGCCTTGATGCCAAGGTGGCCAAGAAGTATTTCGACCATTTGTTTATTTCTA GGTTGCTCGAGTTGTTTGATTCGGAGGATCCTAGGGAAAGGGATTGTTTGAAAACAATTCTGCATAGGCTTTATGGGAAG TTCATGGTGCACAGACCCTACATTCGAAAATCTATGAACTATGTGTTTTATAGGTTTGTGTTTGAGACTGAGAAACACAA TGGGATTGCTGAGTTGTTGGAGATTTTCGGGAGCGTAATCAGCGGGTTCGCTTTGCCCTTGAAAGAGGAACACAAGATCT TCTTGTGGAGAGTTTTGATCCCCTTGCACAAGCCAAAGTCTTTGGGGGTGTACTTCCAACAATTGTCATACTGTGTTATG CAGTTTATAGAGAAGGAGCCCAAGTTAGCGAGCATTGTGATTAGGGGTTTGTTGAGATTTTGGCCAATAACATATAGTCA GAAAGAGGTGATGTTCCTGGGTGAGCTGGAAGAAATATTGGAAGCAATTAACATGGTAGAGTTTCAGAGGATCATGGTCC CATTGTTTTGGCGGATTGGATGCTGCATTAGCAGTTTGCACTTTCAGGTAGCTGAAAGAGCCCTTTTCTTATGGAACAAC GACCATATTGTCAACTTGATTGCGCACAACCGTCAGGTGATCCTGCCCATCATACTTCCAGCTTTAGAAAGGAATTCTCA AAACCACTGGAACCCGGCAGTGTTCAACTTAACACACAATGTCAGAAAGATGTTCATGGAGATGGATGAGAAGCTGTTCC TGTCTTGTCATTCTCAGTTTAAGGAGGAAGAAGAAATGCTAAACTCGGAAGCCGAGAAGCGGAAGGAAGCCTGGAAACAA CTAGAGCATGCAGCCAGTCTCAAGCCTGTAGTTGGAAATACTGCTCAACTTGCCTCTTCCTGA
Protein sequence (LotjaGi1g1v0389200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLKQFLSKLPRKGAKPDSDESCRGDPSRSSTSRDDSHHAAGRNNRSHGGGGGGSSAKRTSSSAVFPASTVSVIEPLVPFK EVHSSERMNLFVSKLSLCCVTFDFTDLGKNTVEKDVKRRTLVELVDFVSSVGSGKFVEPAILAMCRMCAINLFRVFPPHY RANRGGEHDDDEPVFDPAWPHLQLVYELLLKFITSSCLDAKVAKKYFDHLFISRLLELFDSEDPRERDCLKTILHRLYGK FMVHRPYIRKSMNYVFYRFVFETEKHNGIAELLEIFGSVISGFALPLKEEHKIFLWRVLIPLHKPKSLGVYFQQLSYCVM QFIEKEPKLASIVIRGLLRFWPITYSQKEVMFLGELEEILEAINMVEFQRIMVPLFWRIGCCISSLHFQVAERALFLWNN DHIVNLIAHNRQVILPIILPALERNSQNHWNPAVFNLTHNVRKMFMEMDEKLFLSCHSQFKEEEEMLNSEAEKRKEAWKQ LEHAASLKPVVGNTAQLASS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 499 | 499 | 8.6E-300 | – | |
| MobiDBLite | 1 | 60 | 60 | - | – | |
| PANTHER | 1 | 499 | 499 | 8.6E-300 | ||
| PIRSF | 6 | 500 | 495 | 3.3E-225 | ||
| MobiDBLite | 10 | 42 | 33 | - | – | |
| Pfam | 78 | 485 | 408 | 1.1E-179 | ||
| Gene3D | 84 | 484 | 401 | 5.7E-173 | ||
| SUPERFAMILY | 89 | 481 | 393 | 7.57E-150 | ||
| Coils | 461 | 481 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Protein phosphatase type 2A complex | A protein complex that has protein serine/threonine phosphatase activity that is polycation-stimulated (PCS), being directly stimulated by protamine, polylysine, or histone H1; it constitutes a subclass of several enzymes activated by different histones and polylysine, and consists of catalytic, scaffolding, and regulatory subunits. The catalytic and scaffolding subunits form the core enzyme, and the holoenzyme also includes the regulatory subunit. | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. | ||
| Molecular function | Protein phosphatase regulator activity | Modulates the activity of a protein phosphatase, an enzyme which catalyzes of the removal of a phosphate group from a protein substrate molecule. |
Expression pattern of LotjaGi1g1v0389200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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