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LotjaGi1g1v0389800.1

Overview

Field Value
Gene ID LotjaGi1g1v0389800
Transcript ID LotjaGi1g1v0389800.1
Lotus japonicus genome version Gifu v1.2
Description Photosystem II reaction center PsbP family protein; TAIR: AT5G11450.2 PsbP domain protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein); Swiss-Prot: sp|P82715|PPD5_ARATH PsbP domain-containing protein 5, chloroplastic; TrEMBL-Plants: tr|I3T9M5|I3T9M5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0389800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:87314235..87321528) extracted from Lotus japonicus Gifu genome v1.2.

AAAATTACCAAAAAAATTCTACCAGCTCTGAGAAAAGGTGATTGGCATCTCAGAAGATAGATGTTAGAAAGTGAGATAAT GTTGTTGCAGTGTGATGGAAGTTCCCAGTGATGTCTGTAATGCATGTATTGTAGAAACAACAACAACTGTGTTGTGATTT TCAGCTACTAACTAACCAACCATGCCAATGGTTTCAGTTTCACACTCTCTCACTCCTTCATTCTCTTCCTTCTTCCCCAA TCCTAACAACAACCTTATCTTCAGGTACACACCACCCACTTTGATTTTAACATATTTTGTGTTCTTTTTCTTCTTAAGTT TCCTCTTTTTGTTCTTCTTCTATCATTGTTGTTACTGTTTTCTCTGAAACCATTTACCTATGTTCTTCAGAAACAACACC AGGGCAATCCTTAACCAAAACAAATGCTCATCATCAGAGGAAAACTCAAACTTTTCAAGCTCTTCTAAAAAACCCACTTC GCAAAATTGGATTTTGAGAAGGGATTTGATGGTTTCAGCTCTTACTTCTGTTTCTCTGACTTCTGGTCTCTTGCAGTCTC CGGGTAATTTTGGTGTTTGTTGAGAAAAGACAGCTATGTGCTTTAACATTTGCTTTATCACTGTAATTTCTAAAACTCTT ATTCTGTCTTGCAGTGACTCTTGCTGAAGAAGAGCCTAACATGGCTACATTTGTAGATGAAACAAATGCCTATTCTTATA TGTACCCTCTTGAGGTTCCTTCTAAGAAATTTGTGTTCAAATGGTATGTCAATTACTTACATTTTATTTATTTCTTCATC TAATAGCTAAGGTTCCATATCTCGAGTCATTTGGCTTAAGTACTACTAGACTACAACCCGCGCGTTGCGCGGTGGTAAAA TTATATTAATTATGCAGTTAATGTAAAATTGAAATAGATAGATGATTATCTCCGTCAAGTATGAACTATATGGTGCTCTA AAAATAAGAATGAACAATTTAGAATTCATTTCAATAGTGACCAACACCTAAATGCAAAAGTAGAGTTAGTAGTTTATTGG GAATAAATTTGTACAACTAAATAAGATATAGCATTGGATAAATTTTTAACCATCGTCCTAGAAATAAAGGCCAAATTCAT GTTGGATGAAGACATAACCCAAATAAAGAAGAATGAAATTCACCACCAATTATTTACTTTACACTATAAATATGAAAGCT TAACAAATTTGCAATACACAAACACAAATGTCCTCATAAGAGTCATTGTTCTGGTTACCCAAATTCCTTATCAGGCTCTA AGAAGTTTTCCCATCTCAGAATCCCAAACATGAATATAACATCTTCTCTAGCACTGATAATGGTGTTGTTGAGTGGTTCT AAAATAAGCTCAATTGATTCTTCATTCTGGACCCTTAGTCGCAAGAACTGATTCACAGAATCACAAGTCTAGTATGAGGG ATCCTTGGTAGTGCATTTAACGTGGATTGCAGAAGAAAGTTAAACGCACCGATAACCTCTGATCTGATAACCTTTTCCAT AACCAAAATCTGTTGTTTTGTTGTGCCTAAAAGTTCTCGACTCAAGGGCCCACTCAAACTCTTGTTTCCATTATTTCTGC GTCAAAATCAGCATCATAGCTCTGCACGAAAAAATAGATTAGGTTTTCAAAACTTTTGGATTCCTATCTAAATTAACGAC ATAGGTGTAGAATGTAGATAACTAAATGCTACTACAATAAACCTTCCACAGTATGTCGGTATCCCTTAACCTTTAATTAC TCTATAAATATTATCTGCTTTCGTTCTTATCAATCCAGATAAACAGCCCCAATCTTTTTCTCATTCCATTTACCTTGAGT TGACCTTCCCAGCCTTACATATCTAGTTCCTTCTCAATCATCACCAATCAAAACAATATTTTGGAAAATGGTGTCTCACA TACTTGCAGATTGGATTTTTTACCAGTTGCTTGCTAAATCATGGTGTCCCTCACACTTGCAGATTGTATTTTGCACCACA TGTATGCTAATTCATGTTATACAACTGCAAGTAAAATGAAATGCTATGGTTTCCATTTGAGCTATATGTCATCTAAGGCA CCACACCAATCTTTTTCCCTAGTATTACCAAATCTCACTTGGAGGTTATTTAACAACATGCAGGGAGCACTTGTATGAAA GAAAGTGCAAGGAGCAGTGCCTAATAGGAAAATCTTAAAAGTAAATATAAGAAAATCTAGAAGGTCTCACTCTATATGTA TTTTGTGGTCACTTCCTCATCACTCCAAACAAATTGTCTCAGTCTTCTTATTCCATATACTACCTTAACTATCTCAGCCT GGCATTCTTAGCTTCTTCTCAAACATCACCAACCAAAACACAATTTTGAAAGACTGAAAACTTAAAATGGTGTCTCTCAC ACTTGCATACTGGATATCGTACCAGCTGCTTACTTAATCATGTTATACAGCTGCAAGAAAAATGAAAAGTTAATGTTTCC ATTTGGGCTATCTGTCAACCAAGTCACCACACCAATATTTCTCTTTCCCTAGTATTACCAAATGTCAGTTGGAGGTTATC TAACAACATGTAGGTAGCACTTGGAAAATGCAAGGACCAGAGCCTAATAGGAAAATCTAAAAAGTACATATAAGAAAATC CAAAAGGTCCCAAGTCTAAAAATATTTTCTACTAACTTCCTCTCATCACTCCACACAAACTGACCCAATATTTTTATTCC ATCTACTGCCTTGACTATCTCAGCCTTGCTTTTCTAGCTCCTTCTCAAACATTACAACAAAACAAAATTTTGAAAGTGTA TGATGTTCCCAATGAGTTTATACAGTTATCCTATAGATACTAATCCATATGTGATTCCTCTTGCATCTGATTGACTTAGA CGATAGATATCAAGTGTATGTTATTTTTAGAGCACTCCTCCAACTTTTGTCTTGTTCTATTCTTTGGATTTATTAGACAA TGAGTAAAAGCTCATGGTTAATACTTTCATAAACTTTTCTGGTTTAAGAGTAGAGGACATGGAAAGTATTTCAATGCTAA TGTCACCCATGTTTTATTTGGAAAATCCAAATCTCCTGGTTTTATATGGGGTTGTCTTCCCAAGTGTGCCAAGAGTGAAG TTGAAGGAATTCTCAAGCAGTATTTGAGGGCTGGAGTTGTTCTAGGCACAGAGTTGCATTCTGTTGGTTCCCACTTTAGT AGATAGACACAATAATCTCACAATTGATTCAAAAAGTTTCAAACAAACAATAAGCACAAGATACAAAGTCACATAAAAAC TCACCGAGGCATCAAAGCATCTCTAATATATGGGTATCTTGTATATGGCCTTTGTTGGGTCCAGGTGGGCCAGCATCCTG CCTGCTAGGTAGCGTTCGAAACGGGGCGCTGTCTGCTACGCTATAAGGAAATAACGTTGCGCCCTCACTAACACCAATTG GTTTTGGCGTAGTGGTAAGCGCGTGATCCTTCAGCCTTTGTTCACAACCATTTTCATGCGCGCCATTTCAACCTCTATAT TTCTTCTCAATCAAGAGACCCTTTTCAAAACTGTGGAGAAATGAATGTATCAAGTATAATATGAAACACATTAGTGAGCA CAAACATAGAAAAATACACTCTTAGAAAATGAAACAAAATGGGAGCTGAGCCTGAGGGGGCAACCAATAATGTTGAAAAC CTTTGGTGGCTAGCCATGACTCCCCTGTGCGAGTTGTCTTATTCATCTCCACAACTTCAACGCTATCAATTAAACTGTCA ATTTGATTCACCTATATAATAGATAGTAAAAATTGAAAAAATGCTCATATAGTTAGAAGAGAATTTTCAGAAGAAAGAAA GTTCTTTGAGAGGGAAGTCAGACAAATAAAAAAAGGAAGGCAAAAACAAATTATTTGAACGGGAAAAACCACTCACTCAA AACTATTTTAGTCGTTGGCCGTTCGTTTGAAGATGAGCTTACTGCATTAGTTGACAAAGGGCGACGAAGATGTTGGTGAA CCGATGGAGGTTCCTTAGGGAGTCGAGTCCAAGGGCGGCGACATTGCAGACGTCGAGGGATTTTAGGATCCGGTTGAGGG TGGCTTGCAGATCTGGGAGGGGTCATGACTTTCAGTGTAGCTTTGAATCAGAGGAACTCGTCGATTGCATAGAAAGGGGT AAAGGGAAAAGAAAAGGTGTAGGGTGTGATACGAACAAGAAGAAACCAAAGAGGAGATGTGTCCAAGGAATTGGAAGAAT TTGGAGGTGTCCACGTTGGATTATTTTTGATGTGGCAAAATCTGTATTATGTGGTGCTGATGTGTCAGCGTTACACTCCG CGCTTCACAATTCCTATATTATAATAGATTCGTAATGACTTGGGAAATCTGTTTATGAAATGTTTTTGATGCATACAATC GCGTCCGACTCCTCTAAAGTGAGAGACTCACTTTAGAATGTAAAGTAAGTCATCACGGTCATTGATTGAGTTGCTTTATT GACTTTTCAATGTAGGTAACACTATTAATGGTTGTGATAAATTACCTTCTAAAGTGACTCTCTCACTTTAGATGAGTGAA ATCCCATTCAACAATATCAGTAACATATCCAATGAGCCTCTTGTATCAATGGGACTAACATTCAGTGCTAACAGAACTAA AATTGGTTTACCACTATATTTGCTACTTGGAATTTTTCCTTCATTATTGTAGGAAGCTAACCTTTTCCATGTACTTAAAG GGTAGAATCGCGAAAGCCAGAACGATATTCATCAGCTGCACCACTTTCTCGTAAGTTTTATTGTTTTCCTTAGCAAGGCA AAATTCGATTTCATCAAAGAATTTTAGAATTGAGGCTATTCTCATCTGGAAATTGTTATCACTCCATTTTAGTTTAATAC ATATCAGCTTTTTCGTTGAACATTAAAATCTCTGAAGGATAGGAAGTTGTGACCTGCCAATACAAATTTTGAGCCTGTTT GGATATACAGTAAATAGCACTTATCAGAGCTAATCTACTAGAGAAAGCACTAGATAAGCTCCAATAAGTGTTCTTTGGTC TGTATCCAAACGAGATCTTTATGCAAAATGACTCCAGATGGTTGCTTTTGTAGTTTTCCTTTTCTGGATTAAAATTGCTC TGTAAATTTCATACAGCTAATGCACGGTTGCGCATTGTGTCCGAGCGTGTTGATATCATTGATAATGTCCTCATTTCTGT CACGGTATTTTTCCAACCTCAAACTTGTTACTTGAAGCCTCGTTTACCCATTCAATACTGTATCAGTTTTTTGTACTCAA TTCAGATAGGTCCTCCAAATCCGGGCCTTGTAAAATTGAACGACAAGAAGAAATGGACTGCAAAAGATGTTGCTGATTCA GTTTTAGCTGACAAATCTACACTGGTAACTGATCACTCCTCTATTACTCATGGATTTTTGTACTCATGCTGTTCATATTG TAATCGTTAATGTTGCTCCAAGTATTAATTGAAATTTAGATATTTAGTCATCATTCGTCACTCAATAGGGATCTTTATTG ACATCCTTTCAAATCTATTACAACATTTTGCAGCGAGTTACGTCAAGTCAGCGCCTAAGTGAGAGTTCAGTTCTTGATAC ACATACTGGTGAAGTAAGCTTCATGAGTAATCTTTATTTCTTTGAAGATAATGAATAATAAATATTCCAGAGATTTTTTT TACTACATTTACATGTTTAAGTTCAAATTTACGCATAGCTAAACTTGTCTGAGAGTCTCCTCACAGATTGATGGAGAGCC TTACTGGTATTATGAATACCTTGTTCGCAAATCACCTACAAATCTCGTAAGTATTTCCTTCTGGTCCATTTTCTTTTATA GAAAGATGTGATGTATGTGATGTATGTGTGACGTGATGGTTAGTCTTGATTTATAACTCGCAATTGTACAGGCCGGAGAA CCGAACATTTTCAGGCATTATCTTGCTTCAACAGCTGAAAGAGATGGTATGTCCTCTTCTTTATACTACTTCTGCATTCC AAACTTTCATATATAGATTATCTCTACCTTTGCACTTCTGATATGATTGTCCTCAGCATATTCATACAAATTGCCTGAAA GCTCCTGTTGGAAATGATTGTTTTTCCTTCTTTCATTCAATGAGTGACATGATTTGTTTCAGGCATAAAAGGAAAAATCC AAAGAAAAGAAAGAATGTTTATATTTTTTAGAGGTCATCTATGTCCTAATTCGCACATCATGATTTCCTGCATGCTACTT CAGAGATTTTCAAGTTATTTCTTTTTGGTGTCTTGTTTTAGAAATTCTCATCTGCTATTACTAAACGCTTGATTGCAGGT TATTTGTACTCTGTCAGTGTTTCAGCCCTCAGCCCACAGTGGAAAACAGTACTCTCTCTCTCTCTCTCATGGTGTCTGCA TGTGTGCTTATTTAAATGATTATATATGAACCAGTAAAATCTGCGTTAACTGTATGTTTGGAAATCCTTATATAATTGAT TCTAAAGACAAAATCAATTATGGGGAGAAGCTTCTGTGAGCAGCTTTTCAGTTCCAGAATTGATTATGAGGAAAGATAAA TTGATTCAAATATGCTATAACATATAGATAGTGAAAGGAATTCTAAATATCTAACACATCCTCCGCCAAATGCCAATGAT CAAACATGTCTGGCTGTTTAAGTTGACTGAGGGCATGTCATAGTGGTTCTTTTTATGAATTTTAGAAATGCATAAAAGAG GAAAATCATTCATCAAGGGGGTTGAAGAACCTGAAAATTAGTAGCAAAGTGAACTTTTATGTTTACTGTTTCAGAAACCA GAAATGATAATTGATATGTTTAAATTAGACATAAAAAAGAAATAGTTTTTCATTACTTACAACACACTATGTAAAATCAG TTGATCTAATCGTTTTCATGATCTTTTGGTCTGGCTTTAACTCTGTTACATTATATGTGCAGATGGGACCTTACCTGGAA AAAACAGTGAGCTCGTTCCGTCTTATCAGCCCAACAGAAAACTATGTTCCTCCATACAAAGATCCTTGGAGATTTTGGTG AAAACTCATTTTTTGTTATAATGTATTCATGTAATATTTTTCTGGGTAAAATTTATGTAAACATTTACTCTTCGTTTGGC AATGGAAAGGAAGAGAATAGAGAGAAGAAAATGAGATAATTTTATTTTTGTTTGAATAGAGAGAAAAAGAATTAAAACTT CTTTCTTTTCTTATTTTGTTAATTAAAAATGAAAAGGATGTATATTTAAAATGAAAAAGTACCTCTATTCATATGATGCT GCTTGATTGCTCAT
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0389800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCCAATGGTTTCAGTTTCACACTCTCTCACTCCTTCATTCTCTTCCTTCTTCCCCAATCCTAACAACAACCTTATCTT CAGAAACAACACCAGGGCAATCCTTAACCAAAACAAATGCTCATCATCAGAGGAAAACTCAAACTTTTCAAGCTCTTCTA AAAAACCCACTTCGCAAAATTGGATTTTGAGAAGGGATTTGATGGTTTCAGCTCTTACTTCTGTTTCTCTGACTTCTGGT CTCTTGCAGTCTCCGGTGACTCTTGCTGAAGAAGAGCCTAACATGGCTACATTTGTAGATGAAACAAATGCCTATTCTTA TATGTACCCTCTTGAGGTTCCTTCTAAGAAATTTGTGTTCAAATGGGTAGAATCGCGAAAGCCAGAACGATATTCATCAG CTGCACCACTTTCTCCTAATGCACGGTTGCGCATTGTGTCCGAGCGTGTTGATATCATTGATAATGTCCTCATTTCTGTC ACGATAGGTCCTCCAAATCCGGGCCTTGTAAAATTGAACGACAAGAAGAAATGGACTGCAAAAGATGTTGCTGATTCAGT TTTAGCTGACAAATCTACACTGCGAGTTACGTCAAGTCAGCGCCTAAGTGAGAGTTCAGTTCTTGATACACATACTGGTG AAATTGATGGAGAGCCTTACTGGTATTATGAATACCTTGTTCGCAAATCACCTACAAATCTCGCCGGAGAACCGAACATT TTCAGGCATTATCTTGCTTCAACAGCTGAAAGAGATGGTTATTTGTACTCTGTCAGTGTTTCAGCCCTCAGCCCACAGTG GAAAACAATGGGACCTTACCTGGAAAAAACAGTGAGCTCGTTCCGTCTTATCAGCCCAACAGAAAACTATGTTCCTCCAT ACAAAGATCCTTGGAGATTTTGGTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0389800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MPMVSVSHSLTPSFSSFFPNPNNNLIFRNNTRAILNQNKCSSSEENSNFSSSSKKPTSQNWILRRDLMVSALTSVSLTSG LLQSPVTLAEEEPNMATFVDETNAYSYMYPLEVPSKKFVFKWVESRKPERYSSAAPLSPNARLRIVSERVDIIDNVLISV TIGPPNPGLVKLNDKKKWTAKDVADSVLADKSTLRVTSSQRLSESSVLDTHTGEIDGEPYWYYEYLVRKSPTNLAGEPNI FRHYLASTAERDGYLYSVSVSALSPQWKTMGPYLEKTVSSFRLISPTENYVPPYKDPWRFW
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31407
21 301 281 2.9E-129 –
PANTHER
PTHR31407:SF7
21 301 281 2.9E-129 –
Gene3D
G3DSA:3.40.1000.10
89 284 196 3.7E-9
IPR016123
Pfam
PF01789
95 282 188 7.8E-11
IPR002683
SUPERFAMILY
SSF55724
96 283 188 1.99E-28
IPR016123

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005509
Molecular function Calcium ion binding Interacting selectively and non-covalently with calcium ions (Ca2+).
Subterm of
GO:0009523
Cellular component Photosystem II A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center.
Subterm of
GO:0009654
Cellular component Photosystem II oxygen evolving complex A complex, composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins, that catalyzes the splitting of water to O2 and 4 H+. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ).
Subterm of
Part of
GO:0015979
Biological process Photosynthesis The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
Subterm of
GO:0019898
Cellular component Extrinsic component of membrane The component of a membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0389800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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