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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0390200 |
| Transcript ID | LotjaGi1g1v0390200.6 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Syntaxin, putative; TAIR: AT3G24350.1 syntaxin of plants 32; Swiss-Prot: sp|Q9LK09|SYP32_ARATH Syntaxin-32; TrEMBL-Plants: tr|I1K912|I1K912_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0390200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:87355049..87357412) extracted from Lotus japonicus Gifu genome v1.2.
ATGCACGTCAAATCGGCGCAGTCATCGTATCGGGATCGGACGCACGAATTCCACAGCATCACAGAGAGGTTGAAGAAATC AGGATCTGGACCCAATGGACCTGCCACCACCACCACCACCTCATCCAGATCGGAGGAACCCCGTTCTGCCATTGCTATGC AATCAGAATTCAACAAAAGAGCCTCCAAAATCGGTTACGGCATTCACCAAACCTCTCAGAAGCTCGCCAAGCTCGCAAAA TGTAACCAATTCCATTGATTCACTCACTATTTCTCAACACTGACTATTCAATGCTAGTTTATGTGATTGTTTTAGAACTA TGCAAATGCAATCAATAGCTTTAGCTTTCTATTTGTTATGGTTTGCAGTGGCGAAAAGGACTTCGGTTTTCGATGACCCT ACCATGGAAATCCAAGAGCTTACTAGTGTTATTAAGCAGGATATTACTGCGCTAAACTCCGCGGTTGTTGATCTTCAGTT ACTCAGCAATTCTAGGAATGAGAGTGGAAATGCTTCTGCCGACACGACTAGTCATTCCACCACGGTTGTAGATGACCTCA AGACGCGGTTGATGGGTGCCACGAAGGAGTTTAAAGATGTTCTCACCATGAGAACTGAGGTAATGATAATGTACTGTATT GGTGTGTTTTTTGTGTGGATGTTTTGCACCTTCATGTCTGAGGCTGATGATGATGTTGTGTTGTTGTGTTTTGTGAAGAA CATGAAAGTACACGAGAGTAGGAGACAATTGTTTTCGGCCTCTGCCTCGAAAGATTCTGCTAACCCTTTTGTCCGTCAGC GACCTTTAGCTACGAGGTCCGCTGCTAGTTCTTCTGATGCCCCTGCACCTCCATGGGCTAGTGGTTCGCAATCTTCATCC CAGTTGTTTCCTAAGTAAGTTGTGTTGTTCTATCTTTGTTCTTTTGTTGATTCGTTGTAGGCTCTAGTTAAGCACCGCTT TGTTGTTTTCCTGCTGATTTTTTATGCAATGCAGGTAAACTAATTTATTAGATAATCTGCATTACTGCTTCTTCATCGCT TAATTTGTAGTAGTATGCCATTAGACTATTGAGGTGCATAATTTTTATTCAAAGGAACTGGCGATTCTAGTGAAGATTGA TCTATTCATATTGAGCAAAAGCGTAGCTACATACCCTTGTTTTATTTGACTTCCTCAAATTGTCATTTGAAGTATAATAG AACTCAAATTTGCTGCTTTTTGGCACAAGTGCACCACCATTGGGTCCATATTTATTAATTTCAGTTTGGAAAGTATGTCT TTACTCCCTCCTTTGTGATTGCATTTGTTAGATAGAGTATATAGATAAAAATAGATAATATGCATCGAGTTGTAATGAGT GATCAGTACTGAGCAGTCTGAGCTATGGAACTGTTAAGTTAGAGTTACTTAGGTATTGGTTAGAATTCTGTTAGAGAAGT TACTTTATAACTGCAGTTTGCAACAAGCCTGGTTAGGCTTTATGTCCACTCATATATTGTAGAATCATTCAGATATGAAA TTATCACTTCAGAAACAGTTTTTCTCTATCTTTTCACTTCTATGAACTCTAACAGCATTGAACAGACATAAGTTCGTAAC CTTTGCTTTACTGTATTAATTAATTAAATCACTTAAATTAATTTATGGATTTCATTTGCTTGTTTGCTTACAACTAGGCC TGTCAAACAGGGTGTCTCGTCAAACCTTGTTTTGTTGCCCTAGCCTGGACTGAGAAAACTGTAGGACTAGTAAACTTGGC CCGGCCTAGGGAAATTGGCTGGTCAAACAGGATAGCCCAAAATGCATGTAGAAAAGCAGGAAGGCTCATTCAAAATGTCA GACCATTTTCCTTTATTGGGATGACTTGGCCTGACAAAGAGGATTGGAATTGAAATGGCAGGTCTTCCTAAAAAAATTGT GCATCTGGGACCAAATTAAGAGCTCTAGTTACAAGCATGACTTGTGGATCCTTTCCTATTTAATAATGAAAACTTTTGCT ATGCTTAATATTTTAAGGTTGTTTCAGGTTGGATTAAATTCTTTCTGGAACTATGGCTCCAGACATTTTTTTTTTTGATT TAAAACTTTCATGGCTTTAAATCTACAGGAAGCAAGTGGATGGGGAGAGTCAACCATTGTTGCAACAGCAGCAACAACAA CAGCAACAGCAGCAACAGATAGTTCCTTTACAAGACAGTTACATGCAAAGCAGAGCAGAAGCACTTCAGAATGTTGAGTC CACTATTCATGAGCTCAGCAACATTTTTAATCAACTAGCAACACTTGTTTCCCAACAAGGAGAGGTTGCCATCAGGTATT TATATGTCGAACTCATGTTGCTATACAAACCTCTAACAACCTAG
CDS sequence (LotjaGi1g1v0390200.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCACGTCAAATCGGCGCAGTCATCGTATCGGGATCGGACGCACGAATTCCACAGCATCACAGAGAGGTTGAAGAAATC AGGATCTGGACCCAATGGACCTGCCACCACCACCACCACCTCATCCAGATCGGAGGAACCCCGTTCTGCCATTGCTATGC AATCAGAATTCAACAAAAGAGCCTCCAAAATCGGTTACGGCATTCACCAAACCTCTCAGAAGCTCGCCAAGCTCGCAAAA TTGGCGAAAAGGACTTCGGTTTTCGATGACCCTACCATGGAAATCCAAGAGCTTACTAGTGTTATTAAGCAGGATATTAC TGCGCTAAACTCCGCGGTTGTTGATCTTCAGTTACTCAGCAATTCTAGGAATGAGAGTGGAAATGCTTCTGCCGACACGA CTAGTCATTCCACCACGGTTGTAGATGACCTCAAGACGCGGTTGATGGGTGCCACGAAGGAGTTTAAAGATGTTCTCACC ATGAGAACTGAGAACATGAAAGTACACGAGAGTAGGAGACAATTGTTTTCGGCCTCTGCCTCGAAAGATTCTGCTAACCC TTTTGTCCGTCAGCGACCTTTAGCTACGAGGTCCGCTGCTAGTTCTTCTGATGCCCCTGCACCTCCATGGGCTAGTGGTT CGCAATCTTCATCCCAGTTGTTTCCTAAGAAGCAAGTGGATGGGGAGAGTCAACCATTGTTGCAACAGCAGCAACAACAA CAGCAACAGCAGCAACAGATAGTTCCTTTACAAGACAGTTACATGCAAAGCAGAGCAGAAGCACTTCAGAATGTTGAGTC CACTATTCATGAGCTCAGCAACATTTTTAATCAACTAGCAACACTTGTTTCCCAACAAGGAGAGGTTGCCATCAGGTATT TATATGTCGAACTCATGTTGCTATACAAACCTCTAACAACCTAG
Protein sequence (LotjaGi1g1v0390200.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHVKSAQSSYRDRTHEFHSITERLKKSGSGPNGPATTTTTSSRSEEPRSAIAMQSEFNKRASKIGYGIHQTSQKLAKLAK LAKRTSVFDDPTMEIQELTSVIKQDITALNSAVVDLQLLSNSRNESGNASADTTSHSTTVVDDLKTRLMGATKEFKDVLT MRTENMKVHESRRQLFSASASKDSANPFVRQRPLATRSAASSSDAPAPPWASGSQSSSQLFPKKQVDGESQPLLQQQQQQ QQQQQQIVPLQDSYMQSRAEALQNVESTIHELSNIFNQLATLVSQQGEVAIRYLYVELMLLYKPLTT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 51 | 51 | - | – | |
| MobiDBLite | 1 | 23 | 23 | - | – | |
| PANTHER | 2 | 292 | 291 | 6.8E-133 | – | |
| PANTHER | 2 | 292 | 291 | 6.8E-133 | – | |
| Pfam | 8 | 26 | 19 | 3.6E-4 | ||
| MobiDBLite | 30 | 51 | 22 | - | – | |
| SUPERFAMILY | 54 | 289 | 236 | 1.73E-38 | ||
| MobiDBLite | 169 | 249 | 81 | - | – | |
| MobiDBLite | 172 | 186 | 15 | - | – | |
| MobiDBLite | 195 | 249 | 55 | - | – | |
| ProSiteProfiles | 252 | 289 | 38 | 11.008 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
Expression pattern of LotjaGi1g1v0390200.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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