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LotjaGi1g1v0392400.1

Overview

Field Value
Gene ID LotjaGi1g1v0392400
Transcript ID LotjaGi1g1v0392400.1
Lotus japonicus genome version Gifu v1.2
Description Eukaryotic translation initiation factor 1A; TAIR: AT2G04520.1 Nucleic acid-binding, OB-fold-like protein; Swiss-Prot: sp|P56331|IF1A_ONOVI Eukaryotic translation initiation factor 1A; TrEMBL-Plants: tr|I3SHT8|I3SHT8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0392400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:87694327..87694783) extracted from Lotus japonicus Gifu genome v1.2.

ATGCCGAAGAACAAGGGAAAGGGAGGAAAGAATCGTAAGAGAGGTAAGAACGAAGCCGACGACGAGAAGAGAGAGCTCGT TTTCAAGGAAGACGGCCAGGAGTACGCGCAGGTCCTCCGCATGCTCGGCAACGGCCGCTGTGAAGCCATGTGCATCGACG GCACCAAACGCCTCTGTCACATCCGCGGTAAGATGCACAAGAAGGTCTGGATCGCCGCCGGCGATATCATCCTCGTCGGC CTCCGTGATTATCAGGATGATAAGGCGGATGTGATTCTCAAGTACATGCCGGATGAGGCGAGGCTGCTTAAGGCGTACGG TGAGCTTCCGGAGAATACTCGGTTGAATGAGGGGATTGGTGGTGGTTTGGATGAGGAGGATGAAGCTACTGCTAATGATT ACATTGAGTTTGAGGATGAGGATATTGATAAAATCTAAATCTTTTTTTAAATTATAA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0392400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCCGAAGAACAAGGGAAAGGGAGGAAAGAATCGTAAGAGAGGTAAGAACGAAGCCGACGACGAGAAGAGAGAGCTCGT TTTCAAGGAAGACGGCCAGGAGTACGCGCAGGTCCTCCGCATGCTCGGCAACGGCCGCTGTGAAGCCATGTGCATCGACG GCACCAAACGCCTCTGTCACATCCGCGGTAAGATGCACAAGAAGGTCTGGATCGCCGCCGGCGATATCATCCTCGTCGGC CTCCGTGATTATCAGGATGATAAGGCGGATGTGATTCTCAAGTACATGCCGGATGAGGCGAGGCTGCTTAAGGCGTACGG TGAGCTTCCGGAGAATACTCGGTTGAATGAGGGGATTGGTGGTGGTTTGGATGAGGAGGATGAAGCTACTGCTAATGATT ACATTGAGTTTGAGGATGAGGATATTGATAAAATCTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0392400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVG LRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIGGGLDEEDEATANDYIEFEDEDIDKI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 25 25 - –
PANTHER
PTHR21668:SF9
1 145 145 1.9E-87 –
PANTHER
PTHR21668
1 145 145 1.9E-87
IPR001253
Gene3D
G3DSA:2.40.50.140
2 145 144 1.3E-55 –
SUPERFAMILY
SSF50249
2 144 143 4.0E-46
IPR012340
TIGRFAM
TIGR00523
14 110 97 8.1E-35
IPR001253
Hamap
MF_00216
16 110 95 18.345
IPR001253
ProSiteProfiles
PS50832
22 96 75 31.624
IPR006196
SMART
SM00652
28 110 83 7.0E-49
IPR001253
Pfam
PF01176
32 93 62 2.3E-21
IPR006196
CDD
cd05793
33 109 77 3.39797E-42
IPR001253
ProSitePatterns
PS01262
41 63 23 -
IPR018104

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0003743
Molecular function Translation initiation factor activity Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
Subterm of
GO:0006413
Biological process Translational initiation The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA.
Subterm of
Part of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0392400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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