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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0393900 |
| Transcript ID | LotjaGi1g1v0393900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT5G24870.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q7XTV7|HIP1_ORYSJ Probable E3 ubiquitin-protein ligase HIP1; TrEMBL-Plants: tr|A0A072VCS4|A0A072VCS4_MEDTR Zinc finger (C3HC4-type RING finger) family protein; Found in the gene: LotjaGi1g1v0393900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:87841922..87847065) extracted from Lotus japonicus Gifu genome v1.2.
GGGAGCCGAAGTAACTCAAACTTTTATTCATAAATAAATAAATAAAAATATTTATTACTTTATTATATTAAAAGTTTAAA ACACCTTTGTTGCGTGGATTAAGCTGAAACCTCTTCTTCTCTCTCCCAAACAAAGCTTTTCTCTCTGGTTTTCTCTGCTC TCTCAAGTTTCAAACGAAGAAGAAGAAACCACAACAACTGAAAAAGGTAGCTACGGAATTCAAATTTCTACGCTGAAATC TCAATACACAAATTCAATCTCCACCGCAATTTTTCTTTTCTTTTTCCATGTTGACCTTGGAAAAAAATGGACGATTGAAT TTTTTTTTGAATTTTAATTTTTTTTTCTAAAATAATTAATGGATTTTGGGTCGTTGAAATTGAATTTCATCGATTTTGCG AGGAAATTTGTAGCTCGTTCAATTTTTTTATTTTTTATTTTTTGTGATTTTATTGGGTCTGAGTTGCGTTGAGCTTAATT TCAGCGCTGAAATGGCGGAGACGAAGTCTCTGTGATTGTGTGGAGAAAATTTGATGGAAAGTTCCGTCCTTTAAAAATGG GGCGACCCCCTTCTTTTTCTGGGTTATGGGACCATTCATCTACTCTAGTTTCTTTCTCCTTCACTTAATTATTCTTGTTT CAGTTTAAAACACCTCAATAAATTGTTTGGTTCTTCACAAATGATTGTTTTTTAGGACATGGGTTTCTCTGTTTAGTCAT AAAAAATGTTGCTTTGTACCATGGTTTCTGGCAGCTGGTGTTCATCATCATCTGATCATGTAATAGTTTTTTGTTTTTTG TTTTACTTTCCTTTTTGATTGTTCTGGCTGAAGAATTTTGTTAATAAATTCAAGAGCATCATCTATAGGGATAAGAATAT TATACACCCTTTTGGCTCATAATATAGCTAGTATTGAAAATAACAAGTTATTATGCTATTATGTAGATATTGTTAGACTA TAGTAACTTCTAATTTCATGTATGGAATTTGGTTGTCCACTTGTCCTGCACTAGGAGCTTATAAAGAAATTCAAAGTTGC AGCTCCATCACTTGATAGTAATTATTCTAGTGTCTGGCAAGGCATATATCTTTGTGGATTATGCATGCTGCCCTGGAAAT TTTCTGCATAGTTTGTAACTGGCTGTTTGGTAGATTCAATAACCCAGTTTATGTTGACAGTTGAATGGATGCTTGTTTGC TAGCTGGTTTTCTTGAAATTCTGACCACATGGGATTAGAGTTTTTTTTTCTTTCCGTTTATAGCATGAATTTAACTACTT GAGATTTCAAGTATATGTTTTCCCTCTTGTATGATTTCTTTTTTTTTCTACACCAGAAATACCATTCAAAGTTGGCTGTT TTTCTTGCTGTTGATTTAATACATCTATTTTGATGTAGTTCAAAATTTCTAAGGATATGTTCATCAAGCATGCTATTTAT AATCTAAGTAACTCAACTTGCTCAAGAAATGCCTGATTTTCTTGTGAATAAATTTTCAAATGATGAAATTGGCATGAGAC TTGTGAATTGACTTATTGGTTCATTTTTGCAACGTTTTCCTTTGGTTAAATTTTCTTGTCAAAGGAATTTCTAAATACTT ACTGAGAAAGGCTGCTTTGCCTCCCAAACACACAGCATGAGCATGTTAACAATGATTATTGTCTTATGGCCCCTGTATTA TCTTATAATGCTGAATTCTTTTTTTTTTTTGTTCTCTTCAGATTAATTCCAGCAATTGTATATGATTGCTTTAAGTCAAA TTCATCTGAAGCTCCTCTGTAAGAGAATTCGAACAGTGAATTTTTTTGGGATAACTTCAATCATTATGAAAATACAAATA TATTTTATCTTTATTTCCCTTCAATGCATAAAATTAATTACTGAAGGTTATTGAGAAAATAATTCTATGAGGAAATTTAG CTATGGCATGTAACAAGTTTGTAGCAGTTTTGGGATATCATATTGCAGTTGGATTATTCTCTGATTTCTAGATGGTAAAA ATGTCTGGCTAGTCTTTGTATTGCAGCTTGAGTTCTGTATATAAGACATTGCAATGTAGAAACATGTAAAATTGTTGTCT TAAACTATATATACTATGCTTTTGACAATCATGTAGCTTGTATGAGTTTTTGATCTTCTTATACATCATATGCCAATGTG TTACAGATTTGAAGGGAATACGCTATTGATGGATGAATATTCTGGTAAAAGAGCCATTAGTGGAATGGTAGTCCCTAAAA AGGGGATGGGCCACATGTTTAGAGATAGTGCTAATACTAGAGATCAAAATGGTCAAGTATGCAGCCGCGTTGGTTGCAGC AGCGGAGTCAACTCTCCTAAAGGTACTCGAATTGGTTCTTTTGAAAAGGGAAAATCTTTGAGGCCTTCAATGCGATCTTC CAATGGAAAGGAAGCAATTGGAAGCTCTTCTCGAACTTCTTCTGGGACAAGTAACACAGGAAAACCTGTTAAGAAGGCTC AGAAAACACTATCATCTCAGTTAGAGACAGATTCATCTGAAACCAGTAGCGTACAAGATGAACCAGAAGTTTCAAAGCCT GTCCCTCCACCTGAAAAGGTTCAGAGAGGGCTTCATGGTGAAGTAGAAAACTCAGAGTCTGGTAATGTCACGCGGACCGA AGGAGGGAGCTCTAGTTTAGTATCTAATACAAGATCGCGGAGGAAGCCTGCCCTACGAGGTCAAGAAATTCAAAGCACTG GTCCAGGGACACGTGCTGGCACTAGTAGGTACGGGTTAAGGAACCTCAGATGCAACTCTATTTCTGATGTCATCCCTGCT GGTTGTTCACCATCAGATTCCACCCTTAACAGACGGAAAGATATGATAAAAAAGAGAAATTGTGAAGGGGAAAGTAGTTC CGCTGCCAAAGGGAAGAAGATAAGTGGTTCCTTAGTAGAAGGACGGCATTCTGGTTCCAGAAACGGTATATATATCTCTG ATTCAAGAATATCTAGAGATGCTCCTCACAGGGATAGGCCAGACAGCAACTCGCCATCTGTTAGAACACGTAGATCAATC GGTGGTCATGCCAGGGGAAGGCTTGCTAGCCAAAATGCTATTCCAGTGGAACCCAATCAGTCCCTTCTCATGATACCTTC TTTTCCACATTCTGGTCATCTTAATGCTCCTAATGGATCACATCATACTACTCTGGAGACTCTATCAAGTTCAAGCTCTA ACAGTAGAACCGGTACTAGCAGTGAGGAGTTATATGGTCTTATGCCTGTGTCTCCTAGAGAATATGGCATCACTCATTCT CTAATAAATCGGGATAGTTTTCGACGACGTTATAACATGGATGGTATTGCAGAGGTAATTTTCATTGTAAACAGGAGAAT TACATTTTTCTTATCTGTAATGTGACAATTGACATTTTACAACTAAATAACTGTTTCCTAAATTGCATTTAGGTATTGTT GGCACTTGAGAGGATTGAACAAGATGTTGAGCTAACACATGAGGTAAGTCCGGATTTAAATTTTCTCTGTCTTGTTATGT CAGTTATTTGTATTTGATGCTTTCATTTTGTGTCTTCACAGCAAATTCTTTTATTGGAGTCCAACTTGTTCCTTTCTGGA CTAAACTTCTATGATCAGCACAGAGACATGCGATTGGACATTGATAACATGTCATATGAGGTTTGTTAACATCATAAGGT GCCACTATTCATTTTGTTATATTTGTGCACTTCATTTCCCATTTTTTTTTCTTATAATATGTGCTGTGGTTTGAAGATTA TGTTAAAAGTTACAACCTGTTTGGGTAAAAATATTTTCAAGAATGCAAGTTATTAAAGTAACATTAAGGATTATAACCTA ATTGTAAGTGTTGTTTATTGGCAATACGTTTACATCCTTAACTTCAGGTAGAGTTTTAAAATTTAGCTAGGTTGGGGGAG ATAGCCTTAAGTAAGGACCATGATCCTTGATATTGAATGCAGTTATTTTGAGTTTTTTTTCCTATCCTTACCTCCTAAAT TTTCTATGAATGACAGGAACTGCTGGCTCTGGAAGAAAGAATGGGCACTGTGAGCACAGCTGTAACAGAGGAAGCTCTAT CAGAATGCCTTAAGAAAAATCCGTATCAACCCTCAGCCTCAGACAATGTGACTTGCAATGAGAATAAGGATGATATCAAA TGCAGCATCTGCCAGGTATTTTTTCTTAATTCACATATTAACTAATATTTTTGCATCATCTTACTTTTTTCATAATAGCC AGGTGTATATCAGCTTCTCTTTCCTTAGCATCAATTCTGAAACGCAGAGGCTATATTCTCCTCTGAATTGATTGTGACTT TAGAATCAATTATAAAAGGATTTTCAAACATGCACATCATTGATCAAAGGCTTATTGTTACAAGATATGATTTTGATAAG TTGACTTTATCTGTAGGAGGAATATGTGGCTGCAGATGAAGTGGGGAGTCTGAAATGTGAGCACAAGTATCATGTGGTTT GCATACAGCAGTGGCTACGGCTGAAGAACTGGTGCCCTATTTGCAAAGCACCAGTGGCGTCCTCTAGTCCTTCATCATCT TCCCAGTAATTACATCGTTTAGGTCATAGGAGGGAGGCTGATTTCTTATTAACCCCCTCTTTCTGTTAAGTTTTCTTGTC ATTTTGTACAAAATACAGTTGCTTCTCACCTCTTCTTATTGGTCATTTTGTACATAGCCAATATCTTCATCCACATTATC AAATAATACAAGCCACTGGCTTGATAGACTTGAAATTTCTTTTTCAGAGTGCAATAGTCACATTTAATGTCCTTGCTACT TGCTCTTTGCATTAACCCATTTTTCTTTTTCAATATAAGAAGCTCTAAGGATTTGAAAGGAAGACTTTAAGGTGGGGCAT GCAAGTTTTCCTTTTTCTTCCACGTTGATAATGATAGTACAAGGTGTTTGGCAACTCTTGTTTTGTTTTGTTTTTGGTAA AGAGTTCGGCAACTTTTCAAAACCAGATATTTAGGAATTATGTGGCTGGGCTTTAGACTTAGGTTGTTTAGTTACCACCT AAATAACAAAATCTCTAAAATCTAATTCTTGTCCTAACTTGAATTGAGAGTAAACTACTTCTTAAAACATCATTCCAAAT TTTTAGTTATCACCAAGAAGGTAC
CDS sequence (LotjaGi1g1v0393900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGAATATTCTGGTAAAAGAGCCATTAGTGGAATGGTAGTCCCTAAAAAGGGGATGGGCCACATGTTTAGAGATAG TGCTAATACTAGAGATCAAAATGGTCAAGTATGCAGCCGCGTTGGTTGCAGCAGCGGAGTCAACTCTCCTAAAGGTACTC GAATTGGTTCTTTTGAAAAGGGAAAATCTTTGAGGCCTTCAATGCGATCTTCCAATGGAAAGGAAGCAATTGGAAGCTCT TCTCGAACTTCTTCTGGGACAAGTAACACAGGAAAACCTGTTAAGAAGGCTCAGAAAACACTATCATCTCAGTTAGAGAC AGATTCATCTGAAACCAGTAGCGTACAAGATGAACCAGAAGTTTCAAAGCCTGTCCCTCCACCTGAAAAGGTTCAGAGAG GGCTTCATGGTGAAGTAGAAAACTCAGAGTCTGGTAATGTCACGCGGACCGAAGGAGGGAGCTCTAGTTTAGTATCTAAT ACAAGATCGCGGAGGAAGCCTGCCCTACGAGGTCAAGAAATTCAAAGCACTGGTCCAGGGACACGTGCTGGCACTAGTAG GTACGGGTTAAGGAACCTCAGATGCAACTCTATTTCTGATGTCATCCCTGCTGGTTGTTCACCATCAGATTCCACCCTTA ACAGACGGAAAGATATGATAAAAAAGAGAAATTGTGAAGGGGAAAGTAGTTCCGCTGCCAAAGGGAAGAAGATAAGTGGT TCCTTAGTAGAAGGACGGCATTCTGGTTCCAGAAACGGTATATATATCTCTGATTCAAGAATATCTAGAGATGCTCCTCA CAGGGATAGGCCAGACAGCAACTCGCCATCTGTTAGAACACGTAGATCAATCGGTGGTCATGCCAGGGGAAGGCTTGCTA GCCAAAATGCTATTCCAGTGGAACCCAATCAGTCCCTTCTCATGATACCTTCTTTTCCACATTCTGGTCATCTTAATGCT CCTAATGGATCACATCATACTACTCTGGAGACTCTATCAAGTTCAAGCTCTAACAGTAGAACCGGTACTAGCAGTGAGGA GTTATATGGTCTTATGCCTGTGTCTCCTAGAGAATATGGCATCACTCATTCTCTAATAAATCGGGATAGTTTTCGACGAC GTTATAACATGGATGGTATTGCAGAGGTATTGTTGGCACTTGAGAGGATTGAACAAGATGTTGAGCTAACACATGAGCAA ATTCTTTTATTGGAGTCCAACTTGTTCCTTTCTGGACTAAACTTCTATGATCAGCACAGAGACATGCGATTGGACATTGA TAACATGTCATATGAGGAACTGCTGGCTCTGGAAGAAAGAATGGGCACTGTGAGCACAGCTGTAACAGAGGAAGCTCTAT CAGAATGCCTTAAGAAAAATCCGTATCAACCCTCAGCCTCAGACAATGTGACTTGCAATGAGAATAAGGATGATATCAAA TGCAGCATCTGCCAGGAGGAATATGTGGCTGCAGATGAAGTGGGGAGTCTGAAATGTGAGCACAAGTATCATGTGGTTTG CATACAGCAGTGGCTACGGCTGAAGAACTGGTGCCCTATTTGCAAAGCACCAGTGGCGTCCTCTAGTCCTTCATCATCTT CCCAGTAA
Protein sequence (LotjaGi1g1v0393900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDEYSGKRAISGMVVPKKGMGHMFRDSANTRDQNGQVCSRVGCSSGVNSPKGTRIGSFEKGKSLRPSMRSSNGKEAIGSS SRTSSGTSNTGKPVKKAQKTLSSQLETDSSETSSVQDEPEVSKPVPPPEKVQRGLHGEVENSESGNVTRTEGGSSSLVSN TRSRRKPALRGQEIQSTGPGTRAGTSRYGLRNLRCNSISDVIPAGCSPSDSTLNRRKDMIKKRNCEGESSSAAKGKKISG SLVEGRHSGSRNGIYISDSRISRDAPHRDRPDSNSPSVRTRRSIGGHARGRLASQNAIPVEPNQSLLMIPSFPHSGHLNA PNGSHHTTLETLSSSSSNSRTGTSSEELYGLMPVSPREYGITHSLINRDSFRRRYNMDGIAEVLLALERIEQDVELTHEQ ILLLESNLFLSGLNFYDQHRDMRLDIDNMSYEELLALEERMGTVSTAVTEEALSECLKKNPYQPSASDNVTCNENKDDIK CSICQEEYVAADEVGSLKCEHKYHVVCIQQWLRLKNWCPICKAPVASSSPSSSSQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 532 | 532 | 1.1E-142 | – | |
| PANTHER | 1 | 532 | 532 | 1.1E-142 | – | |
| MobiDBLite | 19 | 188 | 170 | - | – | |
| MobiDBLite | 27 | 52 | 26 | - | – | |
| MobiDBLite | 64 | 119 | 56 | - | – | |
| MobiDBLite | 139 | 165 | 27 | - | – | |
| MobiDBLite | 222 | 298 | 77 | - | – | |
| MobiDBLite | 261 | 276 | 16 | - | – | |
| MobiDBLite | 318 | 346 | 29 | - | – | |
| Coils | 387 | 407 | 21 | - | – | |
| Gene3D | 465 | 534 | 70 | 4.9E-16 | ||
| SUPERFAMILY | 475 | 527 | 53 | 9.42E-18 | – | |
| SMART | 477 | 530 | 54 | 0.0094 | – | |
| Pfam | 480 | 522 | 43 | 8.8E-11 | ||
| ProSiteProfiles | 481 | 522 | 42 | 11.53 | ||
| SMART | 481 | 521 | 41 | 1.6E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0393900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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