Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi1g1v0394500.1

Overview

Field Value
Gene ID LotjaGi1g1v0394500
Transcript ID LotjaGi1g1v0394500.1
Lotus japonicus genome version Gifu v1.2
Description Disease resistance protein; TAIR: AT3G14470.1 NB-ARC domain-containing disease resistance protein; Swiss-Prot: sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4; TrEMBL-Plants: tr|A0A072U9P8|A0A072U9P8_MEDTR NB-ARC domain disease resistance protein; Found in the gene: LotjaGi1g1v0394500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:87909050..87912158) extracted from Lotus japonicus Gifu genome v1.2.

AGATACTTAATTGTTCTCGACGACGTGTGGAATGAAGACCAAGGAAAGTGGGATAAGTTCAAATATTTTATACAGTGTGA AAATGGACCAAAAGGTTCAGCCCTAATGGTAACTACAAGGCTCGACTCTGTAGCATCCATGACAGGAACATATCCTGCCC ATCATCTGTTAGGCTTATCTGACAATGACATCTGGTCATTGTTCAAACAACATGCGTTTGGGCCCGGCAAGGAAGAGCGT GCAGAGCTTCTGGCCATAGGCAAGGACATAGTGAGGAAATGTGTGGGCTCACCTCTTGCTGCCAAAGCACTAGGAAGCAT TTTGCGCTTTAAAAATGAGGAATATCAATGGCTTGCAGTAAAGGAAAGTAAGATCTGGAATTTACCAGAGGATAATCCCA TTATGAAAGCTTTGCTTCTAAGCTATTTCAATTTGAAATTATCATTAAGGCCGTGTTTTTCTTTTTGTGCCACTTTCCCT AAAGATTCTGTGATGGTAAAGGAAGAACTGATTCATCTTTGGATGGCTAATGGATTTATCTCATCCACAGGAAGTTTGGA GGTGGAATATGTTGGCAATGAGGTGTGGAATGAATTATACCAACGATCATTTTTTCAAGAAGTAAAGACCAATAAATATG GTAAGATTACATTCCAGATGCATGATTTGGTCCATGACCTTGCTCAGTCAATTATGGGGGAAGAATGTGTGGTTTCAGGG TTTGCAAGCTTCACTAATTTGTCGAGTAGAGTTCACCATATAGGTTGCACATCTGTTAATAAACAGGTCAATTACAACAT GATTCCCTTCAAGAAAGTTGAATCCTTGCGAACCTTTCTTGAGTCTGATCCACACGGCCTAAATTTAGGTGCGCTGCCGT CTATTAGTCCTCTCCGTGCATTACGCACAGCTTCTTTTCGACTCTCAAAACTCAAGAATTTTATACATTTGAGGTACTTG GAACTTTGCAGAAGTTGCATCATTACCTTGCCAGAGCCTGTTTTTGAGCTGCATAAATTGCAAACACTGAAACTAGAACG CTGTTATTATCTTTCTAGTATCCCCCAACATTTGACACAATTACAAGATCTCAGACATCTTGTGATTAAAGACTGTAAGG CATTAACATCAATGCCCTCCCAAATTGGGAACCTAACTTGTCTAAAAACTTTGAGCATTTTCATTGTGGGTTCGAAGGCA AGGAGTGGCTTAGCAGAGTTACATGACTTACAGCTGGGAGGCAAGCTACATATTAGAGGCCTTGAGAATGCGCCTAGTGA ATGGGATGCCAGGCAAGCTAATTTGGCAGGTAAGAAGGACTTGAATCGCTTATACTTGACATGGGGCATACATGGTAATT CACAAGGTAATGGTGCTAATGCTGCTGAGTGCATACTTGAAGCCCTTAAGCCTCACTCAGGTCTCGAGAGTTTTGGGATG AAGGGTTATGGGGGAACACAACTTCCCCAGTGGATGGGAAATAATTCTCTTCTAAGAGGCTTAGTTGATCTTATACTCTA TGATTGCAAGAACTGCCAGCGGCTTCCTCTACTTGGTAAATTACCATGTTTGGCAACACTTTTCATATCTGGAATGAAAG ATGTAAAGTACATTGATCATGACTTGTATGATCCTACGGCAGAGAAGGCTTTTGTGTCTTTGAAAAGGTTAACTTTGCGT GGTTTACCAAACTTAGAGAGAATATTGGAAGCTGAAGCTGAAGGATTAGATATACTACCACTACTTTCTGATTTAAGTAT TTCAGGTGTCCCGAAGCTGGCACTGCCATCCCTTCCATCTGTTCGCTCCATTGTTGCCCATGGCAGTGATGAAAATGCGG CTTTCTTACCAGGTGAAGTTTTGCGCAGCATGCGTGGTTTAAAGACGCTTGGAATCAAAGGGTTCAACAAACTGAAGGTG TTATCTGATGAACTCGGCAGTCTTGGTGAACTAGAGCATCTTGACATTTCATATTGTGCTGAACTTGAGTCTTTCCCTGA CCATGTGATGCGAGGTATGAGTTCTCTTCGATCATTATTAATTTTGGGCTGCCCAAAATTCAAGTCATTTTCTGAAGGCA TGGGTTACCTTACTTGTCTTGAGAGTCTTCAAATCATCGACTGCCCCCCACAGCTTGTGTTACCAAGTAATATGAACCAG CTAACTGCACTACGAAAAGTGAGAATCCTGGGCAAGGAAAAAAACAGCAGGTTACCAGAGGGCCTAGAACGTATTCCCTC CCTGCAAATTTTGGGGCTGTCAGAATTTCCTTCTCTTACTTCATTGCCGGACTGGTTGGGACTCATGACCTGTCTCCAAA AATTGGAAATCAGATTTTTCCCCGAGTTAAGGTCACTACCGGACAGCTTGCAGCAACTCAAAAACTTGCATGAATTAAGT ATTGTTGGATGCCCAAAGCTGGAGAAGCGATTGAAGAAGGGAACAGGGGAAGATTGGCAAAAGATTGCTCACGTTCCTGA TCCTGATATAGTTACTGAACCAACATCTTGTGGTAAGTTCTTAAATCTCCCTCTCTCTCTCTCTCTCTCTCACCTTTTCG TACAGTCCAATTTTGTCTAATTGCAGGAAAGTGTTAAATAAGCTTATCCTTAATAGATTAATATGAGTGTTTTTCGGGAA TTGAGTTTGGTGCCCCACCCCTTAGGCTTTGCACCCCACTTTATTAAATACGGAATTTAAAGTTCCGTATCCGTATCAAT ACGGAAAATAAAATTTCGTATCTGTTTTAGTATATAATGAGTGGTTGAAAATGTGACACGCATGCTTAAATACAGTACAG AATTTTAAGTTCCGTATTCAATAGGGAGAATACGGAATTTTAAATTCCGTATTTGATAAAGTGGGGTGCCAAGCCCCATA GGTGGGGTGTCAAACCCAACTCCCGTGTTTTTCGTATCAAGTTTATGGTGATTTTTTTTTTAATATGGATTATGGAACCA CTCATGCAGACAAAGTCATAAAAGCATGGAGGATGCGAAAGCAATTCTTACACAGTACTAGACACTACTATACTTCAGAG GATGAATTTAACTTAATGGTTGATGTATTCTGAGTGAGTGAAAAGCAGATATATAACAACCCGTCTCCA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0394500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTAACTACAAGGCTCGACTCTGTAGCATCCATGACAGGAACATATCCTGCCCATCATCTGTTAGGCTTATCTGACAA TGACATCTGGTCATTGTTCAAACAACATGCGTTTGGGCCCGGCAAGGAAGAGCGTGCAGAGCTTCTGGCCATAGGCAAGG ACATAGTGAGGAAATGTGTGGGCTCACCTCTTGCTGCCAAAGCACTAGGAAGCATTTTGCGCTTTAAAAATGAGGAATAT CAATGGCTTGCAGTAAAGGAAAGTAAGATCTGGAATTTACCAGAGGATAATCCCATTATGAAAGCTTTGCTTCTAAGCTA TTTCAATTTGAAATTATCATTAAGGCCGTGTTTTTCTTTTTGTGCCACTTTCCCTAAAGATTCTGTGATGGTAAAGGAAG AACTGATTCATCTTTGGATGGCTAATGGATTTATCTCATCCACAGGAAGTTTGGAGGTGGAATATGTTGGCAATGAGGTG TGGAATGAATTATACCAACGATCATTTTTTCAAGAAGTAAAGACCAATAAATATGGTAAGATTACATTCCAGATGCATGA TTTGGTCCATGACCTTGCTCAGTCAATTATGGGGGAAGAATGTGTGGTTTCAGGGTTTGCAAGCTTCACTAATTTGTCGA GTAGAGTTCACCATATAGGTTGCACATCTGTTAATAAACAGGTCAATTACAACATGATTCCCTTCAAGAAAGTTGAATCC TTGCGAACCTTTCTTGAGTCTGATCCACACGGCCTAAATTTAGGTGCGCTGCCGTCTATTAGTCCTCTCCGTGCATTACG CACAGCTTCTTTTCGACTCTCAAAACTCAAGAATTTTATACATTTGAGGTACTTGGAACTTTGCAGAAGTTGCATCATTA CCTTGCCAGAGCCTGTTTTTGAGCTGCATAAATTGCAAACACTGAAACTAGAACGCTGTTATTATCTTTCTAGTATCCCC CAACATTTGACACAATTACAAGATCTCAGACATCTTGTGATTAAAGACTGTAAGGCATTAACATCAATGCCCTCCCAAAT TGGGAACCTAACTTGTCTAAAAACTTTGAGCATTTTCATTGTGGGTTCGAAGGCAAGGAGTGGCTTAGCAGAGTTACATG ACTTACAGCTGGGAGGCAAGCTACATATTAGAGGCCTTGAGAATGCGCCTAGTGAATGGGATGCCAGGCAAGCTAATTTG GCAGGTAAGAAGGACTTGAATCGCTTATACTTGACATGGGGCATACATGGTAATTCACAAGGTAATGGTGCTAATGCTGC TGAGTGCATACTTGAAGCCCTTAAGCCTCACTCAGGTCTCGAGAGTTTTGGGATGAAGGGTTATGGGGGAACACAACTTC CCCAGTGGATGGGAAATAATTCTCTTCTAAGAGGCTTAGTTGATCTTATACTCTATGATTGCAAGAACTGCCAGCGGCTT CCTCTACTTGGTAAATTACCATGTTTGGCAACACTTTTCATATCTGGAATGAAAGATGTAAAGTACATTGATCATGACTT GTATGATCCTACGGCAGAGAAGGCTTTTGTGTCTTTGAAAAGGTTAACTTTGCGTGGTTTACCAAACTTAGAGAGAATAT TGGAAGCTGAAGCTGAAGGATTAGATATACTACCACTACTTTCTGATTTAAGTATTTCAGGTGTCCCGAAGCTGGCACTG CCATCCCTTCCATCTGTTCGCTCCATTGTTGCCCATGGCAGTGATGAAAATGCGGCTTTCTTACCAGGTGAAGTTTTGCG CAGCATGCGTGGTTTAAAGACGCTTGGAATCAAAGGGTTCAACAAACTGAAGGTGTTATCTGATGAACTCGGCAGTCTTG GTGAACTAGAGCATCTTGACATTTCATATTGTGCTGAACTTGAGTCTTTCCCTGACCATGTGATGCGAGGTATGAGTTCT CTTCGATCATTATTAATTTTGGGCTGCCCAAAATTCAAGTCATTTTCTGAAGGCATGGGTTACCTTACTTGTCTTGAGAG TCTTCAAATCATCGACTGCCCCCCACAGCTTGTGTTACCAAGTAATATGAACCAGCTAACTGCACTACGAAAAGTGAGAA TCCTGGGCAAGGAAAAAAACAGCAGGTTACCAGAGGGCCTAGAACGTATTCCCTCCCTGCAAATTTTGGGGCTGTCAGAA TTTCCTTCTCTTACTTCATTGCCGGACTGGTTGGGACTCATGACCTGTCTCCAAAAATTGGAAATCAGATTTTTCCCCGA GTTAAGGTCACTACCGGACAGCTTGCAGCAACTCAAAAACTTGCATGAATTAAGTATTGTTGGATGCCCAAAGCTGGAGA AGCGATTGAAGAAGGGAACAGGGGAAGATTGGCAAAAGATTGCTCACGTTCCTGATCCTGATATAGTTACTGAACCAACA TCTTGTGACAAAGTCATAAAAGCATGGAGGATGCGAAAGCAATTCTTACACAGTACTAGACACTACTATACTTCAGAGGA TGAATTTAACTTAATGGTTGATGTATTCTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0394500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVTTRLDSVASMTGTYPAHHLLGLSDNDIWSLFKQHAFGPGKEERAELLAIGKDIVRKCVGSPLAAKALGSILRFKNEEY QWLAVKESKIWNLPEDNPIMKALLLSYFNLKLSLRPCFSFCATFPKDSVMVKEELIHLWMANGFISSTGSLEVEYVGNEV WNELYQRSFFQEVKTNKYGKITFQMHDLVHDLAQSIMGEECVVSGFASFTNLSSRVHHIGCTSVNKQVNYNMIPFKKVES LRTFLESDPHGLNLGALPSISPLRALRTASFRLSKLKNFIHLRYLELCRSCIITLPEPVFELHKLQTLKLERCYYLSSIP QHLTQLQDLRHLVIKDCKALTSMPSQIGNLTCLKTLSIFIVGSKARSGLAELHDLQLGGKLHIRGLENAPSEWDARQANL AGKKDLNRLYLTWGIHGNSQGNGANAAECILEALKPHSGLESFGMKGYGGTQLPQWMGNNSLLRGLVDLILYDCKNCQRL PLLGKLPCLATLFISGMKDVKYIDHDLYDPTAEKAFVSLKRLTLRGLPNLERILEAEAEGLDILPLLSDLSISGVPKLAL PSLPSVRSIVAHGSDENAAFLPGEVLRSMRGLKTLGIKGFNKLKVLSDELGSLGELEHLDISYCAELESFPDHVMRGMSS LRSLLILGCPKFKSFSEGMGYLTCLESLQIIDCPPQLVLPSNMNQLTALRKVRILGKEKNSRLPEGLERIPSLQILGLSE FPSLTSLPDWLGLMTCLQKLEIRFFPELRSLPDSLQQLKNLHELSIVGCPKLEKRLKKGTGEDWQKIAHVPDPDIVTEPT SCDKVIKAWRMRKQFLHSTRHYYTSEDEFNLMVDVF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Pfam
PF00931
1 87 87 1.5E-11
IPR002182
SUPERFAMILY
SSF52540
1 121 121 1.19E-20
IPR027417
PANTHER
PTHR23155
2 518 517 1.1E-119 –
PANTHER
PTHR23155:SF860
2 518 517 1.1E-119 –
SUPERFAMILY
SSF52058
184 557 374 1.47E-28 –
Gene3D
G3DSA:3.80.10.10
231 558 328 2.9E-27
IPR032675
SUPERFAMILY
SSF52058
547 771 225 1.05E-25 –
Gene3D
G3DSA:3.80.10.10
559 676 118 1.3E-18
IPR032675
Gene3D
G3DSA:3.80.10.10
677 782 106 1.1E-19
IPR032675

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0043531
Molecular function ADP binding Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0394500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…