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LotjaGi1g1v0397200.1

Overview

Field Value
Gene ID LotjaGi1g1v0397200
Transcript ID LotjaGi1g1v0397200.1
Lotus japonicus genome version Gifu v1.2
Description Proteasome subunit beta type; TAIR: AT4G31300.1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein; Swiss-Prot: sp|Q8LD27|PSB6_ARATH Proteasome subunit beta type-6; TrEMBL-Plants: tr|I3SPC4|I3SPC4_LOTJA Proteasome subunit beta type; Found in the gene: LotjaGi1g1v0397200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:88361918..88365673) extracted from Lotus japonicus Gifu genome v1.2.

TGAGGAAAATAAAAACTTATGCGGCAAGTCGTGAAATTAGCTTTTCCTTTCCTTCTTCCCAAGCTAAACTAGGGCATCCA ACTATTTTTCCCCCTTTCTCCTTCTTCTTCTTCGACTAGTTGTTTCTGTTTCACTGTGCAGTTAACTTCAATCATGGATC AGAATTTCGATCTCTCCGCTCCCCATTCCATGGGAACCACCATCATCGGCGTCACCTACAACGGCGGCGTCGTTCTCGGC GCCGACTCTCGTACCAGCACCGGTAACTAACCTCCCTTTCTCTTTCTCACAACACTCTCTACTCTTTCACTCACCGAACT TCAATCAATTTAGGTTTTAACTGCTTCAATCCTTAGGTTAACATTATAATTTGTTTGCTTGAGATTTGATTAGTTCGTTG TTGTGAATTTTGGGAATAACAATTGATCTGTTTTCACTTTCAGGAGTGTATGTTGCTAACCGAGCATCAGACAAAATCAC ACAGCTAACTGACAATGTCTATGTCTGTCGCTCTGGATCGGTATTGCTCTTTCTATCCTAAGGCTATTGCGTTTAGGTCA AATTGTTATGTGGTTCTTTCTGGTGCTTTACTCTTTACCCATATAGTTAGTTAGTTGCTTGAATTTGATTTTCTGATTCT GTTATATTTACATTTGGTGATGTATTTCATGCAATTATGCACTTCACTCCCCATTATGTTGATATTGCATACTCTTTCCC CAAATGTTTGGCTGAATGTATTGGCCAACATAGTGTTTGGCTATTTAATTTTGTTTCTTCTTTTTAGATATCCTCCCTCA CTGTGTTCTAGTATTATAATGCTGCAGCAGATGATAATGGAATCTCTTATGAACTGTTACTGTTTTATGCATAGTAGTCC ATATCGGGATTATGACTTTAATCAGAAAGAGGGGGGGGGGATTAATCTCAAATCGCATAATCATAAGATTTAGCAAATTT CCTATATTTATATGCATATAAATTCATGTATGTAGCATAAATAACAAAAAGAAAAACACTTTCTCGTGTGGTTATGGTAC AAATGTGGAGTGATTATGTTGTGATTGTGCGATTAATCTTATGATTATGCCTCTATTAAGCCTGATAACGATTATAGATT AGATTTAAATTGCCCAGGGCACCATTAATCGCATAATCGTGCTATTAAGTGATTTTAATCGCGATTTTGAATACCATAGT TTTATGTACTGAAAATGCTGATCTGCTTTCTTATTACAGGCTGCAGATTCTCAGGTTGTCTCTGACTATGTGCGCTACTT CCTCCATCAACACACGTAAGTGACTTTGGTTGTGTATATTCTAGTGGGAAATTCTCTTTTGTAAGCTTAAGTTTTAGACT ATGTTTGTGTCTGTTTACATGATTGTTGGTTTTATTTTCGTGTAGGATACAGCTCGGACAACCTGCAACAGTCAAAGTTG CTGCGAACCTTGTCCGACTTCTTTCTTATAACAACAAGGTTCCATTCTAAGGATTTTACTTGTACTTTTTTCGGGTTACT GTCTTCCTACAGCACAGGGGGACGGGGAAGTTACTTTATCACGTGCCTTAATTTTTTTTCCTGAGTATCACATGTGTATT ACTATGATATTCTTCTGTCTTGCTTACATCTAAGCTAAAAGAAAAATTTACAGGTGTATTCACATTGTGTAGCCTGATCT ACTCTTAGTGTTTCTTTATGCTTTTTTTGACATATATTAATCTATTATTACATGGCTTTGTTTTAAATCTACTCTCATTG GCAGAATTTCTTGGAGACCGGGTTAATTGTTGGTGGTTGGGACAAATATGAAGGTGGTCAAATTTTTGGAGTTCCACTTG GTGGAACAATTGTACAACAACCTTTTGCTATTGGAGGTATTTGACTATGAAAACATGTTTACAACTATAAGGCTTTTTCT TGTTAATTATTTTTAGCATCGCTGATCCCTGTATATATTGCTTACCCAGACTACCTTGATATCGATATTTGATTATGGGT AGATCTTTATAGCTCCTTAGAAATTAGAATCACTAATGCAGGGTAACCTTTGAAAAAGTTAATCTAGGTTGTTTATAGAC TTGTAGAAATAAAAGATAGAAGATAAAAAAACCCAAGCAACCCTTAATAGGCCACTCTCCTCTTTTGTTCTGATGTGGTG GGAAAGAAGAAAAGTAATGGAAGATATTATATGAAATTTCTTTATTAATTTTATTATGGAACTTGATAAATTTCTTCCCA CCTCCATATGTATCCTTCTACTGTTTGCTCAGGCTTGTAGAATTGTGTGTGTTTTTTTTTTGTTGGAGGCGGTAGATTTT GAATCTTTGGTGATTTAGTTTTATCACCTTGCTAGTCTTGTATGTCAATTTGGAATAGCTTGGAGCATAGCTTGTTGTGA CTTGCAAACTTTTATATGGCTTTTCTCTTGCTATACATCTTATTCTTCTTAAATCCTTCATTGCTATCCTGTTAACTATT TCCTTTGGATGCCTGATTTTTTGTTTATTAAGCTATGGCTTACGCAAGTTGTCTTCTGCAGGATCTGGTTCCAGTTACTT GTATGGGTTTTTTGACCAGGCCTGGAAAGATGGAATGACCAAGGATGAAGCTGAGGTATGGGTCTTGATTCTTGCCTCTG CCTTCCTAAAGTTAACTAATAATGATCCTAGTGTGCCCAAACAATTGTTATGGTGTTCGTTTATTTGGGACCTTATCTGG TTCTTTTTGTTATTATGCCCACATGGATGATGTCTAAAAATTCAGAAGCTATTATTAGAAACTGAGGATGATTTTTATTT TTGGGTGAGATTGGTGTCTCAATACTTATTGCTGACAGTCTACTTGATGTTGTATGGCAGGACTTGGTGAAAAAGGCTGT TTCACTGGCCATTGCTCGAGATGGTGCAAGTGGTGGGGTGGTCCGAACCGTCATAGTAAGACATCTTGGCACAATAAATT GACCAGGAATTCCTTGTATTAACTGGACATTCACGATAAATTGACACCCCGTGATTTTGAATTCCTTGTAGATAAACTCA GAGGGAGTGACCAGGAACTTCTACCCTGGCGATCAACTTCCATTATGGCATGAGGAGCTGGAGCCTCAAAACTCTTTGCT GGACATTCTCGGTGCCCCAGAGCCTATGAACATATGAGAAGTTGCCATGATTAAGAATCTTGCTCGGCTAGATTATACCT CTATGTTCATCTTGTTTCTGAATTAATCTTATCGGATTTGTCTAATCGGTTATATTGTTTGGTCCGATATTGCTTTCCTG TTATATCCCTGTGATATGTACCATTGATGCCTTTTTTAAGCATATGGTTAAACTGTAAGTTCGTATTTGAACCCTGGGCA GTAGTTGTGCTAAACACTCGCATAGCATGTTTGAGTTCAGTGTTCAGATCTTTTAGAATCAATTATTCTTTCAACGTGAA AATATACCTATGTCCAAACATGCGCGTACTCGATATTAGTGTTTTACTTGGCTCAAGCAGGATTGCATTAAGTGGAAGCT ACGTATGATTAAGCTCACAATCCTAACATTTGGGGATTCATTTCTGTAGCATAAATTCAAAGTGGGTACATGTTTTTTGA AAATTCAAAAGTATCAAGATTTAGTGGTCAGTATTAAGAGTAATGATACTTATACACCTTACTTTCTTTTTCATCTCATT TTCATACATTTTTCTTTTTATCTCTCTATGCACTTCCGGCTAAATCACAAATCATATCACTCATTTATCTTTTTTC
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0397200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATCAGAATTTCGATCTCTCCGCTCCCCATTCCATGGGAACCACCATCATCGGCGTCACCTACAACGGCGGCGTCGT TCTCGGCGCCGACTCTCGTACCAGCACCGGAGTGTATGTTGCTAACCGAGCATCAGACAAAATCACACAGCTAACTGACA ATGTCTATGTCTGTCGCTCTGGATCGGCTGCAGATTCTCAGGTTGTCTCTGACTATGTGCGCTACTTCCTCCATCAACAC ACGATACAGCTCGGACAACCTGCAACAGTCAAAGTTGCTGCGAACCTTGTCCGACTTCTTTCTTATAACAACAAGAATTT CTTGGAGACCGGGTTAATTGTTGGTGGTTGGGACAAATATGAAGGTGGTCAAATTTTTGGAGTTCCACTTGGTGGAACAA TTGTACAACAACCTTTTGCTATTGGAGGATCTGGTTCCAGTTACTTGTATGGGTTTTTTGACCAGGCCTGGAAAGATGGA ATGACCAAGGATGAAGCTGAGGACTTGGTGAAAAAGGCTGTTTCACTGGCCATTGCTCGAGATGGTGCAAGTGGTGGGGT GGTCCGAACCGTCATAATAAACTCAGAGGGAGTGACCAGGAACTTCTACCCTGGCGATCAACTTCCATTATGGCATGAGG AGCTGGAGCCTCAAAACTCTTTGCTGGACATTCTCGGTGCCCCAGAGCCTATGAACATATGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0397200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDQNFDLSAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYVCRSGSAADSQVVSDYVRYFLHQH TIQLGQPATVKVAANLVRLLSYNNKNFLETGLIVGGWDKYEGGQIFGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKDG MTKDEAEDLVKKAVSLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLPLWHEELEPQNSLLDILGAPEPMNI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11599
6 229 224 1.1E-136 –
PANTHER
PTHR11599:SF133
6 229 224 1.1E-136 –
SUPERFAMILY
SSF56235
8 204 197 5.7E-59
IPR029055
Pfam
PF00227
13 193 181 1.0E-45
IPR001353
ProSiteProfiles
PS51476
14 193 180 48.221
IPR023333
CDD
cd03762
15 202 188 6.00025E-120 –
Gene3D
G3DSA:3.60.20.10
15 218 204 6.0E-74
IPR029055
ProSitePatterns
PS00854
18 65 48 -
IPR016050
PRINTS
PR00141
22 37 16 7.9E-20
IPR000243
PRINTS
PR00141
143 154 12 7.9E-20
IPR000243
PRINTS
PR00141
154 165 12 7.9E-20
IPR000243
PRINTS
PR00141
179 190 12 7.9E-20
IPR000243

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004175
Molecular function Endopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
Subterm of
GO:0004298
Molecular function Threonine-type endopeptidase activity Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
Subterm of
GO:0005839
Cellular component Proteasome core complex A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex.
Subterm of
Part of
GO:0051603
Biological process Proteolysis involved in cellular protein catabolic process The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells.
Subterm of
Part of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0397200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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