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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0397700 |
| Transcript ID | LotjaGi1g1v0397700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | plant/protein (Protein of unknown function, DUF599); TAIR: AT4G31330.1 transmembrane protein, putative (Protein of unknown function, DUF599); Swiss-Prot: sp|Q981V0|ARLY2_RHILO Argininosuccinate lyase 2; TrEMBL-Plants: tr|I3SDL3|I3SDL3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0397700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:88423368..88425857) extracted from Lotus japonicus Gifu genome v1.2.
GTTGAACAAGTCCACATTCATTCTTCCTTTTATGTGTATATAAACCAAGGTTGGCATTGCCATATAGGAATATCAAATCC CCACTCATCAAATTGCTAATAACTTTTAGGGTGCAACGTGGAAGTGCAATCACAATATTATATTAGACCTCATCAAAAAA ACGATATCATAGTAGCTTCTAGATCAGCTCCATCAAGCAGAGATGGAATGGAAGAATTGCTATTTGGATGTCATATTGGT GCCTTTAGGTGTTCTAATGACTGGTGGCTACCATTTCTGGGTGTGGTACAATGTGAGAAATCATCCACACACTACAATTA TTGGGATCAATGCTAGTGGTCGAAGGAATTGGGTTGCTACCATGATGAAGGTATATACCTCTGAAATTTAATGCTCAATG TTTGGTTTTGATGCATTAATTCATGTTAATTTTTTAGTTATTAATTGATCAATAATCTTACAAGTTTTATAATCTTTAGA GAACAGCCAGCTAATTATAGCCTTTTTTCGGGCCCAAACTCATGATTATAGTATATCTATATAGTACTTAATTAAGGAAC TTTAACTTTCCATGCCATATAATTGGAGTGATCAGCAACCTGGTGTTGTTTTGTGATAAGCCAAAAAGCACAAGGGGTGC TTATCAACCTGGTGTTGGAATTTTACCTTGTAGCATTTCAGGGGAGGGTAAGAACTATGAAGGGATTAAGGGAATAATGG AGAAATAGAAATTGAGAATAATTTTTTTTTTCTAAATATCATTTTGCAAGTTATACAATGTTCCTTTTCTACTTGTTTTT TCTTAATTGGTCTTGTTTCTAACAGATACATTGTCATTTAATTAATTGCTGACAAACAAAGCAAGAAAGAATGTTCTTGT TCTTTCTTTATGGTATGCGTCAAAAACCACTATAAGATGTTATTCTAGCTAGGCTTATCCTCTTAGATTTGTTTTTCTTT ATGGTACAATTAGCTAGACTATAATCCAAAATGCGTTCTACCTAGACCTACATAATGTGCTTACTTGTGGGATTCTTTGA TTGGTGAAATCACAGTTGGAAATTATTAGCCATTAAATATAATATTAGAATTTGAATAATTATAGTTGAAAATTAATCAT TAATTTAATTACAAATCAATCTTTTAATTATTTTAGGAGTGGTCACATGTAAATATACAACTTTCTGTCAACTTCTGATC TACATACATGTTTAAGGAGGATTGTTAAGCGGTTAAAAATCATCACTAATGTGTTTGTCAATTGAACGTAAACAAAAACG GTATGTTTAGTCATCATTTACATTTTTTAATATTTTATTTCAATTACGACATACGACAGTTAAACGAATCTCTATCTATC TCTTCTTACCACATTACATGCAAATAACATTCATTAGTTTTCTCTTCTTTTCTTACTACGATGTCTCCACCAATTTTGTA TCGTACTCAAATTTTTCTTTTCAAAAATATGCATCATCTCATGTTTCAACAAACATAATCTGCCATATCCCACAATCCTA AAATTTGCACCATATTTTCAAAGTGTTCACTCATTCTTTGTTCCCCACTAGTTAATTTGGTGGTACGCGGAATAGCGACC ATGTGAATATACATGATCTAACTAATAATGCATGACTGATTGGTATAATTTCGGCAGGACAATGAAAAGAAAAATATTCT GGCGGTTCAATCCCTCCGGAACACGATCATGGGCTCGACACTAATGGCCACCACCTCAGTTCTCCTCTGCTCCGGCCTCG CCGCAATCATAAGCAGCACCTACAGCGTCAAGAAGCCGCTCAACGACTCCGTCTACGGCGCTCACGGCGAGTTCATGGAA GCACTCAAATACGTGACTCTGCTCACTGTCTTCCTCTTCTCCTTCTTCTGCCACACACTGTCCATCAGGTTCATCAACCA GGTCAACATTCTCATCAACATTCCACAGGATCCAATGTCATTGGTCACACCAGAATATATCAATGATATTTTGGAGAAAG GTTTCATTCTGAACACTGTTGGGAACAGGCTTTTCTACACTGCACTTCCTCTTTTGCTCTGGATTTTTGGCCCTGTTTTG GTGTTTCTCTGCTCATTGTCTATGGTTCCGGTGCTTTACAATCTTGACTTTGTGGTGCCTAGTGATAAGGGGAAGAAGAA GATGGAGAAGAATGAGAATGGAGATTTTGTATGAATTCAGTGTCATGTGGTAATTATTTATGTGTTTAAGACTTTAAGTA AGAATTTAAGTTGATCTTTTTTATTTCAATCATGTATGCTCTGTTCCGTGTAACAAAGGCTATAGAAGAGATTTAGATTG TGTGATCAATAACGTGGGTTGTTGTGAATACAAAATTATGATATATTTGCTGGATTGCATTTTCCACACCAAGTCGATCA TTAACGACTCTCATTTCTAACCACTCCCAAACAGGGTTTTTGTCTCTTATGCACTTTTTTCCTCCTCTATCCCACTCTTT TTATAAAATC
CDS sequence (LotjaGi1g1v0397700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATGGAAGAATTGCTATTTGGATGTCATATTGGTGCCTTTAGGTGTTCTAATGACTGGTGGCTACCATTTCTGGGT GTGGTACAATGTGAGAAATCATCCACACACTACAATTATTGGGATCAATGCTAGTGGTCGAAGGAATTGGGTTGCTACCA TGATGAAGGACAATGAAAAGAAAAATATTCTGGCGGTTCAATCCCTCCGGAACACGATCATGGGCTCGACACTAATGGCC ACCACCTCAGTTCTCCTCTGCTCCGGCCTCGCCGCAATCATAAGCAGCACCTACAGCGTCAAGAAGCCGCTCAACGACTC CGTCTACGGCGCTCACGGCGAGTTCATGGAAGCACTCAAATACGTGACTCTGCTCACTGTCTTCCTCTTCTCCTTCTTCT GCCACACACTGTCCATCAGGTTCATCAACCAGGTCAACATTCTCATCAACATTCCACAGGATCCAATGTCATTGGTCACA CCAGAATATATCAATGATATTTTGGAGAAAGGTTTCATTCTGAACACTGTTGGGAACAGGCTTTTCTACACTGCACTTCC TCTTTTGCTCTGGATTTTTGGCCCTGTTTTGGTGTTTCTCTGCTCATTGTCTATGGTTCCGGTGCTTTACAATCTTGACT TTGTGGTGCCTAGTGATAAGGGGAAGAAGAAGATGGAGAAGAATGAGAATGGAGATTTTGTATGA
Protein sequence (LotjaGi1g1v0397700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEWKNCYLDVILVPLGVLMTGGYHFWVWYNVRNHPHTTIIGINASGRRNWVATMMKDNEKKNILAVQSLRNTIMGSTLMA TTSVLLCSGLAAIISSTYSVKKPLNDSVYGAHGEFMEALKYVTLLTVFLFSFFCHTLSIRFINQVNILINIPQDPMSLVT PEYINDILEKGFILNTVGNRLFYTALPLLLWIFGPVLVFLCSLSMVPVLYNLDFVVPSDKGKKKMEKNENGDFV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 229 | 229 | 8.0E-124 | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| PANTHER | 1 | 229 | 229 | 8.0E-124 | – | |
| Phobius | 7 | 26 | 20 | - | – | |
| TMHMM | 10 | 29 | 20 | - | – | |
| Pfam | 11 | 215 | 205 | 4.0E-81 | ||
| Phobius | 27 | 77 | 51 | - | – | |
| TMHMM | 72 | 94 | 23 | - | – | |
| Phobius | 78 | 100 | 23 | - | – | |
| Phobius | 101 | 120 | 20 | - | – | |
| TMHMM | 121 | 143 | 23 | - | – | |
| Phobius | 121 | 142 | 22 | - | – | |
| Phobius | 143 | 187 | 45 | - | – | |
| Phobius | 188 | 212 | 25 | - | – | |
| TMHMM | 188 | 210 | 23 | - | – | |
| Phobius | 213 | 234 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0397700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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