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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PTHR31881
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 16 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.018s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0015379.1
n.a. Uncharacterized protein TCM_046898 [Theobroma cacao] gi|508781891|gb|EOY29147.1| chr0 5986087 5989095 -
1 domain prediction
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Lj0g3v0040919.1
n.a. Uncharacterized protein TCM_046898 [Theobroma cacao] gi|508781891|gb|EOY29147.1| chr0 13384099 13387814 -
1 domain prediction
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Lj0g3v0040929.1
n.a. Uncharacterized protein TCM_046898 [Theobroma cacao] gi|508781891|gb|EOY29147.1| chr0 13384585 13391892 -
1 domain prediction
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Lj0g3v0068549.1
n.a. Uncharacterized protein TCM_046898 [Theobroma cacao] gi|508781891|gb|EOY29147.1| chr0 24552521 24554742 -
1 domain prediction
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Lj0g3v0330889.1
n.a. Uncharacterized protein TCM_019691 [Theobroma cacao] gi|508712544|gb|EOY04441.1| chr0 172932789 172933880 +
1 domain prediction
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Lj1g3v2035080.1
n.a. Uncharacterized protein TCM_046898 [Theobroma cacao] gi|508781891|gb|EOY29147.1| chr1 23786880 23789193 +
1 domain prediction
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Lj1g3v4580640.1
n.a. Uncharacterized protein TCM_046898 [Theobroma cacao] gi|508781891|gb|EOY29147.1| chr1 54723764 54725962 -
1 domain prediction
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LotjaGi1g1v0397700.1
n.a. plant/protein (Protein of unknown function, DUF599); TAIR: AT4G31330.1 transmembrane protein, putative (Protein of unknown function, DUF599); Swiss-Prot: sp|Q981V0|ARLY2_RHILO Argininosuccinate lyase 2; TrEMBL-Plants: tr|I3SDL3|I3SDL3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0397700 LjG1.1_chr1 88423368 88425857 +
1 domain prediction
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LotjaGi1g1v0397700.2
n.a. plant/protein (Protein of unknown function, DUF599); TAIR: AT4G31330.1 transmembrane protein, putative (Protein of unknown function, DUF599); Swiss-Prot: sp|O93308|SMC1A_XENLA Structural maintenance of chromosomes protein 1A; TrEMBL-Plants: tr|I3SDL3|I3SDL3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0397700 LjG1.1_chr1 88423567 88425561 +
1 domain prediction
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LotjaGi1g1v0457500.1
n.a. plant/protein (Protein of unknown function, DUF599); TAIR: AT5G43180.1 transmembrane protein, putative (Protein of unknown function, DUF599); Swiss-Prot: sp|Q9TM34|RPOC2_CYACA DNA-directed RNA polymerase subunit beta''; TrEMBL-Plants: tr|I3SKX7|I3SKX7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0457500 LjG1.1_chr1 96082130 96083454 +
1 domain prediction
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LotjaGi2g1v0169000.1
n.a. plant/protein (Protein of unknown function, DUF599); TAIR: AT4G31330.1 transmembrane protein, putative (Protein of unknown function, DUF599); Swiss-Prot: sp|Q9HH76|UPPS_SULAC Tritrans,polycis-undecaprenyl-diphosphate synthase (GGDP specific); TrEMBL-Plants: tr|I1NIF3|I1NIF3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0169000 LjG1.1_chr2 58197617 58201185 -
1 domain prediction
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LotjaGi2g1v0169200.1
n.a. plant/protein (Protein of unknown function, DUF599); TAIR: AT4G31330.1 transmembrane protein, putative (Protein of unknown function, DUF599); Swiss-Prot: sp|P10747|CD28_HUMAN T-cell-specific surface glycoprotein CD28; TrEMBL-Plants: tr|A0A072UA46|A0A072UA46_MEDTR Plant/F12B17-70 protein; Found in the gene: LotjaGi2g1v0169200 LjG1.1_chr2 58224697 58228370 -
1 domain prediction
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LotjaGi5g1v0047400.1
n.a. plant/protein (Protein of unknown function, DUF599); TAIR: AT4G31330.1 transmembrane protein, putative (Protein of unknown function, DUF599); Swiss-Prot: sp|Q5HPT1|ISPT_STAEQ Isoprenyl transferase; TrEMBL-Plants: tr|I3SYH7|I3SYH7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0047400 LjG1.1_chr5 7970950 7976635 +
1 domain prediction
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LotjaGi5g1v0047400.2
n.a. plant/protein (Protein of unknown function, DUF599); TAIR: AT4G31330.1 transmembrane protein, putative (Protein of unknown function, DUF599); Swiss-Prot: sp|Q5HPT1|ISPT_STAEQ Isoprenyl transferase; TrEMBL-Plants: tr|I3SYH7|I3SYH7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0047400 LjG1.1_chr5 7971098 7973183 +
1 domain prediction
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LotjaGi5g1v0197800.1
n.a. plant/protein (Protein of unknown function, DUF599); TAIR: AT4G31330.1 transmembrane protein, putative (Protein of unknown function, DUF599); Swiss-Prot: sp|Q90953|CSPG2_CHICK Versican core protein; TrEMBL-Plants: tr|V7BDL9|V7BDL9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0197800 LjG1.1_chr5 49403417 49416084 +
1 domain prediction
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LotjaGi5g1v0197800.2
n.a. plant/protein (Protein of unknown function, DUF599); TAIR: AT4G31330.1 transmembrane protein, putative (Protein of unknown function, DUF599); Swiss-Prot: sp|A3CWL3|COFC_METMJ 2-phospho-L-lactate guanylyltransferase; TrEMBL-Plants: tr|V7BDL9|V7BDL9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0197800 LjG1.1_chr5 49403795 49410526 +
1 domain prediction
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