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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0397700 |
| Transcript ID | LotjaGi1g1v0397700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | plant/protein (Protein of unknown function, DUF599); TAIR: AT4G31330.1 transmembrane protein, putative (Protein of unknown function, DUF599); Swiss-Prot: sp|O93308|SMC1A_XENLA Structural maintenance of chromosomes protein 1A; TrEMBL-Plants: tr|I3SDL3|I3SDL3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0397700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:88423567..88425561) extracted from Lotus japonicus Gifu genome v1.2.
GAGATGGAATGGAAGAATTGCTATTTGGATGTCATATTGGTGCCTTTAGGTGTTCTAATGACTGGTGGCTACCATTTCTG GGTGTGGTACAATGTGAGAAATCATCCACACACTACAATTATTGGGATCAATGCTAGTGGTCGAAGGAATTGGGTTGCTA CCATGATGAAGGTATATACCTCTGAAATTTAATGCTCAATGTTTGGTTTTGATGCATTAATTCATGTTAATTTTTTAGTT ATTAATTGATCAATAATCTTACAAGTTTTATAATCTTTAGAGAACAGCCAGCTAATTATAGCCTTTTTTCGGGCCCAAAC TCATGATTATAGTATATCTATATAGTACTTAATTAAGGAACTTTAACTTTCCATGCCATATAATTGGAGTGATCAGCAAC CTGGTGTTGTTTTGTGATAAGCCAAAAAGCACAAGGGGTGCTTATCAACCTGGTGTTGGAATTTTACCTTGTAGCATTTC AGGGGAGGGTAAGAACTATGAAGGGATTAAGGGAATAATGGAGAAATAGAAATTGAGAATAATTTTTTTTTTCTAAATAT CATTTTGCAAGTTATACAATGTTCCTTTTCTACTTGTTTTTTCTTAATTGGTCTTGTTTCTAACAGATACATTGTCATTT AATTAATTGCTGACAAACAAAGCAAGAAAGAATGTTCTTGTTCTTTCTTTATGGTATGCGTCAAAAACCACTATAAGATG TTATTCTAGCTAGGCTTATCCTCTTAGATTTGTTTTTCTTTATGGTACAATTAGCTAGACTATAATCCAAAATGCGTTCT ACCTAGACCTACATAATGTGCTTACTTGTGGGATTCTTTGATTGGTGAAATCACAGTTGGAAATTATTAGCCATTAAATA TAATATTAGAATTTGAATAATTATAGTTGAAAATTAATCATTAATTTAATTACAAATCAATCTTTTAATTATTTTAGGAG TGGTCACATGTAAATATACAACTTTCTGTCAACTTCTGATCTACATACATGTTTAAGGAGGATTGTTAAGCGGTTAAAAA TCATCACTAATGTGTTTGTCAATTGAACGTAAACAAAAACGGTATGTTTAGTCATCATTTACATTTTTTAATATTTTATT TCAATTACGACATACGACAGTTAAACGAATCTCTATCTATCTCTTCTTACCACATTACATGCAAATAACATTCATTAGTT TTCTCTTCTTTTCTTACTACGATGTCTCCACCAATTTTGTATCGTACTCAAATTTTTCTTTTCAAAAATATGCATCATCT CATGTTTCAACAAACATAATCTGCCATATCCCACAATCCTAAAATTTGCACCATATTTTCAAAGTGTTCACTCATTCTTT GTTCCCCACTAGTTAATTTGGTGGTACGCGGAATAGCGACCATGTGAATATACATGATCTAACTAATAATGCATGACTGA TTGGTATAATTTCGGCAGGACAATGAAAAGAAAAATATTCTGGCGGTTCAATCCCTCCGGAACACGATCATGGGCTCGAC ACTAATGGCCACCACCTCAGTTCTCCTCTGCTCCGGCCTCGCCGCAATCATAAGCAGCACCTACAGCGTCAAGAAGCCGC TCAACGACTCCGTCTACGGCGCTCACGGCGAGTTCATGGAAGCACTCAAATACGTGACTCTGCTCACTGTCTTCCTCTTC TCCTTCTTCTGCCACACACTGTCCATCAGGTTCATCAACCAGGTCAACATTCTCATCAACATTCCACAGGATCCAATGTC ATTGGTCACACCAGAATATATCAATGATATTTTGGAGAAAGGTTTCATTCTGAACACTGTTGGGAACAGGCTTTTCTACA CTGCACTTCCTCTTTTGCTCTGGATTTTTGGCCCTGTTTTGGTGTTTCTCTGCTCATTGTCTATGGTTCCGGTGCTTTAC AATCTTGACTTTGTGGTGCCTAGTGATAAGGGGAAGAAGAAGATGGAGAAGAATGAGAATGGAGATTTTGTATGA
CDS sequence (LotjaGi1g1v0397700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATGGAAGAATTGCTATTTGGATGTCATATTGGTGCCTTTAGGTGTTCTAATGACTGGTGGCTACCATTTCTGGGT GTGGTACAATGTGAGAAATCATCCACACACTACAATTATTGGGATCAATGCTAGTGGTCGAAGGAATTGGGTTGACAATG AAAAGAAAAATATTCTGGCGGTTCAATCCCTCCGGAACACGATCATGGGCTCGACACTAATGGCCACCACCTCAGTTCTC CTCTGCTCCGGCCTCGCCGCAATCATAAGCAGCACCTACAGCGTCAAGAAGCCGCTCAACGACTCCGTCTACGGCGCTCA CGGCGAGTTCATGGAAGCACTCAAATACGTGACTCTGCTCACTGTCTTCCTCTTCTCCTTCTTCTGCCACACACTGTCCA TCAGGTTCATCAACCAGGTCAACATTCTCATCAACATTCCACAGGATCCAATGTCATTGGTCACACCAGAATATATCAAT GATATTTTGGAGAAAGGTTTCATTCTGAACACTGTTGGGAACAGGCTTTTCTACACTGCACTTCCTCTTTTGCTCTGGAT TTTTGGCCCTGTTTTGGTGTTTCTCTGCTCATTGTCTATGGTTCCGGTGCTTTACAATCTTGACTTTGTGGTGCCTAGTG ATAAGGGGAAGAAGAAGATGGAGAAGAATGAGAATGGAGATTTTGTATGA
Protein sequence (LotjaGi1g1v0397700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEWKNCYLDVILVPLGVLMTGGYHFWVWYNVRNHPHTTIIGINASGRRNWVDNEKKNILAVQSLRNTIMGSTLMATTSVL LCSGLAAIISSTYSVKKPLNDSVYGAHGEFMEALKYVTLLTVFLFSFFCHTLSIRFINQVNILINIPQDPMSLVTPEYIN DILEKGFILNTVGNRLFYTALPLLLWIFGPVLVFLCSLSMVPVLYNLDFVVPSDKGKKKMEKNENGDFV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 6 | 6 | - | – | |
| PANTHER | 1 | 224 | 224 | 1.7E-117 | – | |
| PANTHER | 1 | 224 | 224 | 1.7E-117 | – | |
| Phobius | 7 | 26 | 20 | - | – | |
| TMHMM | 10 | 29 | 20 | - | – | |
| Pfam | 11 | 210 | 200 | 4.3E-76 | ||
| Phobius | 27 | 72 | 46 | - | – | |
| TMHMM | 67 | 89 | 23 | - | – | |
| Phobius | 73 | 95 | 23 | - | – | |
| Phobius | 96 | 115 | 20 | - | – | |
| Phobius | 116 | 137 | 22 | - | – | |
| TMHMM | 116 | 138 | 23 | - | – | |
| Phobius | 138 | 182 | 45 | - | – | |
| TMHMM | 183 | 205 | 23 | - | – | |
| Phobius | 183 | 207 | 25 | - | – | |
| Phobius | 208 | 229 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0397700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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