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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0399600 |
| Transcript ID | LotjaGi1g1v0399600.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Signal peptide peptidase-like protein; TAIR: AT2G03120.1 signal peptide peptidase; Swiss-Prot: sp|O81062|SIP_ARATH Signal peptide peptidase; TrEMBL-Plants: tr|I3T5V7|I3T5V7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0399600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:88670980..88675510) extracted from Lotus japonicus Gifu genome v1.2.
TCAATCGATGTTAATGGAATTTTGTATGTCATTGCAGGTTTAACCTTGGCACCGCTTGTTGTGAAAGTGGATCCGAATTT AAATGTTATTTTGACTGCCTGCATCACTGTGTTTGTCGGATGTTATCGTTCTGTCAAACCAACCCCACCAACTGTAAGTT GTAGCTTTGCCCATTCTCTGCTTCACATTGCGCTATTCGTTACTAGAGATCTGATTTTTCTGGACTATGTTGTGAACAAT TATGCAGGAGACGATGTCCAATGAGCATGCCATGCGGTTTCCCTTTGTTGGGAGTGCAATGTTGCTATCACTTTTCTTAC TCTTTAAGTTTCTCTCAAAGGACTTGGTGAACACTGTTTTGACAGGCTACTTCTTTGTACTTGGGATTGTTGCGCTCTCG TATGTTATTTTCTTTGTTTTCATTGTACTTGTTATGTAGTCCATAGAATCATTTTTTACATATATGCTATTTTATCGCTC ATTTTTTCTTCTACTGTCTACAGGGCAACATTATTGCCATCCATTAAACGCTTTCTGCCAAATCATTGGAATGACGACAA CATAGTCTGGCGTTTTCCATATTTTCGTTGTATGTGACATTCTGCCTCCTTATTTTTCTTTTGCTTTGATAGATGTTTTT CTCTTCTTCCTTTGAGTTTGTAGTTCAATGATGGCATTCTTTGGCTATTATCAATCATAACACCGATAGCTGCAACTTGT TCTGTGATGTACCTAATTGAATATCAAAATGTTTGGGAGTTCTTTATTTATTGACAATGCATATACTGTTTCAACTAGAT GTTTCATTCTAAGTTTTAACCCTTTTTTTAGTGAAATTACTTAATATCTAAGAGTAGGTCATGGTGCATGTTTGTATCTA TTTTTTAATGCTCCTTGCACATAAAAATTCATTCCCAAATGAATCGTGAACTATTCTTGAAAAGGGATTTTAAAATTACC AAGTAGAACAAAGAATAATGCTTAATGCATTCATTCCTTGTTAAAGTGTGTTGTTTTTGCTACTTTCAGCTGTTTGCACT TGATCTAGTTGACATTAAGTTGCTTCTATCATGCAGAATGATATTTTTCCTTACACCTTTCTTAAACAGCTTTAGAGGTT GAGTTTACAAGATCACAGATAGTTGCTGCAATCCCTGGGACATTTTTTTGTGCTTGGTATGCTTTGCGGAAGCATTGGTT GGCAAATAATATATTGGGTCTTGCTTTCTGTATTCAGGTTTGGCACTTTACCTGCATTTATGTAATAATATGTACATCTA TGTTTGTATATATAAAATTTAATTGATTGGTACACAACCAATCAGAAACAACTGATTTTAAATAAAAATCTGCATACTAA CAACCAGTTATAGCTTTTATTCATGCCGATTATAAATAGATTGAAACTGGTCGAATTATAAATCGATTGAAACTGATAGA TAATAGAAAACCTGTATGCCGGCAGTTTTACTTAATAAACTTATATATTTATGGAATTATGGTATCTAATTGACAATAAA AAATGGACAGCATTATTCAAGGTTCGATAGTGGTAGGTTTGCTTACAGATTTTGAGAGTATAGATACCAATTTACTTGAC AAATATCAAATGACAACAATTAGAAAATGTACATATACATGTCCATCAACCATTAATTATTTTAAGGATACTGAACCAAT TATATTTGCATGTCCATCAACCATTTCCTATAATAATTCATTTTTGTCAATTGAACCAGTAAGTCATGCATTTTATACGA TTAATGGTGTACATTTACATGTCCATCAACCATTAATTATTTTAAGGATACTGAACCAATTATATTTGCATGTCCATCAA CCATGTCCTATAATAATTCATTTTTATCAGTTGAACCAGTAAGTCATGCATTTTATACGATTTAAATCAGTAAACAGGAT GTGATACCTATTACTTCATCCTTGACATTTACAGGGAATTGAAATGCTTTCTCTTGGGTCTTTCAAGACTGGTGCTATTC TCTTGGTAGGTATTTTTAACTGTAATTAATGGTGCTCAAGGCTTCAATATTTTTAAAACCATTTAATTGCATGTTTTAAA AGATCTTGTTTTCTATACCAAAAATCCGTTTGCTGCAGATAAACCTGTCCACTCATCTTTGTCTGTTTCTTTTAAGAAAT TTTAGAGAATCATGTGGCTTTTGTGGTTGTTATAAAATACAATAAAATGGACTTGAGCTTGATTTACTTGCTCTCTATTG GTTTGTCCATTTACTTTTGAGTTTTGACCATCTCAATCACATGTAAACTCATAAAATGCCTGATTAGATTGCCTTCTATA TTTTTTCCCATGTATATAATCAAATCTTACCTTCCAAAAGCATGTGATTTTTCCCATGTATATTATTCTTTGACTTTTAA ATTCATGTATTTTGCAGGCTGGTCTTTTTGTCTATGACATTTTCTGGGTTTTCTTCACTCCTGTGATGGTTAGCGTTGCC AAATCATTCGATGCTCCAATTAAGGTTAAAATCTCGCGAACCAAAATTGAACTTTTTGTTTCAGATGAAAAATGTAACAA TTTTTCTGATACATTTTTTTTTCCAGCTATTGTTCCCTACAGCAGATGCTGTGAGGCCATTTTCAATGCTTGGGCTTGGT GATATTGTTATCCCTGGTAGGATGACTCATTGATGCCGTATTGATTTTTTTTTCCTTTTTGGTGAAATTACCTGTAATAA TGTAGTTCTAAGTATATATCTGCGATTGGATTTTTTAACCTGTGTTTGGAAGATTTTGGGAGAAGGGGATAGAATGGAAA AGGGATCAAATGAACGTTAATCATAGGGAAAGAGAGTTTCACATCGCTGTCATGTGATGAGTTCGCATTTGTGAGGCTAA CGATTCCCTCTAATTTGCCGGGCCTGTTGTGAAAAAAGCCTGCTTGGACCAGTCCAGTGGAACTTCCATACTAAAGAAAA ATGGAAAGGGAAGGGGTGGGGTGGAGTGGAAAAGAGATATGTTCCCTTGTTTCCCCCTGTTTGGATGATTAAATTAAATG AGGGAAGGAAGAGGAAGGTAAAGGTCGCGTGTGTAGAGTTTCCTCATAACCTACATTGGAGGGGAACAAAAAGTGGGGGG GAAGGGCTTTCCCCAAATTCTCTTCCCCCCCACAAGTTTTTGGAATTCCAAACAAACAAGGCGACTTATCCCCATTTCTA CCTTTTAATTCTCTAACAGTAAGAGAACAAATACGGCAACCAACTAGAAAACAACAGAGAGAGACTGAGAGGGAGATAAC ACATATCTCTAACATAGTTCAATTCTCCCATTATTCCTCATGCAAGTGACGATACAATCCAACTCCCTCGGTATCTAGGG CTTCAAAGTTCTCCTAGTTTTAGTCATGAGACATTGTCGTGTCCCTTATTTTTTCCATTATGAAAAACTTTTTGTTGAAT TAAATTTGTCTTTGCTTGATTGGACAAACTGTAGCATGTGGTGGTAGGAGACTGTTTTTAAAGAGGACTTTACAAATATT TTTTGCTTCTTATGAATTTAAAATACTGATTTTAAGTTGTAAGTCAGATTATATGCTACTTCATGCTTTTGCTTTCAAGA TAATTTCAGTTATTAGTTTACTGCCTCAAATTAGAGTGGCGATGCTTCTCGTTGGATGTGTCAGAAATTAGTCTGTATCA ATAAAGACTAGTGTTATTTAAAAATTTTGAAATGTGTATATGCATGCAGTCAATTGATGTGTAGAATCCATTCATACATA TATGCAAAAGTAAATAGTTTATCTACAATCACTTGGTTGTTACATCTATTTTGACCACAAATGTTTTCTCTTCAGGTATT TTTGTAGCATTGGCTTTACGGTTTGATGTGTCCAGAGGAAAACAGCCCCAGTATTTCAAAAGTGCATTTTTAGGATACGC TGTTGGTGTGATCCTTACAATTGTAGTGATGAATTGGTTTCAGGCTGCACAGGTGACTGATAGTTCCATTTTATTCCTTT TTTATTGATAGTTTTTTTTGGGGGGGGGGGTCAGGGTTGTAATCATTATTGCCCAATGCACTACTAATACATGGATACCT TAGTTTGTGGAACTATCATGGATTTTGGAGACTATCCTTCTCTACTAACGTTTTCCCCTTTATTGTATTCTTGTTGTCAG CCTGCTCTTTTGTATATTGTACCTTCTGTAATTGGATTTTTGGCTGCTCATTGCGTATGGAATGGTGAAGTCAAACAGGT TTGTTTCTCTTTTCTCATATCAGTGTTACTCCATCCTTTTTATGTGTTTTATTTGCTTCATGTTTTTTTTATATAGCATG TATAATGGAAATAGTGAATATTATTTTCAATGTAACCCCATTAAGAAATGATAAAGTGCCACATATTGCTGTAAAATCTT TTGGCAGTTTCTTAAAAAGGATTATATGAGGCATGAAATCGGCCACTGATAGTGCCATACATGGAACTCATTGCCAGTAG ACCAACTTTATCCCATATAGCAATAATTGACATCATCTTTGGCACCACTAG
CDS sequence (LotjaGi1g1v0399600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCAATGAGCATGCCATGCGGTTTCCCTTTGTTGGGAGTGCAATGTTGCTATCACTTTTCTTACTCTTTAAGTTTCT CTCAAAGGACTTGGTGAACACTGTTTTGACAGGCTACTTCTTTGTACTTGGGATTGTTGCGCTCTCGGCAACATTATTGC CATCCATTAAACGCTTTCTGCCAAATCATTGGAATGACGACAACATAGTCTGGCGTTTTCCATATTTTCGTTCTTTAGAG GTTGAGTTTACAAGATCACAGATAGTTGCTGCAATCCCTGGGACATTTTTTTGTGCTTGGTATGCTTTGCGGAAGCATTG GTTGGCAAATAATATATTGGGTCTTGCTTTCTGTATTCAGGGAATTGAAATGCTTTCTCTTGGGTCTTTCAAGACTGGTG CTATTCTCTTGGCTGGTCTTTTTGTCTATGACATTTTCTGGGTTTTCTTCACTCCTGTGATGGTTAGCGTTGCCAAATCA TTCGATGCTCCAATTAAGCTATTGTTCCCTACAGCAGATGCTGTGAGGCCATTTTCAATGCTTGGGCTTGGTGATATTGT TATCCCTGGTATTTTTGTAGCATTGGCTTTACGGTTTGATGTGTCCAGAGGAAAACAGCCCCAGTATTTCAAAAGTGCAT TTTTAGGATACGCTGTTGGTGTGATCCTTACAATTGTAGTGATGAATTGGTTTCAGGCTGCACAGCCTGCTCTTTTGTAT ATTGTACCTTCTGTAATTGGATTTTTGGCTGCTCATTGCGTATGGAATGGTGAAGTCAAACAGTTTCTTAAAAAGGATTA TATGAGGCATGAAATCGGCCACTGA
Protein sequence (LotjaGi1g1v0399600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSNEHAMRFPFVGSAMLLSLFLLFKFLSKDLVNTVLTGYFFVLGIVALSATLLPSIKRFLPNHWNDDNIVWRFPYFRSLE VEFTRSQIVAAIPGTFFCAWYALRKHWLANNILGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKS FDAPIKLLFPTADAVRPFSMLGLGDIVIPGIFVALALRFDVSRGKQPQYFKSAFLGYAVGVILTIVVMNWFQAAQPALLY IVPSVIGFLAAHCVWNGEVKQFLKKDYMRHEIGH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 266 | 266 | 1.6E-158 | ||
| PANTHER | 1 | 266 | 266 | 1.6E-158 | ||
| Pfam | 1 | 267 | 267 | 5.6E-90 | ||
| SMART | 1 | 256 | 256 | 8.7E-90 | ||
| Phobius | 1 | 5 | 5 | - | – | |
| TMHMM | 5 | 24 | 20 | - | – | |
| Phobius | 6 | 24 | 19 | - | – | |
| Phobius | 25 | 35 | 11 | - | – | |
| TMHMM | 31 | 53 | 23 | - | – | |
| Phobius | 36 | 56 | 21 | - | – | |
| Phobius | 57 | 82 | 26 | - | – | |
| TMHMM | 81 | 103 | 23 | - | – | |
| Phobius | 83 | 103 | 21 | - | – | |
| Phobius | 104 | 133 | 30 | - | – | |
| TMHMM | 133 | 155 | 23 | - | – | |
| Phobius | 134 | 158 | 25 | - | – | |
| Phobius | 159 | 177 | 19 | - | – | |
| TMHMM | 175 | 197 | 23 | - | – | |
| Phobius | 178 | 197 | 20 | - | – | |
| Phobius | 198 | 208 | 11 | - | – | |
| Phobius | 209 | 231 | 23 | - | – | |
| TMHMM | 210 | 232 | 23 | - | – | |
| Phobius | 232 | 236 | 5 | - | – | |
| TMHMM | 237 | 259 | 23 | - | – | |
| Phobius | 237 | 255 | 19 | - | – | |
| Phobius | 256 | 274 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Aspartic-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi1g1v0399600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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