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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0402400 |
| Transcript ID | LotjaGi1g1v0402400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNase; TAIR: AT2G39780.1 ribonuclease 2; Swiss-Prot: sp|O80322|RNS1_PYRPY Ribonuclease S-1; TrEMBL-Plants: tr|I3SAC9|I3SAC9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0402400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:89076740..89078095) extracted from Lotus japonicus Gifu genome v1.2.
CTTAGTTTAAGAAACTTTGAAATCTATATATACCCACATTTCTCATCTCATGTCATCATCATCTCATTCAGTTCATTGTG AAACTTTCTCATCTTGTTTTCTCTCATCTACCAGTCCAGCATGAAAAATCTTCTGTTCTTGATTTTTATCCTCTCTCTTA TTGTGCTAGGAGAAGCACAAGTTGCATATCAAATGCTGATGCTGTCTCTTCAGTGGACACCAACTGTCTGTTTGGTTAAT ACATGTGACGCTGGAAAAGTAGCAAGTTTCACCAAAAAATTTACTATACATGGTTTGTGGCCTGGAAATCACTATAATCC CCAGCCCAAGTGCCCACAATACTATTATAACAGCTTTGAGCCCAAAGTGAGTATCCCTTTTGTATTTTCTGTTTGCTAGA TGTTTGTTGACTTCACCTTCTTTTATGATTATTTTTTGTTTATTTTGCTTTTTTGTTGGCTTCTTCGGCTTTGTTCATTT TATAATACCTTATATTAAAAAGTTGGAACTGGATTCTAATACTTTAAATTTTATAATACCCAAACTCTGAAAAATTTCTC AACCTTAATTTCATATACAAGAAGCCGCAGCCTCTCTCACCTCACTTCTCCTCTCTCCACAACACAAACTTGTTATGATT CCATTTCTTTTAATTGATTTTTTCATTCTTGTAGACTGTTAGTTTAAAAGGACAACTGGCCGTTAATTGGCCAAATATGC TTGCGGCTGACGATGAATTTATGTTTTGGGCGCCGGAGTATGAAAAGCACGGAACATGTATGGTAAACGGTGGCAGTTTT CAGCAAGGGGACTATTTTGATACTACTCTGAAGCTGAAGTGGCAGGTTGAAGCCATTTCTGACATCCGAGTGGCATTGAG CAGTATTCAACCAAACAATTTGGAGCCATTAAACAAGATTCTGTTACTTCTCCGGTCCACATATAATGTTTATCCTCAGC TTGCGTGTCCCTGGACTCAGAAAAATACTTTAGCCGAGGTCCGATTCTGCTTTGATAAGTTCACATTGCAGCTCATCAAT TGTCAGAACACAATTGTAGTTTGTGGCACTGGCAGCGGTGGCACCGATATAATGATTCCAGGATGACAATTTATATGTTA CTTTAAATAAAGCTTGTGGAATGGGATGCTACAGAGGTGTCTCAATTATAAAATAAAGTAAAGATTATCGAGATATATAA ATTATGTTTTGAATGTGAATCAAGCATTTAAGCATTTACGCGTTATTTTTTTTTGTTCAGTACATGTATGAATGATTCTT CCACAAACAAGAATGTGTTGTGAAAAAACAATAATAGGACTACAAAGAAGCTCAGACATAGAAAAAGGAATCAGAG
CDS sequence (LotjaGi1g1v0402400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAAATCTTCTGTTCTTGATTTTTATCCTCTCTCTTATTGTGCTAGGAGAAGCACAAGTTGCATATCAAATGCTGAT GCTGTCTCTTCAGTGGACACCAACTGTCTGTTTGGTTAATACATGTGACGCTGGAAAAGTAGCAAGTTTCACCAAAAAAT TTACTATACATGGTTTGTGGCCTGGAAATCACTATAATCCCCAGCCCAAGTGCCCACAATACTATTATAACAGCTTTGAG CCCAAAACTGTTAGTTTAAAAGGACAACTGGCCGTTAATTGGCCAAATATGCTTGCGGCTGACGATGAATTTATGTTTTG GGCGCCGGAGTATGAAAAGCACGGAACATGTATGGTAAACGGTGGCAGTTTTCAGCAAGGGGACTATTTTGATACTACTC TGAAGCTGAAGTGGCAGGTTGAAGCCATTTCTGACATCCGAGTGGCATTGAGCAGTATTCAACCAAACAATTTGGAGCCA TTAAACAAGATTCTGTTACTTCTCCGGTCCACATATAATGTTTATCCTCAGCTTGCGTGTCCCTGGACTCAGAAAAATAC TTTAGCCGAGGTCCGATTCTGCTTTGATAAGTTCACATTGCAGCTCATCAATTGTCAGAACACAATTGTAGTTTGTGGCA CTGGCAGCGGTGGCACCGATATAATGATTCCAGGATGA
Protein sequence (LotjaGi1g1v0402400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKNLLFLIFILSLIVLGEAQVAYQMLMLSLQWTPTVCLVNTCDAGKVASFTKKFTIHGLWPGNHYNPQPKCPQYYYNSFE PKTVSLKGQLAVNWPNMLAADDEFMFWAPEYEKHGTCMVNGGSFQQGDYFDTTLKLKWQVEAISDIRVALSSIQPNNLEP LNKILLLLRSTYNVYPQLACPWTQKNTLAEVRFCFDKFTLQLINCQNTIVVCGTGSGGTDIMIPG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| SignalP_EUK | 1 | 19 | 19 | - | – | |
| Phobius | 4 | 15 | 12 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| PANTHER | 9 | 207 | 199 | 5.4E-40 | ||
| Phobius | 16 | 19 | 4 | - | – | |
| Phobius | 20 | 225 | 206 | - | – | |
| Gene3D | 22 | 214 | 193 | 3.3E-40 | ||
| SUPERFAMILY | 23 | 210 | 188 | 4.71E-36 | ||
| Pfam | 24 | 205 | 182 | 2.3E-30 | ||
| ProSitePatterns | 54 | 61 | 8 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | Ribonuclease T2 activity | Catalysis of the two-stage endonucleolytic cleavage to nucleoside 3'-phosphates and 3'-phosphooligonucleotides with 2',3'-cyclic phosphate intermediates. |
Expression pattern of LotjaGi1g1v0402400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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