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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0403000 |
Transcript ID | LotjaGi1g1v0403000.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | RNase; TAIR: AT2G39780.1 ribonuclease 2; Swiss-Prot: sp|O80322|RNS1_PYRPY Ribonuclease S-1; TrEMBL-Plants: tr|I3SAC9|I3SAC9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0403000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:89195365..89196735) extracted from Lotus japonicus Gifu genome v1.2.
CTTAGTTTAAGAAACTTTGAAATCTATATATACCCACATTTCTCATCTCATGTCATCATCATCTCATTCAGTTCATTGTG AAACTTTCTCATCTTGTTTTCTCTCATCTACCAGTCCAGCATGAAAAATCTTCTGTTCTTGATTTTTATCCTCTCTCTTA TTGTGCTTGGAGAAGCACAAGTTGCATATCAAATGCTGATGCTGTCTCTTCAGTGGACACCAACTGTCTGTTTGGTTAAT ACATGTGACGCTGGAAAAGTAGCAAGTTTCACCAAAAAATTTACTATACATGGTTTGTGGCCTGGAAATCACTATAATCC CCAGCCCAAGTGCCCACAATACTATTATAACAGCTTTGAGCCCAAAGTGAGTATCCCTTTTGTATTTTCTGTTTGCTAGC TGTTTGTTGACTTCACCTTCTTTTATGATTATTTTTTGTTTATTTTGCTTTTTTGTTGGCTTCTTCGGCTTTGTTCATTT TATAATACCTTATATTAAAAAGTTGGAACTGGATTCTAATACTTTAAATTTTATAATACCCAAACTCTGAAAAATTTCTC AACCTTAATTTCATATACAAGAAAAAAAATTATATACAAGAAGTCGCAGCCTCTCTCACCTCACTTCTCCTCTCTCCACA ACACAAACTTGTTCTGATTCCATTTCTTTTAATTGATTTTTTCATTCTTGTAGACTGTTAGTTTAAAAGGACAACTGGCC GTTAATTGGCCAAATATGCTTGTGGCTGACGATGAATTTATGTTTTGGGCGCCGGAGTATGAAAAGCACGGAACATGTAT GGTAAACGGTGGCAGTTTTCAGCAAGGGGACTATTTTGATACTACTCTGAAGCTGAAGTGGCAGGTTGAAGCCATTTCTG ACATCCGAGTGGCATTGAGCAGTATTCAACCAAACACTAAGGAGCCATTTAACAAGATTCTGGGACTTCTCCAGTCCACA TATAATGTTTATCCTCAGCTTGCGTGTCCCTATTTTTGGCCAGATACTTTAGCCGAGGTCCGATTCTGCTTTGATAAGTT CACATTGCAGCTCATCAATTGTCAGAACACAATTGTAGTTTGTGGCAGAGGTGGCACCGATATAAAGATTCCAGGATGAC AATTTATATGTTACTAGCTATATTTAAATAAAGCTCGTGGATACAGAGGTGTCTCAATTATAAAATAAAGTAAAGATTAT CGAGATATATAAATAATGTTTTGAATGTGAATGAAGCATTTAAGCATTTACGCTTATTTTTTTGTTCAGTACATGTATGT ATGATTTTTCCACAAACAAGAATGTGTTGTGAAAAAACAATAATAGGACTACAAAGAAGCTCAGACATAGAAAAAGGAAT CAGAGGCAGCT
CDS sequence (LotjaGi1g1v0403000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAAATCTTCTGTTCTTGATTTTTATCCTCTCTCTTATTGTGCTTGGAGAAGCACAAGTTGCATATCAAATGCTGAT GCTGTCTCTTCAGTGGACACCAACTGTCTGTTTGGTTAATACATGTGACGCTGGAAAAGTAGCAAGTTTCACCAAAAAAT TTACTATACATGGTTTGTGGCCTGGAAATCACTATAATCCCCAGCCCAAGTGCCCACAATACTATTATAACAGCTTTGAG CCCAAAACTGTTAGTTTAAAAGGACAACTGGCCGTTAATTGGCCAAATATGCTTGTGGCTGACGATGAATTTATGTTTTG GGCGCCGGAGTATGAAAAGCACGGAACATGTATGGTAAACGGTGGCAGTTTTCAGCAAGGGGACTATTTTGATACTACTC TGAAGCTGAAGTGGCAGGTTGAAGCCATTTCTGACATCCGAGTGGCATTGAGCAGTATTCAACCAAACACTAAGGAGCCA TTTAACAAGATTCTGGGACTTCTCCAGTCCACATATAATGTTTATCCTCAGCTTGCGTGTCCCTATTTTTGGCCAGATAC TTTAGCCGAGGTCCGATTCTGCTTTGATAAGTTCACATTGCAGCTCATCAATTGTCAGAACACAATTGTAGTTTGTGGCA GAGGTGGCACCGATATAAAGATTCCAGGATGA
Protein sequence (LotjaGi1g1v0403000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKNLLFLIFILSLIVLGEAQVAYQMLMLSLQWTPTVCLVNTCDAGKVASFTKKFTIHGLWPGNHYNPQPKCPQYYYNSFE PKTVSLKGQLAVNWPNMLVADDEFMFWAPEYEKHGTCMVNGGSFQQGDYFDTTLKLKWQVEAISDIRVALSSIQPNTKEP FNKILGLLQSTYNVYPQLACPYFWPDTLAEVRFCFDKFTLQLINCQNTIVVCGRGGTDIKIPG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 19 | 19 | - | – | |
Phobius | 1 | 3 | 3 | - | – | |
SignalP_EUK | 1 | 19 | 19 | - | – | |
Phobius | 4 | 15 | 12 | - | – | |
TMHMM | 5 | 27 | 23 | - | – | |
PANTHER | 9 | 207 | 199 | 7.5E-38 | ||
Phobius | 16 | 19 | 4 | - | – | |
Phobius | 20 | 223 | 204 | - | – | |
Gene3D | 22 | 214 | 193 | 2.0E-39 | ||
SUPERFAMILY | 23 | 211 | 189 | 2.49E-36 | ||
Pfam | 24 | 205 | 182 | 1.2E-29 | ||
ProSitePatterns | 54 | 61 | 8 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
Molecular function | Ribonuclease T2 activity | Catalysis of the two-stage endonucleolytic cleavage to nucleoside 3'-phosphates and 3'-phosphooligonucleotides with 2',3'-cyclic phosphate intermediates. |
Expression pattern of LotjaGi1g1v0403000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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