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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0403400 |
| Transcript ID | LotjaGi1g1v0403400.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|I3S190|I3S190_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0403400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:89240585..89247756) extracted from Lotus japonicus Gifu genome v1.2.
CTTTTTTTGTATAAATTCCAACCAGCAATAGGTCCTCCATTTCTCAAGTCCCCACCTCCCTCCCTCTCTCCCCCTTCCTC TCCCTCTCTGTTGGGCGTGTTGTGTGTTTGGGTGGATAAAGATGGCAGGTGGTAGGAGAATCTTGTCCATGTTTCTTGTG GCATTTATGTGGATTAATGCCCAATATGCATTTGTAAGTTGTACTTTGACACCACAAGTGCAAAGAAAAATTGCTAGAGC CAATCAAAAGGGACCTTATCTTGGTCTGATCATACCAAATACTTTTGAACTAGACCCTCTTCTTCAGAATTCAGACTACA CTCCAAGTAAACTCACCATAGACTTTGCTGGTAAGTGCCATGTAATTTCACTATATTATTAATACACTTATGATTATAAT TATGATGTTTAATGTATATGTCTTTTGGTACGAAAAACACTATTACATCAATTATTGAAGGAAGGAGATTTCGATTTGGA GCCATTGGCCACAAGCCTGTTATACTGGTCATGACAGGAATGGGCATGGTACACTTTTCTAATTTTCTCATTTTAGGCTA TGATTAGACTCGTTAGTGCAAACACATTTTAGTACTCTTGTTGTACACAATCTTTGGATTCACTTTTAATCTTTTCAGAA TCACTTCTATTTTCATAAATTTATAGTTGAGGGTTATGAATTAATGATTGGAATATTTTTGGAAACATAAAGATAAATGC AGGTGTAACTACTCAGCTTCTATTAAGCTTATTCACAGTTGAAGGAGTGGTGCACTACGGTGTTGCTGGAAATGCAAACC CATCCTTGCATATTGGAGATGTAGCCATTCCTCAATACTGGGCTCATTTAGCACTTTGGAGTTGGCAGGTATATATATTA CCAAAACTCTAATAATATTTTTATTGCTCAATTACACTTTGTGTCCTTCATCTATCACGATTGTACAATTTGGATCGCTG ATGTTTACAACAGACGATTTTGGTTCTGTAATTTTTTTGACTGGTTATTTGTATTGTGCAGAGGTATGGGCAAGGGCCTA ATGATTCGTTACCCTTTGACTTCACAAAGGAAGTAGGATACTTAGAATTTGCCAATTACACCTCAAACTCATCTTCAAGT GTTGACAGTGATAACCAGCTCAACAATATCTGGTACGAACCAGAGGAAGTTTTTCCAGTTGATGGCATTCCAGAAGAGAC CAAACATGCTCTTTGGGTCCCTGTAGATTCCAAGTACTACCACATTGCTCAAAAACTCAAGGCAAGTTAGAGCAACTTTA CCATCTACTCATAAATCATATTTTTACTATTAATATTTAGTATACATTGTTTATAATTTATATCTTATGTGCTAAAATTA ATTTACAAGAATTTTGTTTTTGAAACTTTTGAACAAGACTTTTCTTGATGGATGGTACATATATCATATATCATTTAAAT TATTCTGATATTTAGTGAAACCCAAAAAGATTTGAAGTCATGATTTAGCAAGATTGTAGTGTTAATTACTCAATTAATCC GATACTTTTATGGTATACACATGTGGTTGATTAAGTTTTGTAATGTATGTTCAGGGCTTGAAGCTAAAGGCGTGCATAAA CTCAACGACATGCTTGTCCACTATACCAAAGGTGGAACTTGTTGATAGAGGAACAAGTGCGAGCATCTACCTAGACAACG CAGCGTACCGAACCTTCCTCTACAACAAATTCAATGTGAGCCCAGTGGACATGGAAAGTGCATCAGTGGCTCTTATATGT TTGCAACAAAGAGTGCCATTCATTGTTTTCAGGGCTCTCTCCGACTTGGCCGGTGGCGGCTCCGCCCAGTCTAATGAGGC CGATACTTTCGCATCACTCGCCGCCACTAACTCTGTCACAGTGGTTGTTGAGTTTGTTAAGCTCTTGTCACTCCACCGCA AGAGGTGGAACATGTTATAGTAAGCTATCATAAATTAATTTTTTTTTTCTATTTAAATAATGAGTGTAAATTATTATTTA AACTCATTATATAAGAATCAAATGTGAAACTTTTATCAAACCGGAAACAATCACTCACTTACACTTTCAAAAAAAAATGA GTGATTGTTTCCGGTTTGATAAAAGTTTCACATTTGATTCTTATATATGAAAAACGTTTCAAGGACAGCTAACCCTACAA GGATATGAATGTTTCCATGACTAGAAATACTTTTTTAAATTACAATAAAAGATAGCAGTTGTTTGAAATATAAATAAGTT ACACTTGAAAATGCCACTTTGAGTATGCCTGGGAAAAACTGACTAACTGATAAATTAGTTGTAACTATTTTTTTTTAAGG CTGAAAGGACATATTGAAGATTAGTAAGTTCTTGAGTACACTTCACTCAAGTAGGCAATATAAGAAAGGAAATTAATCTT TGTCAATTACAGCTCATAGCACATTTGACCTGATGTGCACTTGCTTTGGCAAGAAGTCTGCAAATTGATTCCTTAACCTC TTGAGCATAATGAAGAGTTTCCAAGGTTTTGCAAAATTATTATTCACCTACTCAACTGCCAAAGTAGAATCACTTTCAGT CACAATATTTCTAAGGCCCACGCTTACCCCTCCGATGGCCTCCCCGAGTTCAGCCCGTGCCTGCCTCTCAGTTAGCGACG CGCCGCCTTACTCTGTCCGTTCATCCATGTCCTCTGACGGTGCGAGTCCGCCGGAAGCCGCGTCTGTGTCTACCATCGAG GTAAATCATTTGATCGATCACAGTTGTAATTTGTAAACCCTAAACCCAAACAACAATTGCTATTGCTACTGTATCTATCT ATCAATCTCACTTTGTGAATTCAATTCAATTCAGATTCAGATTCAAACACTGCATATTGACATGGATCGAGATTTGATAA TTGAAATCCTTTTGAGGTTACCGGTGAAGTCTATTGTACGATTCAAGGCTGTGTGCAAGTTATGGAGATCTCTCATATCC GATCCCCTCTTTGCATCATTACATTTTCAACGTGCTGCTCCTTCACTCCTTTTCGCTGACTCTCATGCCATTCGAACCAT TGACTTAGAGGGACCGCTTCAATCTCATCGTGTTTCTCAACCAATCAATTGTCACTTTTTGTCTAATTATCATGATTTAT CCTTGCCTCGTAACTGTATTTCGATTCACGGTTCGTGTAGAGGCTTTCTGCTAATCACCTGGATTAGTAATATTGGTTAT GGGCACCCGTGGAATGATAGTCTCTACCTGTGGAATCCATCCACACATGTCCACAAACCAATACCATCATCTCCTGTTGT TGACACCAATGTTTTAAGTCATCTATTTGGATTTGGTTACGATTCCTCGACAGATGACTACTTGGTGGTTCGAGTGCCCG TTACGGACGGTAACCAACCTACTCATTTACCAGATGTGCAGTTTTTCTCATTGAGAGCTAATATGTGGAAATATACCGAG GGTGTTGATTTGCCTCCCTTGACCACTATTGACCTTTGTCATGGATTGCTCTTTAACGAGGCTATTCACTGGGCGGTTAG TAACTGGGTCGATGGTGTTACGAACATGTTTATTATTGCCTTTGATTTAATGGAAAAGAGACTCTTAGAGATACCCATGC CTCATGGTCTTCTTTTCCCTGGTTTTTCTTTGTGGGTGCATGGAAGATTTTTAAGTCTATCAATTTTGCAGAGAGATGGT ACATGTGAAATATGGGTTATGAAGAAATACAAAGTACTGACATCTTGGACCAAGACTGTTCTATCTACGGGGAGCTTTCA CTTCCCAATATGCTCTACAAAAGGTGGTGATATTGTTTTACATTCTGGAACAAAAGTGAAAAAGTATAGTGATGAAGGAG TAGAACAAGAAGAACAACTAGAGTATCCGAACCATTGTGGTTTACTAGATGCATCAGTGCCCATATATACAGAGTCAATG CTTTCACTCCCTGATGTTAGCGACTGAAATCTCCACAAGAGCTTCGATTTGTAAGTAAGCTCCTCAACTTTCACTTTCAA TTTGTTAGAAACACATTTATTTCCCTTTTAATATGCCTTCTATTATAGTTGTAATGTTTGTGGAGTTATAGTTCTAGTCG TTAAATATCTGGAGATTCATCCATGTAGTAGGGAGTTTTTTAATGGCTTTTAGAGGCAACTTTGGACTAACAATCCTAAC CACAAAGACTCTGATAGTTGCTGTTTTGGTTTGGATTCTAACTTTGTGGAACCTTACTATGCTGGATGTAGTGAACTCCT TTTCAAAGATGGATAGACTAATAGTTTCATATAGGTAACAACCATGGCAATATAATGACACAAAACCTATCATTGATTAC AATTCTAAGATGACAAGAATAGGATTAGGCTCACTCGAAAATGAAAGTAGGAAAATGGGTGATTTTATACCTATTGTGAT TTTGGTGGAGGGATAGGAGATCCTCTGCAATGAAATTCTAAAACTGAGTTGTTGGAAGCTGTACTGAAAAACCTTAATTA TGGTTGTGGCTTTCGTTATGCTTTCAATTCATTCATTCATTACTACCCACAATGTGAAGAAAGATCCATTTATTATTTGA AAACAAACATATAGACATTTTAAATAGGTTTCTTTTACTAGAACAATGTGTGGAAATGATGTACAAAAACAGTATTTAGA CTTTTAATTCTTAATATCAAGTTAAGTTAAGGAATAATTGATCATGAGATGGATTGTCACGAAACTTCTGTAATTCAGAA AAATCAATTTGCTACAAGTCCATGTTCATTTTACTATCTTAAACAGCTGCATATATCATGATGTCATGATGAGGCTGCTA GATGGCAAAGTAATCTGCAGTGGTAGAAGAAGAATAAATTCAAGGGCATGTAATTTGATCCATTTTTGTGAGGCTCATCT AGGAAATAGTTCATATCACAACTAAGGGCATATTTGAATAAGAATCTCAAAAGGGTTACAAAATTATGGTTTGATCTCTT ACTTTGGTTTCTCGTAATAGCACTTTGACAGATCTTAATATTGATTAGTTGGAAATGAATTGGTATCAAATGTTGTTTCA TATTGTTGATAGTGATGGACTTTTAATCTGCTATGTATTTTAAGCTTTAATCTAATGAGAGATTTTTTAATTATAAGTAT ATGAAATGTTATGGTACTTATGATCTGAGTTTTTGTTATTGATTTTGACTTTTGAGCAGCAATTAGTGGGTCTGGTAGCA TCATTCACGTATGTTGGTGAAGTGATCAATGAAAAATTGGGTCAAACAGAAGCTGAAATCCTTCATTGAGGTCCATGGAG AAGAAAGGAAGCCATGGGGAGAGTCCATTAGGATCTTGACTACAAGGAGCGAAGACCCAGTTAATTTATATGAAGGATTA CGAGCCCTATGGAGGTTTTATTTCAATTAATCAATTGATTTCAAATCATTGGAACAAATGTTTTATTTGCAATTTAATCT CTACAAATAATAGCTCGGTTAATTTATTTGTAATCAGAGTTTTTTTCTACATTCTCATTATATTTTGGATTAATGGTATA TTAAACTATTTGTGTGACAACTTTTTTTAATTGTTAGAACATATATTTATATCAACTCACATATTCAATTCTTGCATACT ATACTTTCGTATACCTCACGTTGTATGTTAAAAAAGTTCACGGGGACGAACAATTTGCATGTATAAATGAGGATGTTAAG ATTTATAGTTGACAAACTTTTAAGTAAGGGGTAACATACGCACAGTCTTGGATTATCCGGAGTTTAATTGCATGTTTCAA TTTAAATGGGGAGGAACATTTTTTGTTTTAACATTTTAACAATGACAATGTAATGACACAAAACCTATCATTGATTATCA AGTAAAGTTAAGGAATTATTGATAATGAGATGGATTGCCACGAAACTTACTGTTATTCAGAAAAATCAATTTGTCAAAAG TCCATGTTCATTTTACTATCTAAAACAACTGCATATATCATGGGGTCATGATGAGGTCGCTAGATAGCAAAGTAATTTGC AGTGTAAGTATTTGGCTATACTTTTAGGCTTGACTTTTCCTACATCTTCTATTTTTATTTTTATTTTTGTATATCTTTTT TCACGGCCTACTAAATATAATGTTGGAACATATTTAAGCATTTAATTGAATTTAAGAGTATTAAATTATCCTTAACCAGT GTCCTTAGGGCACTCATTAGCAGGATTGTTTCTATAAGTTTGGTTCCTATATTTGTATTGTCCTATGCCTGTATTTATGG ATCATAGATATATGTGTCTTGTAATATTTGCTGATTGGGAGCCATTCTTCACTGTAATAAGAGTTGGTATTCTTCTCCAA TGGCCTACCTTTTATTTCTCACACCAAAACATCCCTCCCTTGTTTTGCAGCATACACTGAAGATACTGAGTGTGTTGGGC TTGCTCGGCTTGGAAGCGAAGATCATATGATAGTAGTTGGAACAATGAAGCAGTTGCAGTTGGTTGACTTTGGAGCACCT TTGCATTGCCTTGTCATAACAGGGAAGACCCATCCCTTGGGAACAGAAATGCTGGGTTTTAACAGATGCAGGACTTGGTC ATTGAGACTAAAGGACTACTTTAAGTCATAAAAGACTTTTTTTCTTTGTGTTGAAGGAGGGGATTCAGATTGGACACCCC ATCACAAAATCTCACACCACCATTTAGATCTCGGAGCAAGATGCGAAATCTTGTGCTAGAGTTGCCAAATCCAACTCTCT TGAATGAGTCTTTATCTTTTGTGAAACTTTTTGCTTGTGAGCTAGAGGCGGCTAAAGTTTTTTTTTCCCGAAATAATCCC ATCATCGAATTAAGAAGGCATATAGGCCACAATGTCAAGATCTACCAAGTTCTGAGCCACTTCTGGAACCTCCTCAACCC AAACTTGACAACCAAGGTTAGGAGCGTATCTTACAACCAAGGCTAATTGTATGACCCTTACATTTATCTAGAAGGAAGTA ACTTACATATCTTTTATACTAACACTGTAGAAACTCAACAAATGAGAACATGTTGCTCATAAACTCTGATTCTTGTATAG TTGTATTTCTAAGTACGTACTATTGAATCTCCCTACTGCGTTATTTGAAAGGTTCAAACTATTTCTCACACCATTTTCTA GCTATTATGCCATGAACTCTCTTTTCTAAATTAAAATGCAGTTAAATCTCCC
CDS sequence (LotjaGi1g1v0403400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAGTTTCCAAGGTTTTGCAAAATTATTATTCACCTACTCAACTGCCAAAGTAGAATCACTTTCAGTCACAATATT TCTAAGGCCCACGCTTACCCCTCCGATGGCCTCCCCGAGTTCAGCCCGTGCCTGCCTCTCAGTTAGCGACGCGCCGCCTT ACTCTGTCCGTTCATCCATGTCCTCTGACGGTGCGAGTCCGCCGGAAGCCGCGTCTGTGTCTACCATCGAGATTCAGATT CAAACACTGCATATTGACATGGATCGAGATTTGATAATTGAAATCCTTTTGAGGTTACCGGTGAAGTCTATTGTACGATT CAAGGCTGTGTGCAAGTTATGGAGATCTCTCATATCCGATCCCCTCTTTGCATCATTACATTTTCAACGTGCTGCTCCTT CACTCCTTTTCGCTGACTCTCATGCCATTCGAACCATTGACTTAGAGGGACCGCTTCAATCTCATCGTGTTTCTCAACCA ATCAATTGTCACTTTTTGTCTAATTATCATGATTTATCCTTGCCTCGTAACTGTATTTCGATTCACGGTTCGTGTAGAGG CTTTCTGCTAATCACCTGGATTAGTAATATTGGTTATGGGCACCCGTGGAATGATAGTCTCTACCTGTGGAATCCATCCA CACATGTCCACAAACCAATACCATCATCTCCTGTTGTTGACACCAATGTTTTAAGTCATCTATTTGGATTTGGTTACGAT TCCTCGACAGATGACTACTTGGTGGTTCGAGTGCCCGTTACGGACGGTAACCAACCTACTCATTTACCAGATGTGCAGTT TTTCTCATTGAGAGCTAATATGTGGAAATATACCGAGGGTGTTGATTTGCCTCCCTTGACCACTATTGACCTTTGTCATG GATTGCTCTTTAACGAGGCTATTCACTGGGCGGTTAGTAACTGGGTCGATGGTGTTACGAACATGTTTATTATTGCCTTT GATTTAATGGAAAAGAGACTCTTAGAGATACCCATGCCTCATGGTCTTCTTTTCCCTGGTTTTTCTTTGTGGGTGCATGG AAGATTTTTAAGTCTATCAATTTTGCAGAGAGATGGTACATGTGAAATATGGGTTATGAAGAAATACAAAGTACTGACAT CTTGGACCAAGACTGTTCTATCTACGGGGAGCTTTCACTTCCCAATATGCTCTACAAAAGGTGGTGATATTGTTTTACAT TCTGGAACAAAAGTGAAAAAGTATAGTGATGAAGGAGTAGAACAAGAAGAACAACTAGAGTATCCGAACCATTGTGGTTT ACTAGATGCATCAGTGCCCATATATACAGAGTCAATGCTTTCACTCCCTGATGTTAGCGACTGA
Protein sequence (LotjaGi1g1v0403400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKSFQGFAKLLFTYSTAKVESLSVTIFLRPTLTPPMASPSSARACLSVSDAPPYSVRSSMSSDGASPPEAASVSTIEIQI QTLHIDMDRDLIIEILLRLPVKSIVRFKAVCKLWRSLISDPLFASLHFQRAAPSLLFADSHAIRTIDLEGPLQSHRVSQP INCHFLSNYHDLSLPRNCISIHGSCRGFLLITWISNIGYGHPWNDSLYLWNPSTHVHKPIPSSPVVDTNVLSHLFGFGYD SSTDDYLVVRVPVTDGNQPTHLPDVQFFSLRANMWKYTEGVDLPPLTTIDLCHGLLFNEAIHWAVSNWVDGVTNMFIIAF DLMEKRLLEIPMPHGLLFPGFSLWVHGRFLSLSILQRDGTCEIWVMKKYKVLTSWTKTVLSTGSFHFPICSTKGGDIVLH SGTKVKKYSDEGVEQEEQLEYPNHCGLLDASVPIYTESMLSLPDVSD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 1 | 17 | 17 | - | – | |
| Phobius | 4 | 12 | 9 | - | – | |
| Phobius | 13 | 17 | 5 | - | – | |
| Phobius | 18 | 447 | 430 | - | – | |
| PANTHER | 83 | 440 | 358 | 8.4E-81 | – | |
| PANTHER | 83 | 440 | 358 | 8.4E-81 | – | |
| Gene3D | 86 | 123 | 38 | 4.9E-8 | – | |
| SMART | 87 | 127 | 41 | 4.3E-5 | ||
| SUPERFAMILY | 87 | 142 | 56 | 4.97E-14 | ||
| Pfam | 88 | 122 | 35 | 4.0E-7 | ||
| TIGRFAM | 194 | 379 | 186 | 4.1E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0403400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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