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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0403400 |
| Transcript ID | LotjaGi1g1v0403400.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; TAIR: AT4G28940.1 Phosphorylase superfamily protein; Swiss-Prot: sp|Q07469|BSPA_POPDE Bark storage protein A; TrEMBL-Plants: tr|A0A0B2QEI9|A0A0B2QEI9_GLYSO Bark storage protein A; Found in the gene: LotjaGi1g1v0403400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:89240585..89247756) extracted from Lotus japonicus Gifu genome v1.2.
CTTTTTTTGTATAAATTCCAACCAGCAATAGGTCCTCCATTTCTCAAGTCCCCACCTCCCTCCCTCTCTCCCCCTTCCTC TCCCTCTCTGTTGGGCGTGTTGTGTGTTTGGGTGGATAAAGATGGCAGGTGGTAGGAGAATCTTGTCCATGTTTCTTGTG GCATTTATGTGGATTAATGCCCAATATGCATTTGTAAGTTGTACTTTGACACCACAAGTGCAAAGAAAAATTGCTAGAGC CAATCAAAAGGGACCTTATCTTGGTCTGATCATACCAAATACTTTTGAACTAGACCCTCTTCTTCAGAATTCAGACTACA CTCCAAGTAAACTCACCATAGACTTTGCTGGTAAGTGCCATGTAATTTCACTATATTATTAATACACTTATGATTATAAT TATGATGTTTAATGTATATGTCTTTTGGTACGAAAAACACTATTACATCAATTATTGAAGGAAGGAGATTTCGATTTGGA GCCATTGGCCACAAGCCTGTTATACTGGTCATGACAGGAATGGGCATGGTACACTTTTCTAATTTTCTCATTTTAGGCTA TGATTAGACTCGTTAGTGCAAACACATTTTAGTACTCTTGTTGTACACAATCTTTGGATTCACTTTTAATCTTTTCAGAA TCACTTCTATTTTCATAAATTTATAGTTGAGGGTTATGAATTAATGATTGGAATATTTTTGGAAACATAAAGATAAATGC AGGTGTAACTACTCAGCTTCTATTAAGCTTATTCACAGTTGAAGGAGTGGTGCACTACGGTGTTGCTGGAAATGCAAACC CATCCTTGCATATTGGAGATGTAGCCATTCCTCAATACTGGGCTCATTTAGCACTTTGGAGTTGGCAGGTATATATATTA CCAAAACTCTAATAATATTTTTATTGCTCAATTACACTTTGTGTCCTTCATCTATCACGATTGTACAATTTGGATCGCTG ATGTTTACAACAGACGATTTTGGTTCTGTAATTTTTTTGACTGGTTATTTGTATTGTGCAGAGGTATGGGCAAGGGCCTA ATGATTCGTTACCCTTTGACTTCACAAAGGAAGTAGGATACTTAGAATTTGCCAATTACACCTCAAACTCATCTTCAAGT GTTGACAGTGATAACCAGCTCAACAATATCTGGTACGAACCAGAGGAAGTTTTTCCAGTTGATGGCATTCCAGAAGAGAC CAAACATGCTCTTTGGGTCCCTGTAGATTCCAAGTACTACCACATTGCTCAAAAACTCAAGGCAAGTTAGAGCAACTTTA CCATCTACTCATAAATCATATTTTTACTATTAATATTTAGTATACATTGTTTATAATTTATATCTTATGTGCTAAAATTA ATTTACAAGAATTTTGTTTTTGAAACTTTTGAACAAGACTTTTCTTGATGGATGGTACATATATCATATATCATTTAAAT TATTCTGATATTTAGTGAAACCCAAAAAGATTTGAAGTCATGATTTAGCAAGATTGTAGTGTTAATTACTCAATTAATCC GATACTTTTATGGTATACACATGTGGTTGATTAAGTTTTGTAATGTATGTTCAGGGCTTGAAGCTAAAGGCGTGCATAAA CTCAACGACATGCTTGTCCACTATACCAAAGGTGGAACTTGTTGATAGAGGAACAAGTGCGAGCATCTACCTAGACAACG CAGCGTACCGAACCTTCCTCTACAACAAATTCAATGTGAGCCCAGTGGACATGGAAAGTGCATCAGTGGCTCTTATATGT TTGCAACAAAGAGTGCCATTCATTGTTTTCAGGGCTCTCTCCGACTTGGCCGGTGGCGGCTCCGCCCAGTCTAATGAGGC CGATACTTTCGCATCACTCGCCGCCACTAACTCTGTCACAGTGGTTGTTGAGTTTGTTAAGCTCTTGTCACTCCACCGCA AGAGGTGGAACATGTTATAGTAAGCTATCATAAATTAATTTTTTTTTTCTATTTAAATAATGAGTGTAAATTATTATTTA AACTCATTATATAAGAATCAAATGTGAAACTTTTATCAAACCGGAAACAATCACTCACTTACACTTTCAAAAAAAAATGA GTGATTGTTTCCGGTTTGATAAAAGTTTCACATTTGATTCTTATATATGAAAAACGTTTCAAGGACAGCTAACCCTACAA GGATATGAATGTTTCCATGACTAGAAATACTTTTTTAAATTACAATAAAAGATAGCAGTTGTTTGAAATATAAATAAGTT ACACTTGAAAATGCCACTTTGAGTATGCCTGGGAAAAACTGACTAACTGATAAATTAGTTGTAACTATTTTTTTTTAAGG CTGAAAGGACATATTGAAGATTAGTAAGTTCTTGAGTACACTTCACTCAAGTAGGCAATATAAGAAAGGAAATTAATCTT TGTCAATTACAGCTCATAGCACATTTGACCTGATGTGCACTTGCTTTGGCAAGAAGTCTGCAAATTGATTCCTTAACCTC TTGAGCATAATGAAGAGTTTCCAAGGTTTTGCAAAATTATTATTCACCTACTCAACTGCCAAAGTAGAATCACTTTCAGT CACAATATTTCTAAGGCCCACGCTTACCCCTCCGATGGCCTCCCCGAGTTCAGCCCGTGCCTGCCTCTCAGTTAGCGACG CGCCGCCTTACTCTGTCCGTTCATCCATGTCCTCTGACGGTGCGAGTCCGCCGGAAGCCGCGTCTGTGTCTACCATCGAG GTAAATCATTTGATCGATCACAGTTGTAATTTGTAAACCCTAAACCCAAACAACAATTGCTATTGCTACTGTATCTATCT ATCAATCTCACTTTGTGAATTCAATTCAATTCAGATTCAGATTCAAACACTGCATATTGACATGGATCGAGATTTGATAA TTGAAATCCTTTTGAGGTTACCGGTGAAGTCTATTGTACGATTCAAGGCTGTGTGCAAGTTATGGAGATCTCTCATATCC GATCCCCTCTTTGCATCATTACATTTTCAACGTGCTGCTCCTTCACTCCTTTTCGCTGACTCTCATGCCATTCGAACCAT TGACTTAGAGGGACCGCTTCAATCTCATCGTGTTTCTCAACCAATCAATTGTCACTTTTTGTCTAATTATCATGATTTAT CCTTGCCTCGTAACTGTATTTCGATTCACGGTTCGTGTAGAGGCTTTCTGCTAATCACCTGGATTAGTAATATTGGTTAT GGGCACCCGTGGAATGATAGTCTCTACCTGTGGAATCCATCCACACATGTCCACAAACCAATACCATCATCTCCTGTTGT TGACACCAATGTTTTAAGTCATCTATTTGGATTTGGTTACGATTCCTCGACAGATGACTACTTGGTGGTTCGAGTGCCCG TTACGGACGGTAACCAACCTACTCATTTACCAGATGTGCAGTTTTTCTCATTGAGAGCTAATATGTGGAAATATACCGAG GGTGTTGATTTGCCTCCCTTGACCACTATTGACCTTTGTCATGGATTGCTCTTTAACGAGGCTATTCACTGGGCGGTTAG TAACTGGGTCGATGGTGTTACGAACATGTTTATTATTGCCTTTGATTTAATGGAAAAGAGACTCTTAGAGATACCCATGC CTCATGGTCTTCTTTTCCCTGGTTTTTCTTTGTGGGTGCATGGAAGATTTTTAAGTCTATCAATTTTGCAGAGAGATGGT ACATGTGAAATATGGGTTATGAAGAAATACAAAGTACTGACATCTTGGACCAAGACTGTTCTATCTACGGGGAGCTTTCA CTTCCCAATATGCTCTACAAAAGGTGGTGATATTGTTTTACATTCTGGAACAAAAGTGAAAAAGTATAGTGATGAAGGAG TAGAACAAGAAGAACAACTAGAGTATCCGAACCATTGTGGTTTACTAGATGCATCAGTGCCCATATATACAGAGTCAATG CTTTCACTCCCTGATGTTAGCGACTGAAATCTCCACAAGAGCTTCGATTTGTAAGTAAGCTCCTCAACTTTCACTTTCAA TTTGTTAGAAACACATTTATTTCCCTTTTAATATGCCTTCTATTATAGTTGTAATGTTTGTGGAGTTATAGTTCTAGTCG TTAAATATCTGGAGATTCATCCATGTAGTAGGGAGTTTTTTAATGGCTTTTAGAGGCAACTTTGGACTAACAATCCTAAC CACAAAGACTCTGATAGTTGCTGTTTTGGTTTGGATTCTAACTTTGTGGAACCTTACTATGCTGGATGTAGTGAACTCCT TTTCAAAGATGGATAGACTAATAGTTTCATATAGGTAACAACCATGGCAATATAATGACACAAAACCTATCATTGATTAC AATTCTAAGATGACAAGAATAGGATTAGGCTCACTCGAAAATGAAAGTAGGAAAATGGGTGATTTTATACCTATTGTGAT TTTGGTGGAGGGATAGGAGATCCTCTGCAATGAAATTCTAAAACTGAGTTGTTGGAAGCTGTACTGAAAAACCTTAATTA TGGTTGTGGCTTTCGTTATGCTTTCAATTCATTCATTCATTACTACCCACAATGTGAAGAAAGATCCATTTATTATTTGA AAACAAACATATAGACATTTTAAATAGGTTTCTTTTACTAGAACAATGTGTGGAAATGATGTACAAAAACAGTATTTAGA CTTTTAATTCTTAATATCAAGTTAAGTTAAGGAATAATTGATCATGAGATGGATTGTCACGAAACTTCTGTAATTCAGAA AAATCAATTTGCTACAAGTCCATGTTCATTTTACTATCTTAAACAGCTGCATATATCATGATGTCATGATGAGGCTGCTA GATGGCAAAGTAATCTGCAGTGGTAGAAGAAGAATAAATTCAAGGGCATGTAATTTGATCCATTTTTGTGAGGCTCATCT AGGAAATAGTTCATATCACAACTAAGGGCATATTTGAATAAGAATCTCAAAAGGGTTACAAAATTATGGTTTGATCTCTT ACTTTGGTTTCTCGTAATAGCACTTTGACAGATCTTAATATTGATTAGTTGGAAATGAATTGGTATCAAATGTTGTTTCA TATTGTTGATAGTGATGGACTTTTAATCTGCTATGTATTTTAAGCTTTAATCTAATGAGAGATTTTTTAATTATAAGTAT ATGAAATGTTATGGTACTTATGATCTGAGTTTTTGTTATTGATTTTGACTTTTGAGCAGCAATTAGTGGGTCTGGTAGCA TCATTCACGTATGTTGGTGAAGTGATCAATGAAAAATTGGGTCAAACAGAAGCTGAAATCCTTCATTGAGGTCCATGGAG AAGAAAGGAAGCCATGGGGAGAGTCCATTAGGATCTTGACTACAAGGAGCGAAGACCCAGTTAATTTATATGAAGGATTA CGAGCCCTATGGAGGTTTTATTTCAATTAATCAATTGATTTCAAATCATTGGAACAAATGTTTTATTTGCAATTTAATCT CTACAAATAATAGCTCGGTTAATTTATTTGTAATCAGAGTTTTTTTCTACATTCTCATTATATTTTGGATTAATGGTATA TTAAACTATTTGTGTGACAACTTTTTTTAATTGTTAGAACATATATTTATATCAACTCACATATTCAATTCTTGCATACT ATACTTTCGTATACCTCACGTTGTATGTTAAAAAAGTTCACGGGGACGAACAATTTGCATGTATAAATGAGGATGTTAAG ATTTATAGTTGACAAACTTTTAAGTAAGGGGTAACATACGCACAGTCTTGGATTATCCGGAGTTTAATTGCATGTTTCAA TTTAAATGGGGAGGAACATTTTTTGTTTTAACATTTTAACAATGACAATGTAATGACACAAAACCTATCATTGATTATCA AGTAAAGTTAAGGAATTATTGATAATGAGATGGATTGCCACGAAACTTACTGTTATTCAGAAAAATCAATTTGTCAAAAG TCCATGTTCATTTTACTATCTAAAACAACTGCATATATCATGGGGTCATGATGAGGTCGCTAGATAGCAAAGTAATTTGC AGTGTAAGTATTTGGCTATACTTTTAGGCTTGACTTTTCCTACATCTTCTATTTTTATTTTTATTTTTGTATATCTTTTT TCACGGCCTACTAAATATAATGTTGGAACATATTTAAGCATTTAATTGAATTTAAGAGTATTAAATTATCCTTAACCAGT GTCCTTAGGGCACTCATTAGCAGGATTGTTTCTATAAGTTTGGTTCCTATATTTGTATTGTCCTATGCCTGTATTTATGG ATCATAGATATATGTGTCTTGTAATATTTGCTGATTGGGAGCCATTCTTCACTGTAATAAGAGTTGGTATTCTTCTCCAA TGGCCTACCTTTTATTTCTCACACCAAAACATCCCTCCCTTGTTTTGCAGCATACACTGAAGATACTGAGTGTGTTGGGC TTGCTCGGCTTGGAAGCGAAGATCATATGATAGTAGTTGGAACAATGAAGCAGTTGCAGTTGGTTGACTTTGGAGCACCT TTGCATTGCCTTGTCATAACAGGGAAGACCCATCCCTTGGGAACAGAAATGCTGGGTTTTAACAGATGCAGGACTTGGTC ATTGAGACTAAAGGACTACTTTAAGTCATAAAAGACTTTTTTTCTTTGTGTTGAAGGAGGGGATTCAGATTGGACACCCC ATCACAAAATCTCACACCACCATTTAGATCTCGGAGCAAGATGCGAAATCTTGTGCTAGAGTTGCCAAATCCAACTCTCT TGAATGAGTCTTTATCTTTTGTGAAACTTTTTGCTTGTGAGCTAGAGGCGGCTAAAGTTTTTTTTTCCCGAAATAATCCC ATCATCGAATTAAGAAGGCATATAGGCCACAATGTCAAGATCTACCAAGTTCTGAGCCACTTCTGGAACCTCCTCAACCC AAACTTGACAACCAAGGTTAGGAGCGTATCTTACAACCAAGGCTAATTGTATGACCCTTACATTTATCTAGAAGGAAGTA ACTTACATATCTTTTATACTAACACTGTAGAAACTCAACAAATGAGAACATGTTGCTCATAAACTCTGATTCTTGTATAG TTGTATTTCTAAGTACGTACTATTGAATCTCCCTACTGCGTTATTTGAAAGGTTCAAACTATTTCTCACACCATTTTCTA GCTATTATGCCATGAACTCTCTTTTCTAAATTAAAATGCAGTTAAATCTCCC
CDS sequence (LotjaGi1g1v0403400.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGGTGGTAGGAGAATCTTGTCCATGTTTCTTGTGGCATTTATGTGGATTAATGCCCAATATGCATTTGTAAGTTG TACTTTGACACCACAAGTGCAAAGAAAAATTGCTAGAGCCAATCAAAAGGGACCTTATCTTGGTCTGATCATACCAAATA CTTTTGAACTAGACCCTCTTCTTCAGAATTCAGACTACACTCCAAGTAAACTCACCATAGACTTTGCTGGAAGGAGATTT CGATTTGGAGCCATTGGCCACAAGCCTGTTATACTGGTCATGACAGGAATGGGCATGATAAATGCAGGTGTAACTACTCA GCTTCTATTAAGCTTATTCACAGTTGAAGGAGTGGTGCACTACGGTGTTGCTGGAAATGCAAACCCATCCTTGCATATTG GAGATGTAGCCATTCCTCAATACTGGGCTCATTTAGCACTTTGGAGTTGGCAGAGGTATGGGCAAGGGCCTAATGATTCG TTACCCTTTGACTTCACAAAGGAAGTAGGATACTTAGAATTTGCCAATTACACCTCAAACTCATCTTCAAGTGTTGACAG TGATAACCAGCTCAACAATATCTGGTACGAACCAGAGGAAGTTTTTCCAGTTGATGGCATTCCAGAAGAGACCAAACATG CTCTTTGGGTCCCTGTAGATTCCAAGTACTACCACATTGCTCAAAAACTCAAGGCAAGTTAG
Protein sequence (LotjaGi1g1v0403400.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGGRRILSMFLVAFMWINAQYAFVSCTLTPQVQRKIARANQKGPYLGLIIPNTFELDPLLQNSDYTPSKLTIDFAGRRF RFGAIGHKPVILVMTGMGMINAGVTTQLLLSLFTVEGVVHYGVAGNANPSLHIGDVAIPQYWAHLALWSWQRYGQGPNDS LPFDFTKEVGYLEFANYTSNSSSSVDSDNQLNNIWYEPEEVFPVDGIPEETKHALWVPVDSKYYHIAQKLKAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 23 | 23 | - | – | |
| ProSiteProfiles | 1 | 27 | 27 | 6.0 | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| PANTHER | 3 | 231 | 229 | 1.3E-109 | – | |
| PANTHER | 3 | 231 | 229 | 1.3E-109 | – | |
| Phobius | 7 | 18 | 12 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 19 | 23 | 5 | - | – | |
| Phobius | 24 | 233 | 210 | - | – | |
| CDD | 47 | 144 | 98 | 3.31711E-24 | – | |
| Pfam | 47 | 228 | 182 | 4.8E-23 | ||
| SUPERFAMILY | 48 | 162 | 115 | 3.01E-20 | ||
| Gene3D | 53 | 200 | 148 | 3.5E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | Nucleoside metabolic process | The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (a ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleoside), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine). |
Expression pattern of LotjaGi1g1v0403400.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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