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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0403800 |
| Transcript ID | LotjaGi1g1v0403800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; TAIR: AT4G28940.1 Phosphorylase superfamily protein; Swiss-Prot: sp|Q07469|BSPA_POPDE Bark storage protein A; TrEMBL-Plants: tr|I1K9C4|I1K9C4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0403800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:89258558..89261189) extracted from Lotus japonicus Gifu genome v1.2.
TTTTTTTGTATAAATTCCAACCAGCAATAGGTCCTCCATTTCTCAAGTCCCCACCTCCCTCCCTCTCTCCCCCTTCCTCT CCCTCTCTGTTGGGCGTGTTGTGTGTTTGGGTGGATAAAGATGGCAGGTGGTAGGAGAATCTTGTCCATGTTTCTTGTGG CATTTATGTGGATTAATGCCCAATATGCATTTGTAAGTTGTACTTTGACACCACAAGTGCAAAGAAAAATTGCTAGAGCC AATCAAAAGGGACCTTATCTTGGTCTGATCATACCAAATACTTTTGAACTAGACCCTCTTCTTCAGAATTCAGACTACAC TCCAAGTAAACTCACCATAGACTTTGCTGGTAAGTGCCATGTAATTTCACTATATTATTAATACACTTATGATTATAATT ATGATGTTTAATGTATATGTCTTTTGGTACGAAAAACACTATTACATCAATTATTGAAGGAAGGAGATTTCGATTTGGAG CCATTGGCCACAAGCCTGTTATACTGGTCATGACAGGAATGGGCATGGTACACTTTTCTAATTTTCTCATTTTAGGCTAT GATTAGACTCGTTAGTGCAAACACATTTTAGTACTCTTGTTGTACACAATCTTTGGATTCACTTTTAATCTTTTCAGAAT CACTTCTATTTTCATAAATTTATAGTTGAGGGTTATGAATTAATGATTGGAATATTTTTGGAAACATAAAGATAAATGCA GGTGTAACTACTCAGCTTCTATTAAGCTTATTCACAGTTGAAGGAGTGGTGCACTACGGTGTTGCTGGAAATGCAAACCC ATCCTTGCATATTGGAGATGTAGCCATTCCTCAATACTGGGCTCATTTAGCACTTTGGAGTTGGCAGGTATATATATTAC CAAAACTCTAATAATATTTTTATTGCTCAATTACACTTTGTGTCCTTCATCTATCACGATTGTACAATTTGGATCGCTGA TGTTTACAACAGACGATTTTGGTTCTGTAATTTTTTTGACTGGTTATTTGTATTGTGCAGAGGTATGGGCAAGGGCCTAA TGATTCGTTACCCTTTGACTTCACAAAGGAAGTAGGATACTTAGAATTTGCCAATTACACCTCAAACTCATCTTCAAGTG TTGACAGTGATAACCAGCTCAACAATATCTGGTACGAACCAGAGGAAGTTTTTCCAGTTGATGGCATTCCAGAAGAGACC AAACATGCTCTTTGGGTCCCTGTAGATTCCAAGTACTACCACATTGCTCAAAAACTCAAGGCAAGTTAGAGCAACTTTAC CATCTACTCATAAATCATATTTTTACTATTAATATTTAGTATACATTGTTTATAATTTATATCTTATGTGCTAAAATTAA TTTACAAGAATTTTGTTTTTGAAACTTTTGAACAAGACTTTTCTTGATGGATGGTACATATATCATATATCATTTAAATT ATTCTGATATTTAGTGAAACCCAAAAAGATTTGAAGTCATGATTTAGCAAGATTGTAGTGTTAATTACTCAATTAATCCG ATACTTTTATGGTATACACATGTGGTTGATTAAGTTTTGTAATGTATGTTCAGGGCTTGAAGCTAAAGGCGTGCATAAAC TCAACGACATGCTTGTCCACTATACCAAAGGTGGAACTTGTTGATAGAGGAACAAGTGCGAGCATCTACCTAGACAACGC AGCGTACCGAACCTTCCTCTACAACAAATTCAATGTGAGCCCAGTGGACATGGAAAGTGCATCAGTGGCTCTTATATGTT TGCAACAAAGAGTGCCATTCATTGTTTTCAGGGCTCTCTCCGACTTGGCCGGTGGCGGCTCCGCCCAGTCTAATGAGGCC GATACTTTCGCATCACTCGCCGCCACTAACTCTGTCACAGTGGTTGTTGAGTTTGTTAAGCTCTTGTCACTCCACCGCAA GAGGTGGAACATGTTATAGTAAGCTATCATAAATTAATTTTTTTTTTCTATTTAAATAATGAGTGTAAATTATTATTTAA ACTCATTATATAAGAATCAAATGTGAAACTTTTATCAAACCGGAAACAATCACTCACTTACACTTTCAAAAAAAAATGAG TGATTGTTTCCGGTTTGATAAAAGTTTCACATTTGATTCTTATATATGAAAAACGTTTCAAGGACAGCTAACCCTACAAG GATATGAATGTTTCCATGACTAGAAATACTTTTTTAAATTACAATAAAAGATAGCAGTTGTTTGAAATATAAATAAGTTA CACTTGAAAATGCCACTTTGAGTATGCCTGGGAAAAACTGACTAACTGATAAATTAGTTGTAACTATTTTTTTTTAAGGC TGAAAGGACATATTGAAGATTAGTAAGTTCTTGAGTACACTTCACTCAAGTAGGCAATATAAGAAAGGAAATTAATCTTT GTCAATTACAGCTCATAGCACATTTGACCTGATGTGCACTTGCTTTGGCAAGAAGTCTGCAAATTGATTCCTTAACCTCT TGAGCATAATGAAGAGTTTCCAAGGTTTTGCAAAATTATTATTCACCTACTCAACTGCCAAAGTAGAATCACTTTCAGTC ACAATATTTCTAAGGCTAAATTAATGGAAGAAAAGGAGAGCATTTTGGATGGCGAAGATTTCAGCTTCATAA
CDS sequence (LotjaGi1g1v0403800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGGTGGTAGGAGAATCTTGTCCATGTTTCTTGTGGCATTTATGTGGATTAATGCCCAATATGCATTTGTAAGTTG TACTTTGACACCACAAGTGCAAAGAAAAATTGCTAGAGCCAATCAAAAGGGACCTTATCTTGGTCTGATCATACCAAATA CTTTTGAACTAGACCCTCTTCTTCAGAATTCAGACTACACTCCAAGTAAACTCACCATAGACTTTGCTGGAAGGAGATTT CGATTTGGAGCCATTGGCCACAAGCCTGTTATACTGGTCATGACAGGAATGGGCATGATAAATGCAGGTGTAACTACTCA GCTTCTATTAAGCTTATTCACAGTTGAAGGAGTGGTGCACTACGGTGTTGCTGGAAATGCAAACCCATCCTTGCATATTG GAGATGTAGCCATTCCTCAATACTGGGCTCATTTAGCACTTTGGAGTTGGCAGAGGTATGGGCAAGGGCCTAATGATTCG TTACCCTTTGACTTCACAAAGGAAGTAGGATACTTAGAATTTGCCAATTACACCTCAAACTCATCTTCAAGTGTTGACAG TGATAACCAGCTCAACAATATCTGGTACGAACCAGAGGAAGTTTTTCCAGTTGATGGCATTCCAGAAGAGACCAAACATG CTCTTTGGGTCCCTGTAGATTCCAAGTACTACCACATTGCTCAAAAACTCAAGGGCTTGAAGCTAAAGGCGTGCATAAAC TCAACGACATGCTTGTCCACTATACCAAAGGTGGAACTTGTTGATAGAGGAACAAGTGCGAGCATCTACCTAGACAACGC AGCGTACCGAACCTTCCTCTACAACAAATTCAATGTGAGCCCAGTGGACATGGAAAGTGCATCAGTGGCTCTTATATGTT TGCAACAAAGAGTGCCATTCATTGTTTTCAGGGCTCTCTCCGACTTGGCCGGTGGCGGCTCCGCCCAGTCTAATGAGGCC GATACTTTCGCATCACTCGCCGCCACTAACTCTGTCACAGTGGTTGTTGAGTTTGTTAAGCTCTTGTCACTCCACCGCAA GAGGTGGAACATGTTATAG
Protein sequence (LotjaGi1g1v0403800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGGRRILSMFLVAFMWINAQYAFVSCTLTPQVQRKIARANQKGPYLGLIIPNTFELDPLLQNSDYTPSKLTIDFAGRRF RFGAIGHKPVILVMTGMGMINAGVTTQLLLSLFTVEGVVHYGVAGNANPSLHIGDVAIPQYWAHLALWSWQRYGQGPNDS LPFDFTKEVGYLEFANYTSNSSSSVDSDNQLNNIWYEPEEVFPVDGIPEETKHALWVPVDSKYYHIAQKLKGLKLKACIN STTCLSTIPKVELVDRGTSASIYLDNAAYRTFLYNKFNVSPVDMESASVALICLQQRVPFIVFRALSDLAGGGSAQSNEA DTFASLAATNSVTVVVEFVKLLSLHRKRWNML
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | - | – | |
| ProSiteProfiles | 1 | 27 | 27 | 6.0 | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| PANTHER | 3 | 345 | 343 | 1.7E-179 | – | |
| PANTHER | 3 | 345 | 343 | 1.7E-179 | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 7 | 18 | 12 | - | – | |
| Phobius | 19 | 23 | 5 | - | – | |
| Phobius | 24 | 352 | 329 | - | – | |
| CDD | 47 | 338 | 292 | 2.49366E-43 | – | |
| Pfam | 47 | 339 | 293 | 1.9E-41 | ||
| SUPERFAMILY | 48 | 342 | 295 | 3.71E-36 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | Nucleoside metabolic process | The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (a ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleoside), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine). |
Expression pattern of LotjaGi1g1v0403800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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