Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0407000 |
| Transcript ID | LotjaGi1g1v0407000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; TAIR: AT4G28940.1 Phosphorylase superfamily protein; Swiss-Prot: sp|Q07469|BSPA_POPDE Bark storage protein A; TrEMBL-Plants: tr|I1K9C4|I1K9C4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0407000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:89661677..89664288) extracted from Lotus japonicus Gifu genome v1.2.
ATAAATTCCAACCAGCAATAGGTCCTCCATTTCTCAAGTCCCCACCTCCCTCCCTCTCTCCCTCTTCCTCTCCCTCTCTG TTGGGCGTGTTGTGTGTTTGGGTGGATAAAGATGGTAGGTGGTAGGAGAATCTTGTCCATGTTTCTTGTGGCATTTATGT GGATTAATGCCCAATATGCATTTGTAAGTTGTACTTTGACACCACAAGTGCAAAGAAAAATTGCTAGAGCCAATCAAAAG GGACCTTATCTTGGTTTGATCATACCAAATACTTTTGAACTAGACCCTCTTCTTCAGAATTCAGACTACACTCCAAGTAA ACTCACCATAGACTTTGCTGGTAAGTGCCCTGTAATTTGACTATATTATTAATACACTTATGATTATAATTATGATGTTT AATGTATATGTTTTTTGGTACGAAAAAAGCTATTACATCAATTATTGATACTTTCCATTTTTTACAATTTTTTAATGAAG GAAGGAGATTTCGATTTGGAGCCATTGGCCACAAGCCTGTTATACTGGTCATGACAGGAATGGGCATGGTACACTTTTCT AATTTTTTAATTTTAGGCTATGATTAGACTCGTTAGTACAAACGCATTTTAATACTCTTGTTGTGAGGAAACATTTCTTA TGGACTGTGATTAAAATTCGTTCTAGTTACACAAACTTTGTTGTACACAATCTTTGGATTCACTTTTAATCTTTTCAGAA TCACTTCTATTTTCATAAATTTATAGTTGGGGGTTATTAATTAATGATTGGAATATTTTTGGAAACATAAAGATAAATGC AGGTGTAACTACTCAGCTTCTATTAAGCTTTTTCACAGTTGAAGGAGTGGTGCACTACGGTGTTGCTGGAAATGCAAACA CATCCTTGCATATTGGAGATGTAGCCATTCCTCAATATTGGGCTCATTTAGCACTTTGGAGTTGGCAGGTATTTAGATTA CCAAAATTCTAATAGTATTTTTTTGCTCAATTGCACTTTGTGTCCATCTATCACGATTGTACAATTTGGATTGCTGAGGT TTACAACAGACGATTTTGGTTCTGTAGTTTTTTGACTGGTTATTTGTATTGTGCAGAGGTATGGGCAAGGGCCTAATGAT TCGTTACCCTTTGACTTCACAAAGGAAGTAGGATACTTAGAATTTGCCAATTTCACCTCAAACTCATCTTCAAGTGTTGA CAGTGATAACCTACTCAACAATATCTGGTACGAACCAGAAGAAGTTTTTCCAGTTGATGGCATTCCAGAAGAAACCAAAT ATGCTCTTTGGGTCCCTGTAGATTCCAAGTACTACCACATTGCTAAAAAACTCAAGGCAAGTTAGAGAAACTTTACCATC TACTCATAAATCATATTTTTACTATTAATATTTAGTATACATTGCTTATAATTTATATCTTATGTGCTAAAATTAATTTA CAATAACTTTTTTTTGAACTTTTGAACAAGACTTTTCTTGATGGATGGTACATATATCATTTAAATTATTCTGATATTTA GTAAGGTTATAACTTTGTCTTCTTCTGGAAATGAAATTGTTTGGTGCTCCTTGCCTCCGGTGGTGGTGTGTGGCTTTGAT TGGCTTAGCTTGTGAGATAAAGCAGCATTAAAACGACATGTTGTGCACCTGTAGATGATAATATAACGCTCCAGTCAGTG TGAGAGTAAGAGAGTGTCAAAGTTTTGCATAATGAACAAAGTGTTGTGTAAATGAACGACTATATCTGGGTCTATAAGCT CAGAGTCTATATTAGCTGTTTTTACAAGTCGTTGAGAAGCCTCATAAATAGTCTTCAGAGAGCAAGGTTGCACATGGGCC ACCTTGCTTATTTATTAATAGGGTTGTCGTGCGACCAATCAACCTTAGCTAGGATGAGATATTTCTTAATTAAGTCATCT AGTCCGTTCGTACAACACTCACTCATTTTTTGTGTCTTTGAACTAGTTGAGACATCATTGGGCCTTTTAGGCCAACTGAG ACACTTTGTCTTTTACTACTAGTGAAACCCAAAAAGATTTGAAGTCATGATTTAGCAAGATGGTGTTGTGTTAACTACTC AATTACTTTTATGGTATAAACATGTGGTTAATTAAGTTTTGTGATGTGTTCAGGGGTTGAAGCTAAAGGCGTGCATAAAC TCAACGACATGCTTGTCCACAATACCAAAGGTGGAACTTGTTGATAGAGGAACAAGTGCGAGCATCTACCTAGACAATGT AGCATACCGAACCTTCCTCTACAACAAATTCCATGTGAGCCCAGTGGACATGGAAAGTGCATCAGTGGCCCTTATATGTT TGCAACAAAGAGTACCATTCATTGTTTTCAGGGCTCTCTCCGACTTGGCCGGTGGCGGCTCTGCCCAGTCTAATGAAGCT GATACTTTCGCATCACTCGCTGCCACTAACTCTGTCAAGGTGGTTGCTGAGTTTGTTAAGCTCTTGTCACTCCACCGCAA GAGGTGGAACATGTTATAGCAAGTTATCATAAATTAATTTTTTTTCTGTTTAAATAATGAGTGATTGTTTCCGGTTTGAT AAAAGTTTCACATTTGATTATTATCTATGAAAATAGTTTCAAGGACAGCTAA
CDS sequence (LotjaGi1g1v0407000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTAGGTGGTAGGAGAATCTTGTCCATGTTTCTTGTGGCATTTATGTGGATTAATGCCCAATATGCATTTGTAAGTTG TACTTTGACACCACAAGTGCAAAGAAAAATTGCTAGAGCCAATCAAAAGGGACCTTATCTTGGTTTGATCATACCAAATA CTTTTGAACTAGACCCTCTTCTTCAGAATTCAGACTACACTCCAAGTAAACTCACCATAGACTTTGCTGGAAGGAGATTT CGATTTGGAGCCATTGGCCACAAGCCTGTTATACTGGTCATGACAGGAATGGGCATGATAAATGCAGGTGTAACTACTCA GCTTCTATTAAGCTTTTTCACAGTTGAAGGAGTGGTGCACTACGGTGTTGCTGGAAATGCAAACACATCCTTGCATATTG GAGATGTAGCCATTCCTCAATATTGGGCTCATTTAGCACTTTGGAGTTGGCAGAGGTATGGGCAAGGGCCTAATGATTCG TTACCCTTTGACTTCACAAAGGAAGTAGGATACTTAGAATTTGCCAATTTCACCTCAAACTCATCTTCAAGTGTTGACAG TGATAACCTACTCAACAATATCTGGTACGAACCAGAAGAAGTTTTTCCAGTTGATGGCATTCCAGAAGAAACCAAATATG CTCTTTGGGTCCCTGTAGATTCCAAGTACTACCACATTGCTAAAAAACTCAAGGGGTTGAAGCTAAAGGCGTGCATAAAC TCAACGACATGCTTGTCCACAATACCAAAGGTGGAACTTGTTGATAGAGGAACAAGTGCGAGCATCTACCTAGACAATGT AGCATACCGAACCTTCCTCTACAACAAATTCCATGTGAGCCCAGTGGACATGGAAAGTGCATCAGTGGCCCTTATATGTT TGCAACAAAGAGTACCATTCATTGTTTTCAGGGCTCTCTCCGACTTGGCCGGTGGCGGCTCTGCCCAGTCTAATGAAGCT GATACTTTCGCATCACTCGCTGCCACTAACTCTGTCAAGGTGGTTGCTGAGTTTGTTAAGCTCTTGTCACTCCACCGCAA GAGGTGGAACATGTTATAG
Protein sequence (LotjaGi1g1v0407000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVGGRRILSMFLVAFMWINAQYAFVSCTLTPQVQRKIARANQKGPYLGLIIPNTFELDPLLQNSDYTPSKLTIDFAGRRF RFGAIGHKPVILVMTGMGMINAGVTTQLLLSFFTVEGVVHYGVAGNANTSLHIGDVAIPQYWAHLALWSWQRYGQGPNDS LPFDFTKEVGYLEFANFTSNSSSSVDSDNLLNNIWYEPEEVFPVDGIPEETKYALWVPVDSKYYHIAKKLKGLKLKACIN STTCLSTIPKVELVDRGTSASIYLDNVAYRTFLYNKFHVSPVDMESASVALICLQQRVPFIVFRALSDLAGGGSAQSNEA DTFASLAATNSVKVVAEFVKLLSLHRKRWNML
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | - | – | |
| ProSiteProfiles | 1 | 27 | 27 | 6.0 | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| PANTHER | 4 | 345 | 342 | 6.3E-175 | – | |
| PANTHER | 4 | 345 | 342 | 6.3E-175 | – | |
| Phobius | 7 | 18 | 12 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 19 | 23 | 5 | - | – | |
| Phobius | 24 | 352 | 329 | - | – | |
| SUPERFAMILY | 39 | 342 | 304 | 3.29E-35 | ||
| CDD | 47 | 338 | 292 | 1.28975E-39 | – | |
| Pfam | 47 | 339 | 293 | 1.4E-38 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | Nucleoside metabolic process | The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (a ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleoside), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine). |
Expression pattern of LotjaGi1g1v0407000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…