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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0415200 |
| Transcript ID | LotjaGi1g1v0415200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Eukaryotic translation initiation factor 2 subunit alpha; TAIR: AT2G40290.1 Eukaryotic translation initiation factor 2 subunit 1; Swiss-Prot: sp|Q9SIZ2|IF2AH_ARATH Eukaryotic translation initiation factor 2 subunit alpha homolog; TrEMBL-Plants: tr|I3SIC1|I3SIC1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0415200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:90802809..90807849) extracted from Lotus japonicus Gifu genome v1.2.
AGAAAGCCCACTGTGACAAAGAAATTAGAAAAGCCCAAGCCTGCGTGGGAATCTATCATTGTCGAACACATACATTCAGA AAAACCCTCACTCACTGTCACCCCCTTCCTTCCTCGCAAACCCAATCAGAAACGCCGTCGTCTCCATTCTCCGGCGACTC AGTGAACGAAACCATGGCTCCGAATCTCGAGTGTCGCATGTACGAAACCAAGTACCCGGAGGTAGACATGGCGGTGATGA TTCAGGTCAAGAACATCGCCGATATGGGTGCATACGTCTCCCTGTTAGAGTACAACAACATCGAAGGGATGATCCTGTTC TCGGAGCTCTCCCGCCGTCGGATTCGGAGTGTCAGCAGTCTCATCAAGGTGGGTCGCATTGAGCCGGTGATGGTCCTCCG TGTTGACAAGGAGAAGGGTTACATCGATCTCAGTAAGCGTAGGGTTTCTGAAGAAGATATTCAGACTTGTGAGGAGAGGT ACAACAAGAGCAAGCTCGTTCACTCCATCATGCGCCATGTTGCTGAAACCCTAAACATTGATTTAGAGGTACATACATAC ATACCCTAGATATTTTTGCTTGTTTTTTCAATTTTTTGGTTGCTTGTGATTGTTAGGGTTGCAAAAAGCTTGATTTTTTT TAAGCAATTTAAGTTTCATCGTATTGGATTGATTGTGCTTGTTTTGATTCATTTTGCTTATTAGGGTTCATCCATCATTG AATTGACCATTGAGGTTTCCCCTTTATAATGCTTATGTTGTAGAATTGTATTGCCTATCAATTCTGTTAGAGAGTAAAGG ATAATAGAGAAACTCTTAGTTCTAACTTCTAACTAATATTGCACACACAAGTGTTTAGGGAAGAAGTCATAGAGCTATGT GTATAGTAGAGTTTAAAGTCATTCACATCCTTTTTGAGACCCCAAATTTGAGCTGAAAGTTTCACAATGAGAATCAGTAC AGCTAATTGAGCCAAGTCATTGAAAGTAAGCCGTAGATATCGGATGAAATCCAAAATAACATTTAAGGGTGTGGTTTGGA TATGGACAAAACTTTGAACAAATCTCAAATGTATCCCTTTTACCTGCACAGAAAAAAAAAATCAATCCAATAGTCAAACC AGCAAGTACACGCAACGATTATTGCTTAATTTGTTTTGAAAATGAGAAAGTTTTGGACTGACCAGGATGACTACTATTTT AGTAGTGTATCTTAATGGGAGGAAATTTTTAATTCTAGTTCAATTAATTCGGTGATAGTAAAAAGCTAATTCTGATTAAT ATATTTTCCGCCAATAGGTATGGCATACCAAAACAAGTTTCATATGGCCCTGTATTGGTTGAACAAGTACAAAGAAGTCT TATTACTATGATTAGTACTTATATATGTTTAGTTCAATTGATAGAGCTATAAGCAGGTTATTGATAATGGAGGCAGCATC TCAAAGAGTTCCTTAGTTGTATCTGCCAGCCCTTAGATCATTAATTGTTTATGTATCACATGTAGGATTAAATTCCTTTT GTGGGTTTTTCTGTTTTAGTTTATTGACCTAATTTGAGGTGGCTCTGTGCAGGAGCTGTATGTTCACATTGGATGGCCTT TATATCGCAAATACGGTCATGCTTTTGAGGTAAGCATTTGTTTTCTTCTAATTTTACTCTTTGATAGTTCTATGACTTTT TTGGTTGATACATAACCTTAATGGCATGCAGGCATTCAAAATAGTTGTGACTGATCCTGATTCTGTTTTGAATCTTCTAA CTCGTGAGGTTAAGGAAGTTGGCCCTGATGGGCAAGAGGTAAACATTGTCTTATCACTCATTAGAGAAATACGTGTGATA TGAATCTGGCTGATGTCTAAAGCTATGTTTTATTTTCTCTCATAGGTGACCAAGGTGGTACCTGCTGTATCTGAAGAAGT GAAGGATTCTCTTGTGAAGAATATCAGAAGGCGGATGACTCCCCAACCTTTGAAAATTAGGGCGGATATTGAAATGAAAT GTTTCCAATTTGATGGAGTTCTTCACATCAAGGTCATAAATGTTTCCATTCCTCTTTTATTTAGTATAAAGATAAAAAGT TCCCCTTTTCTTTCTCAGTGTCTACTGTGTATATCATGTGTTAGTTATTTATTTGCTATAGCTTATCTTCCTAAATCCTA AGAATTATGAGGTTTAATAATTATTTGGTCATGCAGGAGGCTATGCGTAAGGCTGAAGCTGCTGGAAATGATGACTGCCC TGTGAACATTAAACTTGTTGCGCCCCCACTTTACGTTCTTACCACACAGACCCTTGACAAGGTTAGTGCAGTGTTCTTGT ACGTTTTGATTGTGATAATTAGCTTTTTGAGCTGAATTGACTTCATAATTTGCCTTTACAGCCTTGTCATCGAGATTAGG GATTTTTGGTTGTATGAAGTTGTTTTTTTATGTTGGATTGTGGGGTGTTATGGATTTACATCTAGGTTAGCAGTTGTTAT TGCCTATTATGATTGCCAACTTAGCTATTTATCTAGTGACAGCCTAATGTGCATCAGTGCAGTTTTGATACTTGCAATTA TTGGCAATCTCTAATGTCTCATGTCTCATTATTATTGTTCATCTCTCATGCCTTCAATGCATGTAGATTTACTAATTTAC GTTAAATAGATCATTAAGTAACCTTGCTATTCAAAGTAATTTGCTTATTTTGTTATTGTTTTGACAGGAGCAAGGAATAT TGGTTCTCAACAATGCCATTGTTTCTTGCACTGAATCAATAGAGAAACACAAGGGTAAACTTGTGGTGAAGGAGGCAGCC AGAGCGGTGAGTTTCAACATCCTATTTATTTGTTTCTTTTATCCTCTATTTATTTCTGCTCATGTTCAATTTGACTATCT TTTGATGATGGAGAGTAGAACTTACCACTATTTTATTTTTGGATTTGAGAGTTTTGACACTGCATTGTGATTCAGGTGAG TGAGCGTGATGATAAAGTGATTGCGGAGTACATGGCTAAGCTACGCCAAGAGAATGAGGAGGTGAGCGGCGATGAAGATA GCGAGGAGGAAGAAGACACAGGAATGGGTGAGGTTGATGTGGACAATGGCTCTGTTATAACAGAGTAGTTGGTTGTGGGT ATAGCGAGAAATAGATAGTAGCACAGGACGCCTTTACTAATTTTGTCCTTGATTGGTTTCTTTTTAAACTCTTTTGATGC AGTTGTATTACACATACTCTGTTAAATTATTGTATGTTGAGAAGCGATTTTGGAGTTTCTTGCATAGGGTGTTCAACCCA AACTGAGGAATTTTCAGAAATTCTCTTACCTTGATGCGATCTTCAATTATTTGTTTTCATTTTTTGTCTGTCGACAAGGT CGAAAGAGAAGAAAAAAATAATCATTCCACACGTTTCATTTGATACCAAGTAATTAAATGTGTCACAATTTCGTGAGCTA TATGGTATGGCACAACACAAGTACCGACGAATATATTGACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTACCGACGA ATATTCTCTTTCATAAACTCCAAAATTTGCCCACTTGCCGTGATATATCATAACAAATGAGTCCCATGTGCAAATTAGAT TATTTCAACCTCATTCAATCACTAACCACTATCTAAAACATATGATCAATACTATTGGTTAATTTCTAGCCAGAATGTTT CCCATATGGGCTCGAATAGGGTAGAAAGTTCTGGTCTGTGTTCTACATTTGAGATACTATAGTCCCAACTTATGTACACA TATATAGTTCTATAGTTCTTACTTCTTTTTTGACTATGTAGTTCTAATAAGAAAACCTATTTTTACAGGGGGTTATTATT CTCCACTTAAAATATTGGGCTATTGAATACAGAAAGTGACATGTTCCCGATAAGTTATAGCAAAGTTTGGATCATATTAG ATTTTTTGAAGGATCAATTTTGACGCCCAAATTTATTTGTTTGTGATCATGTTACATTTTTTGATTAAGTATAATACACA CATTTGTGGCGACACCATTTTTTAGACATACATTTTTTATGTCTGGTTATAACCTCCACACAAAAAATTGAGCATTACAA ATACGTATGTCCGCCAATTGCTGTTGTTCTTGTGAAGTTAATTGTAGAAGAGTATAGTAGCTACTTTCGGATTCATGAGC AAAAGTTCCTTCCACACACGTGGTTTCACCACATGGGAAATTTAAATGCACCATTTCCCTTCTGAGATTCTCTTCACATC GAAGAGGACCAATTCTTTCGTTCTTATATGATCAAGCCCAAAAAAGGTTTTTCTTAAATGATATTATTCTCTACCACACA AGCAAAATCCTTAGCAAAAGAAAAGTGGTGAATAAGAAATGGCCCCACTGAAGTTTTCGTTCCATGAAGCTATCATGGAA AGAAGTTTATCATCTCCTAGAAGGAAAAGAGAGGGAGGGATGCTTTCATGTTGGAGGTTTCTCAAATTGAAGCTTCCATG GGCAAAGAGAACCAACACTACTTATGGTTATAAGTATGACCCTTTAAGCTATGCTCAGAACTTTGATGAGGGTTGTGTCG AGGACGACGATGAAGAAGCTTTACGCCATGGATTCTCTGCTAGATATGCAGCACCATCAGTTAAGTCGCTGAAGCAATGA TAACGTTGAAGCATTAAGGTCAGCCAAAGTATATATAAGAAACCTCTCCTTTCAAAGCATTCATATATAAGCCTTTTTTG TATAGTTAGACCCCCCACCTAAAACAAATTTGTACTATGGTTTTCTGTGCGTATTGTTTGTTGATTATCAAACACATCGG ATTCTTGAATTATAATATATTTGATTTCACGGTGAAATACTTTAGAATCACTTCTATTCAGAAGCTATAAGTCTTACCTT TCAAGTAAACATGTTTTATACTCTATAAACATCAACACTCACTTTTAACAATCATGGTTATGTATAATACAGTGTATAAC CAGTTTGTATTCAACACCTATGGAGGATGTTATTACTGGAATTGATGAGTGAAAGCTCTTTGTTGTAAACTTACTATCAT C
CDS sequence (LotjaGi1g1v0415200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCCGAATCTCGAGTGTCGCATGTACGAAACCAAGTACCCGGAGGTAGACATGGCGGTGATGATTCAGGTCAAGAA CATCGCCGATATGGGTGCATACGTCTCCCTGTTAGAGTACAACAACATCGAAGGGATGATCCTGTTCTCGGAGCTCTCCC GCCGTCGGATTCGGAGTGTCAGCAGTCTCATCAAGGTGGGTCGCATTGAGCCGGTGATGGTCCTCCGTGTTGACAAGGAG AAGGGTTACATCGATCTCAGTAAGCGTAGGGTTTCTGAAGAAGATATTCAGACTTGTGAGGAGAGGTACAACAAGAGCAA GCTCGTTCACTCCATCATGCGCCATGTTGCTGAAACCCTAAACATTGATTTAGAGGAGCTGTATGTTCACATTGGATGGC CTTTATATCGCAAATACGGTCATGCTTTTGAGGCATTCAAAATAGTTGTGACTGATCCTGATTCTGTTTTGAATCTTCTA ACTCGTGAGGTTAAGGAAGTTGGCCCTGATGGGCAAGAGGTGACCAAGGTGGTACCTGCTGTATCTGAAGAAGTGAAGGA TTCTCTTGTGAAGAATATCAGAAGGCGGATGACTCCCCAACCTTTGAAAATTAGGGCGGATATTGAAATGAAATGTTTCC AATTTGATGGAGTTCTTCACATCAAGGAGGCTATGCGTAAGGCTGAAGCTGCTGGAAATGATGACTGCCCTGTGAACATT AAACTTGTTGCGCCCCCACTTTACGTTCTTACCACACAGACCCTTGACAAGGAGCAAGGAATATTGGTTCTCAACAATGC CATTGTTTCTTGCACTGAATCAATAGAGAAACACAAGGGTAAACTTGTGGTGAAGGAGGCAGCCAGAGCGGTGAGTGAGC GTGATGATAAAGTGATTGCGGAGTACATGGCTAAGCTACGCCAAGAGAATGAGGAGGTGAGCGGCGATGAAGATAGCGAG GAGGAAGAAGACACAGGAATGGGTGAGGTTGATGTGGACAATGGCTCTGTTATAACAGAGTAG
Protein sequence (LotjaGi1g1v0415200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPNLECRMYETKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKE KGYIDLSKRRVSEEDIQTCEERYNKSKLVHSIMRHVAETLNIDLEELYVHIGWPLYRKYGHAFEAFKIVVTDPDSVLNLL TREVKEVGPDGQEVTKVVPAVSEEVKDSLVKNIRRRMTPQPLKIRADIEMKCFQFDGVLHIKEAMRKAEAAGNDDCPVNI KLVAPPLYVLTTQTLDKEQGILVLNNAIVSCTESIEKHKGKLVVKEAARAVSERDDKVIAEYMAKLRQENEEVSGDEDSE EEEDTGMGEVDVDNGSVITE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 334 | 334 | 1.0E-190 | ||
| PANTHER | 1 | 334 | 334 | 1.0E-190 | – | |
| Gene3D | 3 | 91 | 89 | 2.1E-38 | – | |
| SUPERFAMILY | 7 | 89 | 83 | 7.19E-17 | ||
| CDD | 15 | 90 | 76 | 1.97752E-30 | – | |
| Pfam | 15 | 89 | 75 | 6.6E-13 | ||
| SMART | 16 | 89 | 74 | 4.7E-11 | ||
| ProSiteProfiles | 18 | 89 | 72 | 15.904 | ||
| SUPERFAMILY | 91 | 196 | 106 | 3.92E-29 | ||
| Gene3D | 92 | 176 | 85 | 9.2E-31 | ||
| Pfam | 127 | 257 | 131 | 2.8E-39 | ||
| SUPERFAMILY | 200 | 316 | 117 | 8.89E-36 | ||
| Gene3D | 201 | 324 | 124 | 3.3E-40 | ||
| Coils | 303 | 323 | 21 | - | – | |
| MobiDBLite | 308 | 340 | 33 | - | – | |
| MobiDBLite | 313 | 329 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | Translation initiation factor activity | Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. |
Expression pattern of LotjaGi1g1v0415200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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